RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 SIVA1O15304 175 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 IGHV3-30P01768 117 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 IGHV3-33P01772 117 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 IGHV3-30-3P0DP02 117 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 IGHV3-30-5P0DP03 117 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 ESDP10768 282 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 LAGE3Q14657 143 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 NFE4Q86UQ8 179 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 NIT1Q86X76 327 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 BAGE3Q86Y29 109 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 Q8N3U1 123 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 URB1-AS1Q96HZ7 61 aa7.61□□□□□ -1.19
CLN3-226ENST00000567160 HIST1H2BKO60814 126 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 HIST1H2BJP06899 126 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 HIST1H2BOP23527 126 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 HIST1H2BBP33778 126 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 HIST1H2BDP58876 126 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 HIST1H2BCP62807 126 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 HAMPP81172 84 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 HIST2H2BEQ16778 126 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 ORMDL2Q53FV1 153 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.6□□□□□ -1.19
CLN3-226ENST00000567160 HIST1H2BHQ93079 126 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 HIST1H2BNQ99877 126 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 HIST1H2BMQ99879 126 aa7.6□□□□□ -1.19
CLN3-226ENST00000567160 A0A087WTM6 91 aa7.59□□□□□ -1.19
CLN3-226ENST00000567160 A0A087WX48 190 aa7.59□□□□□ -1.19
CLN3-226ENST00000567160 K7EMI3 77 aa7.59□□□□□ -1.19
CLN3-226ENST00000567160 LINC00614P0C842 121 aa7.59□□□□□ -1.19
CLN3-226ENST00000567160 RAB5BP61020 215 aa7.59□□□□□ -1.19
CLN3-226ENST00000567160 RPL39P62891 51 aaKnown RBP7.59□□□□□ -1.19
CLN3-226ENST00000567160 Q0VG73 95 aa7.59□□□□□ -1.19
CLN3-226ENST00000567160 MPV17L2Q567V2 206 aa7.59□□□□□ -1.19
CLN3-226ENST00000567160 AMMECR1LQ6DCA0 310 aa7.59□□□□□ -1.19
CLN3-226ENST00000567160 C20orf203Q8NBC4 194 aa7.59□□□□□ -1.19
CLN3-226ENST00000567160 AP5S1Q9NUS5 200 aa7.59□□□□□ -1.19
CLN3-226ENST00000567160 LINC01546A6NGU7 62 aa7.58□□□□□ -1.2
CLN3-226ENST00000567160 SERF1AO75920 110 aa7.58□□□□□ -1.2
CLN3-226ENST00000567160 DNAH10OSP0CZ25 163 aa7.58□□□□□ -1.2
CLN3-226ENST00000567160 FGF6P10767 208 aa7.58□□□□□ -1.2
CLN3-226ENST00000567160 PMCHL1Q16048 86 aa7.58□□□□□ -1.2
CLN3-226ENST00000567160 Q8N976 141 aa7.58□□□□□ -1.2
CLN3-226ENST00000567160 TMEM18Q96B42 140 aa7.58□□□□□ -1.2
CLN3-226ENST00000567160 H7C423 109 aa7.57□□□□□ -1.2
CLN3-226ENST00000567160 NDUFA6P56556 154 aa7.57□□□□□ -1.2
CLN3-226ENST00000567160 PKIAP61925 76 aa7.57□□□□□ -1.2
CLN3-226ENST00000567160 RBX1P62877 108 aa7.57□□□□□ -1.2
CLN3-226ENST00000567160 LINC01556Q5JQF7 62 aa7.57□□□□□ -1.2
CLN3-226ENST00000567160 C2orf66Q6UXQ4 117 aa7.57□□□□□ -1.2
CLN3-226ENST00000567160 CHCHD1Q96BP2 118 aaKnown RBP7.57□□□□□ -1.2
CLN3-226ENST00000567160 CYSLTR1Q9Y271 337 aa7.57□□□□□ -1.2
CLN3-226ENST00000567160 IGLV4-60A0A075B6I1 120 aa7.56□□□□□ -1.2
CLN3-226ENST00000567160 OXTP01178 125 aa7.56□□□□□ -1.2
CLN3-226ENST00000567160 LINC00310P59036 64 aa7.56□□□□□ -1.2
CLN3-226ENST00000567160 DGAT2L7PQ6IED9 249 aa7.56□□□□□ -1.2
CLN3-226ENST00000567160 TMEM101Q96IK0 257 aa7.56□□□□□ -1.2
CLN3-226ENST00000567160 KLK12Q9UKR0 248 aa7.56□□□□□ -1.2
CLN3-226ENST00000567160 UBE2D4Q9Y2X8 147 aa7.56□□□□□ -1.2
CLN3-226ENST00000567160 IGLV5-52A0A0A0MRZ9 124 aa7.55□□□□□ -1.2
CLN3-226ENST00000567160 NUPR1O60356 82 aa7.55□□□□□ -1.2
CLN3-226ENST00000567160 HSBP1O75506 76 aa7.55□□□□□ -1.2
CLN3-226ENST00000567160 ANGP03950 147 aaKnown RBP7.55□□□□□ -1.2
CLN3-226ENST00000567160 CLPSL2Q6UWE3 100 aa7.55□□□□□ -1.2
CLN3-226ENST00000567160 OR5A1Q8NGJ0 315 aa7.55□□□□□ -1.2
CLN3-226ENST00000567160 TRAV9-2A0A087WT02 112 aa7.54□□□□□ -1.2
CLN3-226ENST00000567160 A0A096LNJ9 63 aa7.54□□□□□ -1.2
CLN3-226ENST00000567160 A0A1B0GUV1 79 aa7.54□□□□□ -1.2
CLN3-226ENST00000567160 HBDP02042 147 aa7.54□□□□□ -1.2
CLN3-226ENST00000567160 ZNF25P17030 456 aaPredicted RBP7.54□□□□□ -1.2
CLN3-226ENST00000567160 G0S2P27469 103 aa7.54□□□□□ -1.2
CLN3-226ENST00000567160 SMAGPQ0VAQ4 97 aa7.54□□□□□ -1.2
CLN3-226ENST00000567160 RNASE13Q5GAN3 156 aaKnown RBP7.54□□□□□ -1.2
CLN3-226ENST00000567160 MRPL52Q86TS9 123 aaKnown RBP7.54□□□□□ -1.2
CLN3-226ENST00000567160 FAM19A2Q8N3H0 131 aa7.54□□□□□ -1.2
CLN3-226ENST00000567160 NTN5Q8WTR8 489 aaPredicted RBP7.54□□□□□ -1.2
CLN3-226ENST00000567160 TOMM6Q96B49 74 aa7.54□□□□□ -1.2
CLN3-226ENST00000567160 OPRPNQ99935 248 aaPredicted RBP7.54□□□□□ -1.2
CLN3-226ENST00000567160 TIMM21Q9BVV7 248 aa7.54□□□□□ -1.2
CLN3-226ENST00000567160 SPANXA1Q9NS26 97 aa7.54□□□□□ -1.2
CLN3-226ENST00000567160 IGKV3OR2-268A0A0C4DH90 116 aa7.53□□□□□ -1.2
CLN3-226ENST00000567160 Q6ZUT4 128 aa7.53□□□□□ -1.2
CLN3-226ENST00000567160 LINC00528Q8N1L1 170 aa7.53□□□□□ -1.2
CLN3-226ENST00000567160 LINC00269Q8N2A0 174 aa7.53□□□□□ -1.2
CLN3-226ENST00000567160 C10orf126Q8N4M7 172 aa7.53□□□□□ -1.2
CLN3-226ENST00000567160 SCGB3A1Q96QR1 104 aa7.53□□□□□ -1.2
CLN3-226ENST00000567160 RNF213Q63HN8 5207 aa7.52□□□□□ -1.21
CLN3-226ENST00000567160 CRPP02741 224 aa7.52□□□□□ -1.21
CLN3-226ENST00000567160 UBE2WQ96B02 151 aa7.52□□□□□ -1.21
CLN3-226ENST00000567160 Q9HAA7 133 aa7.52□□□□□ -1.21
CLN3-226ENST00000567160 IGLV4-3A0A075B6K6 122 aa7.51□□□□□ -1.21
CLN3-226ENST00000567160 IGIPA6NJ69 53 aa7.51□□□□□ -1.21
CLN3-226ENST00000567160 IBA57-AS1B1ANH7 110 aa7.51□□□□□ -1.21
CLN3-226ENST00000567160 ERASQ7Z444 233 aa7.51□□□□□ -1.21
CLN3-226ENST00000567160 ZNF664Q8N3J9 261 aa7.51□□□□□ -1.21
CLN3-226ENST00000567160 FAM104AQ969W3 186 aa7.51□□□□□ -1.21
CLN3-226ENST00000567160 CDC42SE2Q9NRR3 84 aa7.51□□□□□ -1.21
CLN3-226ENST00000567160 PYGO1Q9Y3Y4 419 aa7.51□□□□□ -1.21
CLN3-226ENST00000567160 CSDC2Q9Y534 153 aaKnown RBP7.51□□□□□ -1.21
CLN3-226ENST00000567160 LRP1Q07954 4544 aaKnown RBP7.5□□□□□ -1.21
CLN3-226ENST00000567160 LINC01549A6NIU2 74 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms