RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 TRAV8-6A0A0B4J262 113 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 LEPROTL1O95214 131 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 NPSP0C0P6 89 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 CCL18P55774 89 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 LELP1Q5T871 98 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 DGAT2L7PQ6IED9 249 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 C2orf66Q6UXQ4 117 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 HIST3H2BBQ8N257 126 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 C20orf203Q8NBC4 194 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 TOMM6Q96B49 74 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 URB1-AS1Q96HZ7 61 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 TMEM101Q96IK0 257 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 CHCHD5Q9BSY4 110 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 TIMM21Q9BVV7 248 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 SPANXA1Q9NS26 97 aa4.45□□□□□ -1.7
VPS53-209ENST00000570771 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.44□□□□□ -1.7
VPS53-209ENST00000570771 ZNF25P17030 456 aaPredicted RBP4.44□□□□□ -1.7
VPS53-209ENST00000570771 AKR1D1P51857 326 aa4.44□□□□□ -1.7
VPS53-209ENST00000570771 LINC00310P59036 64 aa4.44□□□□□ -1.7
VPS53-209ENST00000570771 PDZD11Q5EBL8 140 aa4.44□□□□□ -1.7
VPS53-209ENST00000570771 AMMECR1LQ6DCA0 310 aa4.44□□□□□ -1.7
VPS53-209ENST00000570771 Q6ZN92 141 aa4.44□□□□□ -1.7
VPS53-209ENST00000570771 ERASQ7Z444 233 aa4.44□□□□□ -1.7
VPS53-209ENST00000570771 FAM19A2Q8N3H0 131 aa4.44□□□□□ -1.7
VPS53-209ENST00000570771 TMEM141Q96I45 108 aa4.44□□□□□ -1.7
VPS53-209ENST00000570771 SCGB3A1Q96QR1 104 aa4.44□□□□□ -1.7
VPS53-209ENST00000570771 DNAH5Q8TE73 4624 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 A0A087WX48 190 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 NUPR1O60356 82 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 FABP4P15090 132 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 PMCHL1Q16048 86 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 LYPD5Q6UWN5 251 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 NTM-AS1Q6ZSK4 140 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 MRPL52Q86TS9 123 aaKnown RBP4.43□□□□□ -1.7
VPS53-209ENST00000570771 IFI27L1Q96BM0 104 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 TIMM17AQ99595 171 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 CHCHD7Q9BUK0 85 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 MAP1LC3CQ9BXW4 147 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 APLNQ9ULZ1 77 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 PYGO1Q9Y3Y4 419 aa4.43□□□□□ -1.7
VPS53-209ENST00000570771 CSDC2Q9Y534 153 aaKnown RBP4.43□□□□□ -1.7
VPS53-209ENST00000570771 HECTD4Q9Y4D8 3996 aa4.42□□□□□ -1.7
VPS53-209ENST00000570771 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.42□□□□□ -1.7
VPS53-209ENST00000570771 A0A096LNJ9 63 aa4.42□□□□□ -1.7
VPS53-209ENST00000570771 A0A1B0GUV1 79 aa4.42□□□□□ -1.7
VPS53-209ENST00000570771 C20orf202A1L168 122 aa4.42□□□□□ -1.7
VPS53-209ENST00000570771 IGKV2-29A2NJV5 120 aaPredicted RBP4.42□□□□□ -1.7
VPS53-209ENST00000570771 TMEM262E9PQX1 116 aa4.42□□□□□ -1.7
VPS53-209ENST00000570771 FGF6P10767 208 aa4.42□□□□□ -1.7
VPS53-209ENST00000570771 RPL39P62891 51 aaKnown RBP4.42□□□□□ -1.7
VPS53-209ENST00000570771 MRPS36P82909 103 aaKnown RBP4.42□□□□□ -1.7
VPS53-209ENST00000570771 OR5A1Q8NGJ0 315 aa4.42□□□□□ -1.7
VPS53-209ENST00000570771 DEFB104AQ8WTQ1 72 aa4.42□□□□□ -1.7
VPS53-209ENST00000570771 HIST1H2BLQ99880 126 aa4.42□□□□□ -1.7
VPS53-209ENST00000570771 DYNC1H1Q14204 4646 aaKnown RBP4.42□□□□□ -1.7
VPS53-209ENST00000570771 IGIPA6NJ69 53 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 C3orf84H3BNL1 204 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 PRSS1P07477 247 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 GAGE6Q13070 117 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 ESRGQ1W209 222 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 TEX43Q6ZNM6 134 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 UBE2DNLQ8IWF7 75 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 C2orf88Q9BSF0 95 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 VCX2Q9H322 139 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 UBE2D4Q9Y2X8 147 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 MRPS16Q9Y3D3 137 aaKnown RBP4.41□□□□□ -1.7
VPS53-209ENST00000570771 PKD1P98161 4303 aa4.41□□□□□ -1.7
VPS53-209ENST00000570771 TRAV9-2A0A087WT02 112 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 TRAV12-1A0A0B4J245 112 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 A6NJY4 79 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 K7EP13 123 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 CCL25O15444 150 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 KRTDAPP60985 99 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 SEC11AP67812 179 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 PMVKQ15126 192 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 PET117Q6UWS5 81 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 SPATA12Q7Z6I5 190 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 OR10D4PQ8NGN7 298 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 UPK3BQ9BT76 320 aa4.4□□□□□ -1.71
VPS53-209ENST00000570771 IGLV4-3A0A075B6K6 122 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 H0Y8G0 127 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 SYS1-DBNDD2H3BUS1 97 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 SIVA1O15304 175 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 ANGP03950 147 aaKnown RBP4.39□□□□□ -1.71
VPS53-209ENST00000570771 C3orf79P0CE67 100 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 RBX1P62877 108 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 LINC01556Q5JQF7 62 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 LGALS9CQ6DKI2 356 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 ZNF664Q8N3J9 261 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 C10orf126Q8N4M7 172 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 BAALCQ8WXS3 180 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 KRTAP1-5Q9BYS1 174 aa4.39□□□□□ -1.71
VPS53-209ENST00000570771 IFITM10A6NMD0 228 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 SCGB1D1O95968 90 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 CRPP02741 224 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 PLNP26678 52 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 SS18Q15532 418 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 MPV17L2Q567V2 206 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 TTC32Q5I0X7 151 aa4.38□□□□□ -1.71
VPS53-209ENST00000570771 Q6ZUT4 128 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms