RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 G3V3Q6 166 aa7.51□□□□□ -1.21
CCDC40-208ENST00000572270 NUPR1O60356 82 aa7.51□□□□□ -1.21
CCDC40-208ENST00000572270 S100A9P06702 114 aaKnown RBP7.51□□□□□ -1.21
CCDC40-208ENST00000572270 ZNF726P1Q15940 193 aa7.51□□□□□ -1.21
CCDC40-208ENST00000572270 BAGE2Q86Y30 109 aa7.51□□□□□ -1.21
CCDC40-208ENST00000572270 TLX1NBP0CAT3 122 aa7.5□□□□□ -1.21
CCDC40-208ENST00000572270 FHITP49789 147 aa7.5□□□□□ -1.21
CCDC40-208ENST00000572270 CDC42SE2Q9NRR3 84 aa7.5□□□□□ -1.21
CCDC40-208ENST00000572270 NDUFA1O15239 70 aa7.49□□□□□ -1.21
CCDC40-208ENST00000572270 IGLC6P0CF74 106 aa7.49□□□□□ -1.21
CCDC40-208ENST00000572270 RPL28P46779 137 aaKnown RBP7.49□□□□□ -1.21
CCDC40-208ENST00000572270 CTAG1AP78358 180 aa7.49□□□□□ -1.21
CCDC40-208ENST00000572270 C5orf38Q86SI9 138 aa7.49□□□□□ -1.21
CCDC40-208ENST00000572270 KRTAP7-1Q8IUC3 87 aa7.49□□□□□ -1.21
CCDC40-208ENST00000572270 GATD1Q8NB37 220 aa7.49□□□□□ -1.21
CCDC40-208ENST00000572270 OR10D4PQ8NGN7 298 aa7.49□□□□□ -1.21
CCDC40-208ENST00000572270 MRAP2Q96G30 205 aa7.49□□□□□ -1.21
CCDC40-208ENST00000572270 ALG5Q9Y673 324 aa7.49□□□□□ -1.21
CCDC40-208ENST00000572270 INMT-MINDY4F8WBC2 141 aa7.48□□□□□ -1.21
CCDC40-208ENST00000572270 F8WDY8 70 aa7.48□□□□□ -1.21
CCDC40-208ENST00000572270 RPS20P60866 119 aaKnown RBP7.48□□□□□ -1.21
CCDC40-208ENST00000572270 KRTAP13-2Q52LG2 175 aa7.48□□□□□ -1.21
CCDC40-208ENST00000572270 MZT2BQ6NZ67 158 aa7.48□□□□□ -1.21
CCDC40-208ENST00000572270 SMDT1Q9H4I9 107 aa7.48□□□□□ -1.21
CCDC40-208ENST00000572270 SDHAF1A6NFY7 115 aa7.47□□□□□ -1.21
CCDC40-208ENST00000572270 F2Z2F3 143 aa7.47□□□□□ -1.21
CCDC40-208ENST00000572270 PMCHP20382 165 aa7.47□□□□□ -1.21
CCDC40-208ENST00000572270 TMEM241Q24JQ0 296 aa7.47□□□□□ -1.21
CCDC40-208ENST00000572270 RPL39LQ96EH5 51 aaKnown RBP7.47□□□□□ -1.21
CCDC40-208ENST00000572270 CTDSP1Q9GZU7 261 aa7.47□□□□□ -1.21
CCDC40-208ENST00000572270 I3L3M4 83 aa7.46□□□□□ -1.22
CCDC40-208ENST00000572270 DEFA1P59665 94 aa7.46□□□□□ -1.22
CCDC40-208ENST00000572270 MT1HP80294 61 aa7.46□□□□□ -1.22
CCDC40-208ENST00000572270 LCE2CQ5TA81 110 aa7.46□□□□□ -1.22
CCDC40-208ENST00000572270 MRPL52Q86TS9 123 aaKnown RBP7.46□□□□□ -1.22
CCDC40-208ENST00000572270 ANAPC11Q9NYG5 84 aa7.46□□□□□ -1.22
CCDC40-208ENST00000572270 XKRY2A2RUG3 117 aa7.45□□□□□ -1.22
CCDC40-208ENST00000572270 MAP1LC3B2A6NCE7 125 aa7.45□□□□□ -1.22
CCDC40-208ENST00000572270 LORP23490 312 aaPredicted RBP7.45□□□□□ -1.22
CCDC40-208ENST00000572270 FP248Q71RG6 208 aaPredicted RBP7.45□□□□□ -1.22
CCDC40-208ENST00000572270 ORAOV1Q8WV07 137 aa7.45□□□□□ -1.22
CCDC40-208ENST00000572270 MAP1LC3BQ9GZQ8 125 aa7.45□□□□□ -1.22
CCDC40-208ENST00000572270 TRAV13-1A0A0B4J241 112 aa7.44□□□□□ -1.22
CCDC40-208ENST00000572270 SCO2A0A1W2PP80 73 aa7.44□□□□□ -1.22
CCDC40-208ENST00000572270 SSNA1O43805 119 aa7.44□□□□□ -1.22
CCDC40-208ENST00000572270 AKR1C8PQ5T2L2 129 aa7.44□□□□□ -1.22
CCDC40-208ENST00000572270 C10orf25Q5T742 122 aa7.44□□□□□ -1.22
CCDC40-208ENST00000572270 LYZL1Q6UWQ5 148 aa7.44□□□□□ -1.22
CCDC40-208ENST00000572270 ENKURQ8TC29 256 aa7.44□□□□□ -1.22
CCDC40-208ENST00000572270 C6orf48Q9UBA6 75 aa7.44□□□□□ -1.22
CCDC40-208ENST00000572270 IGKV2D-26A0A0A0MRZ7 120 aa7.43□□□□□ -1.22
CCDC40-208ENST00000572270 KRTAP10-6P60371 365 aaPredicted RBP7.43□□□□□ -1.22
CCDC40-208ENST00000572270 KRTAP13-3Q3SY46 172 aa7.43□□□□□ -1.22
CCDC40-208ENST00000572270 FAM229BQ4G0N7 80 aa7.43□□□□□ -1.22
CCDC40-208ENST00000572270 PAGE4O60829 102 aa7.42□□□□□ -1.22
CCDC40-208ENST00000572270 PFDN1O60925 122 aa7.42□□□□□ -1.22
CCDC40-208ENST00000572270 CTRLP40313 264 aa7.42□□□□□ -1.22
CCDC40-208ENST00000572270 TWIST1Q15672 202 aa7.42□□□□□ -1.22
CCDC40-208ENST00000572270 TEX261Q6UWH6 196 aa7.42□□□□□ -1.22
CCDC40-208ENST00000572270 UNQ6190/PRO20217Q6UXQ8 127 aa7.42□□□□□ -1.22
CCDC40-208ENST00000572270 TMEM242Q9NWH2 141 aa7.42□□□□□ -1.22
CCDC40-208ENST00000572270 C7orf77A4D0Y5 90 aa7.41□□□□□ -1.22
CCDC40-208ENST00000572270 BCE1O60756 84 aa7.41□□□□□ -1.22
CCDC40-208ENST00000572270 IFNA1P01562 189 aa7.41□□□□□ -1.22
CCDC40-208ENST00000572270 SMAGPQ0VAQ4 97 aa7.41□□□□□ -1.22
CCDC40-208ENST00000572270 LBHQ53QV2 105 aaPredicted RBP7.41□□□□□ -1.22
CCDC40-208ENST00000572270 RNASE13Q5GAN3 156 aaKnown RBP7.41□□□□□ -1.22
CCDC40-208ENST00000572270 FAM210AQ96ND0 272 aa7.41□□□□□ -1.22
CCDC40-208ENST00000572270 BORCS7-ASMTA0A0B4J1R7 106 aa7.4□□□□□ -1.22
CCDC40-208ENST00000572270 C9orf129Q5T035 196 aaKnown RBP7.4□□□□□ -1.22
CCDC40-208ENST00000572270 SMIM15Q7Z3B0 74 aa7.4□□□□□ -1.22
CCDC40-208ENST00000572270 NDUFC2-KCTD14E9PQ53 114 aa7.39□□□□□ -1.23
CCDC40-208ENST00000572270 LINC00242Q5T6M2 205 aa7.39□□□□□ -1.23
CCDC40-208ENST00000572270 TMUB2Q71RG4 321 aa7.39□□□□□ -1.23
CCDC40-208ENST00000572270 CYTL1Q9NRR1 136 aa7.39□□□□□ -1.23
CCDC40-208ENST00000572270 C22orf24Q9Y442 160 aa7.39□□□□□ -1.23
CCDC40-208ENST00000572270 A0A1B0GVG6 124 aa7.38□□□□□ -1.23
CCDC40-208ENST00000572270 RPL7L1Q6DKI1 246 aaKnown RBP7.38□□□□□ -1.23
CCDC40-208ENST00000572270 CSDC2Q9Y534 153 aaKnown RBP7.38□□□□□ -1.23
CCDC40-208ENST00000572270 TRBV6-5A0A0K0K1A5 114 aa7.37□□□□□ -1.23
CCDC40-208ENST00000572270 TRBV30A0A0K0K1B3 111 aa7.37□□□□□ -1.23
CCDC40-208ENST00000572270 RPL35P42766 123 aaKnown RBP7.37□□□□□ -1.23
CCDC40-208ENST00000572270 C9orf62Q8N4C0 152 aa7.37□□□□□ -1.23
CCDC40-208ENST00000572270 ST20Q9HBF5 79 aa7.37□□□□□ -1.23
CCDC40-208ENST00000572270 M0R2T5 61 aa7.36□□□□□ -1.23
CCDC40-208ENST00000572270 SPAG11AQ6PDA7 123 aa7.36□□□□□ -1.23
CCDC40-208ENST00000572270 PACRGQ96M98 296 aaPredicted RBP7.36□□□□□ -1.23
CCDC40-208ENST00000572270 RNASE7Q9H1E1 156 aaKnown RBP7.36□□□□□ -1.23
CCDC40-208ENST00000572270 KRTAP19-2Q3LHN2 52 aa7.35□□□□□ -1.23
CCDC40-208ENST00000572270 CNFNQ9BYD5 112 aa7.35□□□□□ -1.23
CCDC40-208ENST00000572270 UBE2D4Q9Y2X8 147 aa7.35□□□□□ -1.23
CCDC40-208ENST00000572270 FCER1GP30273 86 aa7.34□□□□□ -1.23
CCDC40-208ENST00000572270 UBE2AP49459 152 aa7.34□□□□□ -1.23
CCDC40-208ENST00000572270 CENPWQ5EE01 88 aa7.34□□□□□ -1.23
CCDC40-208ENST00000572270 Q6ZUT4 128 aa7.34□□□□□ -1.23
CCDC40-208ENST00000572270 MRPL55Q7Z7F7 128 aaKnown RBP7.34□□□□□ -1.23
CCDC40-208ENST00000572270 IGHV3OR16-9A0A0B4J2B5 98 aa7.32□□□□□ -1.24
CCDC40-208ENST00000572270 A0A1B0GV50 99 aa7.32□□□□□ -1.24
CCDC40-208ENST00000572270 RAB19A4D1S5 217 aa7.32□□□□□ -1.24
CCDC40-208ENST00000572270 FOXA3P55318 350 aaPredicted RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms