RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 SIGMAR1Q99720 223 aa7.54□□□□□ -1.2
CDH3-208ENST00000569036 CHAC1Q9BUX1 264 aa7.54□□□□□ -1.2
CDH3-208ENST00000569036 TRAV12-1A0A0B4J245 112 aa7.53□□□□□ -1.2
CDH3-208ENST00000569036 A0A1B0GWB2 263 aa7.53□□□□□ -1.2
CDH3-208ENST00000569036 CRIP1P50238 77 aa7.53□□□□□ -1.2
CDH3-208ENST00000569036 CEND1Q8N111 149 aa7.53□□□□□ -1.2
CDH3-208ENST00000569036 LRCOL1A6NCL2 159 aa7.52□□□□□ -1.21
CDH3-208ENST00000569036 NXPH4O95158 308 aa7.52□□□□□ -1.21
CDH3-208ENST00000569036 NMUP48645 174 aa7.52□□□□□ -1.21
CDH3-208ENST00000569036 AMN1Q8IY45 258 aa7.52□□□□□ -1.21
CDH3-208ENST00000569036 SLC50A1Q9BRV3 221 aa7.52□□□□□ -1.21
CDH3-208ENST00000569036 MSRB1Q9NZV6 116 aa7.52□□□□□ -1.21
CDH3-208ENST00000569036 TP73-AS1Q9UF72 201 aa7.52□□□□□ -1.21
CDH3-208ENST00000569036 U3KQE9 123 aa7.52□□□□□ -1.21
CDH3-208ENST00000569036 TMEM238LA0A1B0GVL6 79 aa7.51□□□□□ -1.21
CDH3-208ENST00000569036 A6NJY4 79 aa7.51□□□□□ -1.21
CDH3-208ENST00000569036 FABP5P3A8MUU1 101 aa7.51□□□□□ -1.21
CDH3-208ENST00000569036 H3BNG1 76 aa7.51□□□□□ -1.21
CDH3-208ENST00000569036 NPYP01303 97 aa7.51□□□□□ -1.21
CDH3-208ENST00000569036 IL4P05112 153 aa7.51□□□□□ -1.21
CDH3-208ENST00000569036 AZU1P20160 251 aa7.51□□□□□ -1.21
CDH3-208ENST00000569036 Q8N814 137 aa7.51□□□□□ -1.21
CDH3-208ENST00000569036 HHLA3Q9XRX5 114 aa7.51□□□□□ -1.21
CDH3-208ENST00000569036 TRBV25-1A0A075B6N4 114 aa7.5□□□□□ -1.21
CDH3-208ENST00000569036 MRAP2Q96G30 205 aa7.5□□□□□ -1.21
CDH3-208ENST00000569036 LENEPQ9Y5L5 61 aa7.5□□□□□ -1.21
CDH3-208ENST00000569036 LPAP08519 4548 aa7.5□□□□□ -1.21
CDH3-208ENST00000569036 A0A087WX48 190 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 A0A096LPF7 62 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 LOC389332A0A1B0GUA5 103 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 TNFRSF6BO95407 300 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 PPP1R17O96001 155 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 LEPP41159 167 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 PCP2Q8IVA1 136 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 SVIPQ8NHG7 77 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 RNF185Q96GF1 192 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 ZNF479Q96JC4 524 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 TPPP3Q9BW30 176 aa7.49□□□□□ -1.21
CDH3-208ENST00000569036 SPANXB1Q9NS25 103 aaPredicted RBP7.49□□□□□ -1.21
CDH3-208ENST00000569036 GAGE12HA6NDE8 117 aa7.48□□□□□ -1.21
CDH3-208ENST00000569036 F6UB75 175 aa7.48□□□□□ -1.21
CDH3-208ENST00000569036 H3BTX0 84 aa7.48□□□□□ -1.21
CDH3-208ENST00000569036 PRSS1P07477 247 aa7.48□□□□□ -1.21
CDH3-208ENST00000569036 FXYD2P54710 66 aa7.48□□□□□ -1.21
CDH3-208ENST00000569036 RPL24P83731 157 aaKnown RBP7.48□□□□□ -1.21
CDH3-208ENST00000569036 LAGE3Q14657 143 aa7.48□□□□□ -1.21
CDH3-208ENST00000569036 ORMDL2Q53FV1 153 aa7.48□□□□□ -1.21
CDH3-208ENST00000569036 OR10J6PQ8NGY7 276 aa7.48□□□□□ -1.21
CDH3-208ENST00000569036 C8orf49Q96NF6 230 aa7.48□□□□□ -1.21
CDH3-208ENST00000569036 TIMM8BQ9Y5J9 83 aaPredicted RBP7.48□□□□□ -1.21
CDH3-208ENST00000569036 M0QXV9 152 aa7.47□□□□□ -1.21
CDH3-208ENST00000569036 SNAI2O43623 268 aa7.47□□□□□ -1.21
CDH3-208ENST00000569036 PAPPA-AS1Q5QFB9 102 aa7.47□□□□□ -1.21
CDH3-208ENST00000569036 RAB37Q96AX2 223 aa7.47□□□□□ -1.21
CDH3-208ENST00000569036 F8VRH5 84 aa7.46□□□□□ -1.22
CDH3-208ENST00000569036 H3BMG7 143 aa7.46□□□□□ -1.22
CDH3-208ENST00000569036 H7C1H1 209 aa7.46□□□□□ -1.22
CDH3-208ENST00000569036 M0R381 172 aa7.46□□□□□ -1.22
CDH3-208ENST00000569036 M0R3E3 92 aa7.46□□□□□ -1.22
CDH3-208ENST00000569036 INSP01308 110 aa7.46□□□□□ -1.22
CDH3-208ENST00000569036 RPL37AP61513 92 aaKnown RBP7.46□□□□□ -1.22
CDH3-208ENST00000569036 RPL32P62910 135 aaKnown RBP7.46□□□□□ -1.22
CDH3-208ENST00000569036 GAGE13Q4V321 117 aa7.46□□□□□ -1.22
CDH3-208ENST00000569036 ZC2HC1BQ5TFG8 222 aa7.46□□□□□ -1.22
CDH3-208ENST00000569036 AMTNQ6UX39 209 aa7.46□□□□□ -1.22
CDH3-208ENST00000569036 C20orf78Q9BR46 151 aa7.46□□□□□ -1.22
CDH3-208ENST00000569036 NOP10Q9NPE3 64 aaKnown RBP7.46□□□□□ -1.22
CDH3-208ENST00000569036 NHP2Q9NX24 153 aaKnown RBP7.46□□□□□ -1.22
CDH3-208ENST00000569036 TRBV7-3A0A075B6L6 115 aa7.45□□□□□ -1.22
CDH3-208ENST00000569036 A0A0J9YX75 114 aa7.45□□□□□ -1.22
CDH3-208ENST00000569036 A8MTW9 85 aa7.45□□□□□ -1.22
CDH3-208ENST00000569036 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.45□□□□□ -1.22
CDH3-208ENST00000569036 PSCAO43653 123 aa7.45□□□□□ -1.22
CDH3-208ENST00000569036 VSIG2Q96IQ7 327 aa7.45□□□□□ -1.22
CDH3-208ENST00000569036 LINC00467Q9BRT7 94 aa7.45□□□□□ -1.22
CDH3-208ENST00000569036 TRBV20-1A0A075B6N2 111 aa7.44□□□□□ -1.22
CDH3-208ENST00000569036 TRBV7-9A0A0J9YWB2 115 aa7.44□□□□□ -1.22
CDH3-208ENST00000569036 LCE2AQ5TA79 106 aaPredicted RBP7.44□□□□□ -1.22
CDH3-208ENST00000569036 LINC00612Q8N6U2 182 aa7.44□□□□□ -1.22
CDH3-208ENST00000569036 CIRBP-AS1Q8TBR5 109 aa7.44□□□□□ -1.22
CDH3-208ENST00000569036 C16orf74Q96GX8 76 aa7.44□□□□□ -1.22
CDH3-208ENST00000569036 SPANXA1Q9NS26 97 aa7.44□□□□□ -1.22
CDH3-208ENST00000569036 PRO0461Q9UI25 63 aa7.44□□□□□ -1.22
CDH3-208ENST00000569036 IGKV2-40A0A087WW87 121 aaPredicted RBP7.43□□□□□ -1.22
CDH3-208ENST00000569036 IGKV2D-26A0A0A0MRZ7 120 aa7.43□□□□□ -1.22
CDH3-208ENST00000569036 MYMXA0A1B0GTQ4 84 aa7.43□□□□□ -1.22
CDH3-208ENST00000569036 IGKV2D-40P01614 121 aaPredicted RBP7.43□□□□□ -1.22
CDH3-208ENST00000569036 ORM1P02763 201 aa7.43□□□□□ -1.22
CDH3-208ENST00000569036 SPINK13Q1W4C9 94 aa7.43□□□□□ -1.22
CDH3-208ENST00000569036 NRACQ8N912 160 aa7.43□□□□□ -1.22
CDH3-208ENST00000569036 HIST1H4GQ99525 98 aa7.43□□□□□ -1.22
CDH3-208ENST00000569036 SMIM2Q9BVW6 85 aa7.43□□□□□ -1.22
CDH3-208ENST00000569036 MRPL16Q9NX20 251 aaKnown RBP7.43□□□□□ -1.22
CDH3-208ENST00000569036 CYSLTR1Q9Y271 337 aa7.43□□□□□ -1.22
CDH3-208ENST00000569036 TMSB15BA0A087X1C1 80 aa7.42□□□□□ -1.22
CDH3-208ENST00000569036 SOCS3O14543 225 aa7.42□□□□□ -1.22
CDH3-208ENST00000569036 BUB3O43684 328 aa7.42□□□□□ -1.22
CDH3-208ENST00000569036 ID1P41134 155 aa7.42□□□□□ -1.22
CDH3-208ENST00000569036 TMEM78Q5T7P6 136 aa7.42□□□□□ -1.22
CDH3-208ENST00000569036 C9orf47Q6ZRZ4 202 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms