RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 A0A1B0GW15 77 aa9.09□□□□□ -0.95
CLN3-235ENST00000568497 APOC3P02656 99 aa9.09□□□□□ -0.95
CLN3-235ENST00000568497 PKIAP61925 76 aa9.09□□□□□ -0.95
CLN3-235ENST00000568497 RPL39P62891 51 aaKnown RBP9.09□□□□□ -0.95
CLN3-235ENST00000568497 ELOBQ15370 118 aa9.09□□□□□ -0.95
CLN3-235ENST00000568497 TMEM136Q6ZRR5 245 aa9.09□□□□□ -0.95
CLN3-235ENST00000568497 BTF3L4Q96K17 158 aa9.09□□□□□ -0.95
CLN3-235ENST00000568497 PRELID3AQ96N28 172 aa9.09□□□□□ -0.95
CLN3-235ENST00000568497 OPRPNQ99935 248 aaPredicted RBP9.09□□□□□ -0.95
CLN3-235ENST00000568497 CARHSP1Q9Y2V2 147 aaKnown RBP9.09□□□□□ -0.95
CLN3-235ENST00000568497 TRBV27A0A0K0K1C4 114 aa9.08□□□□□ -0.96
CLN3-235ENST00000568497 VCYO14598 125 aa9.08□□□□□ -0.96
CLN3-235ENST00000568497 FCER1GP30273 86 aa9.08□□□□□ -0.96
CLN3-235ENST00000568497 ATP5L2Q7Z4Y8 100 aa9.08□□□□□ -0.96
CLN3-235ENST00000568497 NTN5Q8WTR8 489 aaPredicted RBP9.08□□□□□ -0.96
CLN3-235ENST00000568497 PRR34Q9NV39 138 aa9.08□□□□□ -0.96
CLN3-235ENST00000568497 OXTP01178 125 aa9.07□□□□□ -0.96
CLN3-235ENST00000568497 S100A8P05109 93 aa9.07□□□□□ -0.96
CLN3-235ENST00000568497 SMIM2Q9BVW6 85 aa9.07□□□□□ -0.96
CLN3-235ENST00000568497 TGIF2-C20orf24A0A0A6YYL0 155 aa9.06□□□□□ -0.96
CLN3-235ENST00000568497 GAGE12HA6NDE8 117 aa9.06□□□□□ -0.96
CLN3-235ENST00000568497 USP17L23D6RBM5 183 aa9.06□□□□□ -0.96
CLN3-235ENST00000568497 Q0VG73 95 aa9.06□□□□□ -0.96
CLN3-235ENST00000568497 Q6ZUT4 128 aa9.06□□□□□ -0.96
CLN3-235ENST00000568497 ORMDL3Q8N138 153 aa9.06□□□□□ -0.96
CLN3-235ENST00000568497 RMI2Q96E14 147 aa9.06□□□□□ -0.96
CLN3-235ENST00000568497 CTDSP1Q9GZU7 261 aa9.06□□□□□ -0.96
CLN3-235ENST00000568497 RNF213Q63HN8 5207 aa9.05□□□□□ -0.96
CLN3-235ENST00000568497 A0A1B0GUV1 79 aa9.05□□□□□ -0.96
CLN3-235ENST00000568497 MIAQ16674 131 aa9.05□□□□□ -0.96
CLN3-235ENST00000568497 ZC2HC1BQ5TFG8 222 aa9.05□□□□□ -0.96
CLN3-235ENST00000568497 FAM30AQ9NZY2 134 aa9.05□□□□□ -0.96
CLN3-235ENST00000568497 FAT3Q8TDW7 4589 aa9.05□□□□□ -0.96
CLN3-235ENST00000568497 TRBV24-1A0A075B6N3 115 aa9.04□□□□□ -0.96
CLN3-235ENST00000568497 OR5A1Q8NGJ0 315 aa9.04□□□□□ -0.96
CLN3-235ENST00000568497 PPP1R17O96001 155 aa9.03□□□□□ -0.96
CLN3-235ENST00000568497 PRSS1P07477 247 aa9.03□□□□□ -0.96
CLN3-235ENST00000568497 XCL1P47992 114 aa9.03□□□□□ -0.96
CLN3-235ENST00000568497 CHCHD10Q8WYQ3 142 aaPredicted RBP9.03□□□□□ -0.96
CLN3-235ENST00000568497 FAM104AQ969W3 186 aa9.03□□□□□ -0.96
CLN3-235ENST00000568497 KIR2DL4Q99706 377 aa9.03□□□□□ -0.96
CLN3-235ENST00000568497 C20orf78Q9BR46 151 aa9.03□□□□□ -0.96
CLN3-235ENST00000568497 UBE2D4Q9Y2X8 147 aa9.03□□□□□ -0.96
CLN3-235ENST00000568497 HIGD2BQ4VC39 106 aa9.02□□□□□ -0.97
CLN3-235ENST00000568497 LINC00526Q96FQ7 95 aa9.02□□□□□ -0.97
CLN3-235ENST00000568497 CDC42SE2Q9NRR3 84 aa9.02□□□□□ -0.97
CLN3-235ENST00000568497 COX11Q9Y6N1 276 aa9.02□□□□□ -0.97
CLN3-235ENST00000568497 S100PP25815 95 aa9.01□□□□□ -0.97
CLN3-235ENST00000568497 IFI27P40305 119 aaPredicted RBP9.01□□□□□ -0.97
CLN3-235ENST00000568497 RHEBQ15382 184 aa9.01□□□□□ -0.97
CLN3-235ENST00000568497 ZNF664Q8N3J9 261 aa9.01□□□□□ -0.97
CLN3-235ENST00000568497 TMEM101Q96IK0 257 aa9.01□□□□□ -0.97
CLN3-235ENST00000568497 MAP1LC3AQ9H492 121 aa9.01□□□□□ -0.97
CLN3-235ENST00000568497 TRAV13-1A0A0B4J241 112 aa9□□□□□ -0.97
CLN3-235ENST00000568497 LINC00959A0A1B0GUT2 108 aa9□□□□□ -0.97
CLN3-235ENST00000568497 CCL25O15444 150 aa9□□□□□ -0.97
CLN3-235ENST00000568497 PPBPP02775 128 aa9□□□□□ -0.97
CLN3-235ENST00000568497 SLPIP03973 132 aa9□□□□□ -0.97
CLN3-235ENST00000568497 DGAT2L7PQ6IED9 249 aa9□□□□□ -0.97
CLN3-235ENST00000568497 MRPL18Q9H0U6 180 aaKnown RBP9□□□□□ -0.97
CLN3-235ENST00000568497 H7C423 109 aa8.99□□□□□ -0.97
CLN3-235ENST00000568497 FABP9Q0Z7S8 132 aa8.99□□□□□ -0.97
CLN3-235ENST00000568497 FOXI1Q12951 378 aa8.99□□□□□ -0.97
CLN3-235ENST00000568497 CBLN2Q8IUK8 224 aa8.99□□□□□ -0.97
CLN3-235ENST00000568497 C15orf56Q8N910 161 aa8.99□□□□□ -0.97
CLN3-235ENST00000568497 hDV102S1A0JD36 115 aa8.98□□□□□ -0.97
CLN3-235ENST00000568497 RPL32P62910 135 aaKnown RBP8.98□□□□□ -0.97
CLN3-235ENST00000568497 MRPL52Q86TS9 123 aaKnown RBP8.98□□□□□ -0.97
CLN3-235ENST00000568497 Q8N8P6 123 aa8.98□□□□□ -0.97
CLN3-235ENST00000568497 PHOX2AO14813 284 aa8.97□□□□□ -0.97
CLN3-235ENST00000568497 ZNF25P17030 456 aaPredicted RBP8.97□□□□□ -0.97
CLN3-235ENST00000568497 RAB5AP20339 215 aa8.97□□□□□ -0.97
CLN3-235ENST00000568497 SVBPQ8N300 66 aa8.97□□□□□ -0.97
CLN3-235ENST00000568497 TRAV9-1A0A075B6T8 112 aa8.96□□□□□ -0.98
CLN3-235ENST00000568497 TRAV8-4A0A0B4J246 113 aa8.96□□□□□ -0.98
CLN3-235ENST00000568497 SNAPINO95295 136 aa8.96□□□□□ -0.98
CLN3-235ENST00000568497 NDUFA5Q16718 116 aa8.96□□□□□ -0.98
CLN3-235ENST00000568497 C5orf38Q86SI9 138 aa8.96□□□□□ -0.98
CLN3-235ENST00000568497 YPEL4Q96NS1 127 aa8.96□□□□□ -0.98
CLN3-235ENST00000568497 ALKBH7Q9BT30 221 aaPredicted RBP8.96□□□□□ -0.98
CLN3-235ENST00000568497 GNB1LQ9BYB4 327 aa8.96□□□□□ -0.98
CLN3-235ENST00000568497 PANO1I0J062 215 aa8.95□□□□□ -0.98
CLN3-235ENST00000568497 Q6ZSA8 131 aa8.95□□□□□ -0.98
CLN3-235ENST00000568497 LRP2P98164 4655 aa8.95□□□□□ -0.98
CLN3-235ENST00000568497 IGLV4-3A0A075B6K6 122 aa8.94□□□□□ -0.98
CLN3-235ENST00000568497 KRTAP10-4P60372 401 aaPredicted RBP8.94□□□□□ -0.98
CLN3-235ENST00000568497 TRAPPC1Q9Y5R8 145 aa8.94□□□□□ -0.98
CLN3-235ENST00000568497 PRSS47A8MTI9 375 aa8.93□□□□□ -0.98
CLN3-235ENST00000568497 SCO1O75880 301 aa8.93□□□□□ -0.98
CLN3-235ENST00000568497 CHTF8P0CG12 524 aa8.93□□□□□ -0.98
CLN3-235ENST00000568497 SMAGPQ0VAQ4 97 aa8.93□□□□□ -0.98
CLN3-235ENST00000568497 SS18Q15532 418 aa8.93□□□□□ -0.98
CLN3-235ENST00000568497 C2orf66Q6UXQ4 117 aa8.93□□□□□ -0.98
CLN3-235ENST00000568497 LAMTOR2Q9Y2Q5 125 aa8.93□□□□□ -0.98
CLN3-235ENST00000568497 IFITM10A6NMD0 228 aa8.92□□□□□ -0.98
CLN3-235ENST00000568497 COX6A2Q02221 97 aa8.92□□□□□ -0.98
CLN3-235ENST00000568497 SCXQ7RTU7 201 aa8.92□□□□□ -0.98
CLN3-235ENST00000568497 PRSS3P2Q8NHM4 247 aa8.92□□□□□ -0.98
CLN3-235ENST00000568497 URB1-AS1Q96HZ7 61 aa8.92□□□□□ -0.98
CLN3-235ENST00000568497 TIMM21Q9BVV7 248 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms