RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 SVIPQ8NHG7 77 aa5.74□□□□□ -1.49
SF3B3-212ENST00000568539 CHCHD1Q96BP2 118 aaKnown RBP5.74□□□□□ -1.49
SF3B3-212ENST00000568539 A0A087WX48 190 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 A0A096LNJ9 63 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 LCE6AA0A183 80 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 A0A1B0GUV1 79 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 TMEM262E9PQX1 116 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 SERF1AO75920 110 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 IGHV3-30P01768 117 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 IGHV3-33P01772 117 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 IGHV3-30-3P0DP02 117 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 IGHV3-30-5P0DP03 117 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 FGF6P10767 208 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 RBX1P62877 108 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 C2orf66Q6UXQ4 117 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 Q8N976 141 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 TMEM18Q96B42 140 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 UBE2D4Q9Y2X8 147 aa5.73□□□□□ -1.49
SF3B3-212ENST00000568539 IGLV4-60A0A075B6I1 120 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 K7EP13 123 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 NUPR1O60356 82 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 HSBP1O75506 76 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 PLA2G1BP04054 148 aaKnown RBP5.72□□□□□ -1.49
SF3B3-212ENST00000568539 ZNF25P17030 456 aaPredicted RBP5.72□□□□□ -1.49
SF3B3-212ENST00000568539 BTF3P20290 206 aaKnown RBP5.72□□□□□ -1.49
SF3B3-212ENST00000568539 G0S2P27469 103 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 CTAG1AP78358 180 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 PMCHL1Q16048 86 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 COA6Q5JTJ3 125 aaKnown RBP5.72□□□□□ -1.49
SF3B3-212ENST00000568539 AMMECR1LQ6DCA0 310 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 TOMM6Q96B49 74 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 TIMM21Q9BVV7 248 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 KRTAP1-5Q9BYS1 174 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 CYSLTR1Q9Y271 337 aa5.72□□□□□ -1.49
SF3B3-212ENST00000568539 CSDC2Q9Y534 153 aaKnown RBP5.72□□□□□ -1.49
SF3B3-212ENST00000568539 DNAH10Q8IVF4 4471 aa5.71□□□□□ -1.49
SF3B3-212ENST00000568539 NBDYA0A0U1RRE5 68 aa5.71□□□□□ -1.5
SF3B3-212ENST00000568539 IGIPA6NJ69 53 aa5.71□□□□□ -1.5
SF3B3-212ENST00000568539 HBDP02042 147 aa5.71□□□□□ -1.5
SF3B3-212ENST00000568539 NDUFA6P56556 154 aa5.71□□□□□ -1.5
SF3B3-212ENST00000568539 SMAGPQ0VAQ4 97 aa5.71□□□□□ -1.5
SF3B3-212ENST00000568539 FAM104AQ969W3 186 aa5.71□□□□□ -1.5
SF3B3-212ENST00000568539 SPANXA1Q9NS26 97 aa5.71□□□□□ -1.5
SF3B3-212ENST00000568539 PYGO1Q9Y3Y4 419 aa5.71□□□□□ -1.5
SF3B3-212ENST00000568539 TRAV9-2A0A087WT02 112 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 LINC01549A6NIU2 74 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 IBA57-AS1B1ANH7 110 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 ANGP03950 147 aaKnown RBP5.7□□□□□ -1.5
SF3B3-212ENST00000568539 PDZD11Q5EBL8 140 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 TTC32Q5I0X7 151 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 DGAT2L7PQ6IED9 249 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 Q6ZR54 194 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 FAM19A2Q8N3H0 131 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 C10orf126Q8N4M7 172 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 OR5A1Q8NGJ0 315 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 TMEM101Q96IK0 257 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 CDC42SE2Q9NRR3 84 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 PRR34Q9NV39 138 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 KLK12Q9UKR0 248 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 HECTD4Q9Y4D8 3996 aa5.7□□□□□ -1.5
SF3B3-212ENST00000568539 IGLV4-3A0A075B6K6 122 aa5.69□□□□□ -1.5
SF3B3-212ENST00000568539 M0R2N4 97 aa5.69□□□□□ -1.5
SF3B3-212ENST00000568539 NPSP0C0P6 89 aa5.69□□□□□ -1.5
SF3B3-212ENST00000568539 MRPS36P82909 103 aaKnown RBP5.69□□□□□ -1.5
SF3B3-212ENST00000568539 ENHOQ6UWT2 76 aa5.69□□□□□ -1.5
SF3B3-212ENST00000568539 Q6ZUT4 128 aa5.69□□□□□ -1.5
SF3B3-212ENST00000568539 ERASQ7Z444 233 aa5.69□□□□□ -1.5
SF3B3-212ENST00000568539 LINC00269Q8N2A0 174 aa5.69□□□□□ -1.5
SF3B3-212ENST00000568539 ZNF664Q8N3J9 261 aa5.69□□□□□ -1.5
SF3B3-212ENST00000568539 SCGB3A1Q96QR1 104 aa5.69□□□□□ -1.5
SF3B3-212ENST00000568539 TIMM17AQ99595 171 aa5.69□□□□□ -1.5
SF3B3-212ENST00000568539 OPRPNQ99935 248 aaPredicted RBP5.69□□□□□ -1.5
SF3B3-212ENST00000568539 REG3AQ06141 175 aa5.68□□□□□ -1.5
SF3B3-212ENST00000568539 RNASE13Q5GAN3 156 aaKnown RBP5.68□□□□□ -1.5
SF3B3-212ENST00000568539 CLPSL2Q6UWE3 100 aa5.68□□□□□ -1.5
SF3B3-212ENST00000568539 TMEM141Q96I45 108 aa5.68□□□□□ -1.5
SF3B3-212ENST00000568539 LINC00173Q6ZV60 143 aa5.67□□□□□ -1.5
SF3B3-212ENST00000568539 UBE2WQ96B02 151 aa5.67□□□□□ -1.5
SF3B3-212ENST00000568539 AMELXQ99217 191 aa5.67□□□□□ -1.5
SF3B3-212ENST00000568539 TRAV8-3A0A0A6YYJ7 113 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.66□□□□□ -1.5
SF3B3-212ENST00000568539 ATP5LO75964 103 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 LEPROTL1O95214 131 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 CRPP02741 224 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 S100A6P06703 90 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 MIAQ16674 131 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 PAPPA-AS1Q5QFB9 102 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 Q6ZN92 141 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 TEX43Q6ZNM6 134 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 BAALCQ8WXS3 180 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 Q9HAA7 133 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 VPS13DQ5THJ4 4388 aa5.66□□□□□ -1.5
SF3B3-212ENST00000568539 TRAV8-4A0A0B4J246 113 aa5.65□□□□□ -1.5
SF3B3-212ENST00000568539 IGKV3OR2-268A0A0C4DH90 116 aa5.65□□□□□ -1.5
SF3B3-212ENST00000568539 LINC00959A0A1B0GUT2 108 aa5.65□□□□□ -1.5
SF3B3-212ENST00000568539 IFITM10A6NMD0 228 aa5.65□□□□□ -1.5
SF3B3-212ENST00000568539 FABP4P15090 132 aa5.65□□□□□ -1.5
SF3B3-212ENST00000568539 ZC2HC1BQ5TFG8 222 aa5.65□□□□□ -1.5
SF3B3-212ENST00000568539 HIST3H2BBQ8N257 126 aa5.65□□□□□ -1.5
SF3B3-212ENST00000568539 IFI27L1Q96BM0 104 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms