RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	TNP2	Q05952	138 aa		11.99	□□□□□ -0.49
COMMD4-222	ENST00000568034		Q0VG73	95 aa		11.99	□□□□□ -0.49
COMMD4-222	ENST00000568034	TMA7	Q9Y2S6	64 aa	Known RBP	11.99	□□□□□ -0.49
COMMD4-222	ENST00000568034	DNAH5	Q8TE73	4624 aa		11.99	□□□□□ -0.49
COMMD4-222	ENST00000568034	MIA	Q16674	131 aa		11.98	□□□□□ -0.49
COMMD4-222	ENST00000568034	KRTAP26-1	Q6PEX3	210 aa		11.98	□□□□□ -0.49
COMMD4-222	ENST00000568034	C2orf66	Q6UXQ4	117 aa		11.98	□□□□□ -0.49
COMMD4-222	ENST00000568034	LINC00336	Q6ZUF6	198 aa		11.98	□□□□□ -0.49
COMMD4-222	ENST00000568034		Q6ZUT4	128 aa		11.98	□□□□□ -0.49
COMMD4-222	ENST00000568034	TMEM101	Q96IK0	257 aa		11.98	□□□□□ -0.49
COMMD4-222	ENST00000568034	FA2H	Q7L5A8	372 aa		11.97	□□□□□ -0.49
COMMD4-222	ENST00000568034	ZNF664	Q8N3J9	261 aa		11.97	□□□□□ -0.49
COMMD4-222	ENST00000568034	SPANXA1	Q9NS26	97 aa		11.97	□□□□□ -0.49
COMMD4-222	ENST00000568034	BIRC6	Q9NR09	4857 aa		11.97	□□□□□ -0.49
COMMD4-222	ENST00000568034	HECTD4	Q9Y4D8	3996 aa		11.96	□□□□□ -0.49
COMMD4-222	ENST00000568034	PRSS29P	A6NIE9	313 aa		11.96	□□□□□ -0.49
COMMD4-222	ENST00000568034	MAPKAPK5-AS1	Q8N8E1	139 aa		11.96	□□□□□ -0.49
COMMD4-222	ENST00000568034	CYSLTR1	Q9Y271	337 aa		11.96	□□□□□ -0.49
COMMD4-222	ENST00000568034	PYGO1	Q9Y3Y4	419 aa		11.96	□□□□□ -0.49
COMMD4-222	ENST00000568034	IGKV2D-24	A0A075B6R9	120 aa		11.95	□□□□□ -0.5
COMMD4-222	ENST00000568034		A0A096LNJ9	63 aa		11.95	□□□□□ -0.5
COMMD4-222	ENST00000568034	SMAGP	Q0VAQ4	97 aa		11.95	□□□□□ -0.5
COMMD4-222	ENST00000568034	RNASE13	Q5GAN3	156 aa	Known RBP	11.95	□□□□□ -0.5
COMMD4-222	ENST00000568034	OPRPN	Q99935	248 aa	Predicted RBP	11.95	□□□□□ -0.5
COMMD4-222	ENST00000568034	AP5S1	Q9NUS5	200 aa		11.95	□□□□□ -0.5
COMMD4-222	ENST00000568034		A0A1B0GVY2	172 aa		11.94	□□□□□ -0.5
COMMD4-222	ENST00000568034	LINC00614	P0C842	121 aa		11.94	□□□□□ -0.5
COMMD4-222	ENST00000568034	MRPS36	P82909	103 aa	Known RBP	11.94	□□□□□ -0.5
COMMD4-222	ENST00000568034	DGAT2L7P	Q6IED9	249 aa		11.94	□□□□□ -0.5
COMMD4-222	ENST00000568034	TOMM6	Q96B49	74 aa		11.94	□□□□□ -0.5
COMMD4-222	ENST00000568034	RMI2	Q96E14	147 aa		11.94	□□□□□ -0.5
COMMD4-222	ENST00000568034	C1orf43	Q9BWL3	253 aa		11.94	□□□□□ -0.5
COMMD4-222	ENST00000568034	TM2D2	Q9BX73	214 aa		11.94	□□□□□ -0.5
COMMD4-222	ENST00000568034	IGLV10-54	A0A075B6I4	117 aa		11.93	□□□□□ -0.5
COMMD4-222	ENST00000568034	IGLV4-3	A0A075B6K6	122 aa		11.93	□□□□□ -0.5
COMMD4-222	ENST00000568034	IGKV3OR2-268	A0A0C4DH90	116 aa		11.93	□□□□□ -0.5
COMMD4-222	ENST00000568034	LRCOL1	A6NCL2	159 aa		11.93	□□□□□ -0.5
COMMD4-222	ENST00000568034	IGIP	A6NJ69	53 aa		11.93	□□□□□ -0.5
COMMD4-222	ENST00000568034	TRAV8-4	A0A0B4J246	113 aa		11.92	□□□□□ -0.5
COMMD4-222	ENST00000568034	LINC00310	P59036	64 aa		11.92	□□□□□ -0.5
COMMD4-222	ENST00000568034	WFDC2	Q14508	124 aa		11.92	□□□□□ -0.5
COMMD4-222	ENST00000568034	COX11	Q9Y6N1	276 aa		11.92	□□□□□ -0.5
COMMD4-222	ENST00000568034	LINC00959	A0A1B0GUT2	108 aa		11.91	□□□□□ -0.5
COMMD4-222	ENST00000568034	PSCA	O43653	123 aa		11.91	□□□□□ -0.5
COMMD4-222	ENST00000568034	RAB5B	P61020	215 aa		11.91	□□□□□ -0.5
COMMD4-222	ENST00000568034		A0A087WTM6	91 aa		11.9	□□□□□ -0.5
COMMD4-222	ENST00000568034	G0S2	P27469	103 aa		11.9	□□□□□ -0.5
COMMD4-222	ENST00000568034	TIMM17A	Q99595	171 aa		11.9	□□□□□ -0.5
COMMD4-222	ENST00000568034	NPS	P0C0P6	89 aa		11.89	□□□□□ -0.51
COMMD4-222	ENST00000568034	PMCHL1	Q16048	86 aa		11.89	□□□□□ -0.51
COMMD4-222	ENST00000568034	LINC00173	Q6ZV60	143 aa		11.89	□□□□□ -0.51
COMMD4-222	ENST00000568034	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	11.89	□□□□□ -0.51
COMMD4-222	ENST00000568034	CHCHD1	Q96BP2	118 aa	Known RBP	11.89	□□□□□ -0.51
COMMD4-222	ENST00000568034	TMEM141	Q96I45	108 aa		11.89	□□□□□ -0.51
COMMD4-222	ENST00000568034	PKHD1	P08F94	4074 aa		11.89	□□□□□ -0.51
COMMD4-222	ENST00000568034	LRP1B	Q9NZR2	4599 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST1H2BK	O60814	126 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST1H2BJ	P06899	126 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST1H2BO	P23527	126 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST1H2BB	P33778	126 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST1H2BD	P58876	126 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST1H2BC	P62807	126 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST2H2BE	Q16778	126 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	ERAS	Q7Z444	233 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	BAGE3	Q86Y29	109 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	BAALC	Q8WXS3	180 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST1H2BH	Q93079	126 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	AMELX	Q99217	191 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST1H2BN	Q99877	126 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HIST1H2BM	Q99879	126 aa		11.88	□□□□□ -0.51
COMMD4-222	ENST00000568034	HBD	P02042	147 aa		11.87	□□□□□ -0.51
COMMD4-222	ENST00000568034	ZC2HC1B	Q5TFG8	222 aa		11.87	□□□□□ -0.51
COMMD4-222	ENST00000568034	SCGB3A1	Q96QR1	104 aa		11.87	□□□□□ -0.51
COMMD4-222	ENST00000568034	TRAV13-1	A0A0B4J241	112 aa		11.86	□□□□□ -0.51
COMMD4-222	ENST00000568034	GAGE12H	A6NDE8	117 aa		11.86	□□□□□ -0.51
COMMD4-222	ENST00000568034	LINC01549	A6NIU2	74 aa		11.86	□□□□□ -0.51
COMMD4-222	ENST00000568034	CCL25	O15444	150 aa		11.86	□□□□□ -0.51
COMMD4-222	ENST00000568034	SERF1A	O75920	110 aa		11.86	□□□□□ -0.51
COMMD4-222	ENST00000568034	FOXI1	Q12951	378 aa		11.86	□□□□□ -0.51
COMMD4-222	ENST00000568034	PDZD11	Q5EBL8	140 aa		11.86	□□□□□ -0.51
COMMD4-222	ENST00000568034	IFITM10	A6NMD0	228 aa		11.85	□□□□□ -0.51
COMMD4-222	ENST00000568034	LECT2	O14960	151 aa		11.85	□□□□□ -0.51
COMMD4-222	ENST00000568034	NUPR1	O60356	82 aa		11.85	□□□□□ -0.51
COMMD4-222	ENST00000568034	XCL1	P47992	114 aa		11.85	□□□□□ -0.51
COMMD4-222	ENST00000568034	SS18	Q15532	418 aa		11.85	□□□□□ -0.51
COMMD4-222	ENST00000568034	C1orf196	B1AJZ1	125 aa		11.84	□□□□□ -0.51
COMMD4-222	ENST00000568034	TEX43	Q6ZNM6	134 aa		11.84	□□□□□ -0.51
COMMD4-222	ENST00000568034	UBE2D1	P51668	147 aa		11.83	□□□□□ -0.52
COMMD4-222	ENST00000568034	KRTAP10-2	P60368	255 aa		11.83	□□□□□ -0.52
COMMD4-222	ENST00000568034	CD164L2	Q6UWJ8	174 aa		11.83	□□□□□ -0.52
COMMD4-222	ENST00000568034		Q6ZN92	141 aa		11.83	□□□□□ -0.52
COMMD4-222	ENST00000568034		Q8N814	137 aa		11.83	□□□□□ -0.52
COMMD4-222	ENST00000568034	DNAH8	Q96JB1	4490 aa		11.82	□□□□□ -0.52
COMMD4-222	ENST00000568034	USP17L23	D6RBM5	183 aa		11.82	□□□□□ -0.52
COMMD4-222	ENST00000568034	HSBP1	O75506	76 aa		11.82	□□□□□ -0.52
COMMD4-222	ENST00000568034	FAM19A2	Q8N3H0	131 aa		11.82	□□□□□ -0.52
COMMD4-222	ENST00000568034	VCX2	Q9H322	139 aa		11.82	□□□□□ -0.52
COMMD4-222	ENST00000568034	PAPPA-AS1	Q5QFB9	102 aa		11.81	□□□□□ -0.52
COMMD4-222	ENST00000568034	FUS	P35637	526 aa	Known RBP eCLIP	11.8	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms