RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 RMI2Q96E14 147 aa7.46□□□□□ -1.22
CLN3-224ENST00000566816 TM2D2Q9BX73 214 aa7.46□□□□□ -1.22
CLN3-224ENST00000566816 CYSLTR1Q9Y271 337 aa7.46□□□□□ -1.22
CLN3-224ENST00000566816 RNASEKQ6P5S7 137 aaKnown RBP7.45□□□□□ -1.22
CLN3-224ENST00000566816 ENHOQ6UWT2 76 aa7.45□□□□□ -1.22
CLN3-224ENST00000566816 C2orf66Q6UXQ4 117 aa7.45□□□□□ -1.22
CLN3-224ENST00000566816 LINC00336Q6ZUF6 198 aa7.45□□□□□ -1.22
CLN3-224ENST00000566816 ZNF664Q8N3J9 261 aa7.45□□□□□ -1.22
CLN3-224ENST00000566816 TOMM6Q96B49 74 aa7.45□□□□□ -1.22
CLN3-224ENST00000566816 URB1-AS1Q96HZ7 61 aa7.45□□□□□ -1.22
CLN3-224ENST00000566816 IGIPA6NJ69 53 aa7.44□□□□□ -1.22
CLN3-224ENST00000566816 CRPP02741 224 aa7.44□□□□□ -1.22
CLN3-224ENST00000566816 REG3AQ06141 175 aa7.44□□□□□ -1.22
CLN3-224ENST00000566816 PAPPA-AS1Q5QFB9 102 aa7.44□□□□□ -1.22
CLN3-224ENST00000566816 Q6ZRN7 208 aaPredicted RBP7.44□□□□□ -1.22
CLN3-224ENST00000566816 LINC00269Q8N2A0 174 aa7.44□□□□□ -1.22
CLN3-224ENST00000566816 UBE2WQ96B02 151 aa7.44□□□□□ -1.22
CLN3-224ENST00000566816 TIMM17AQ99595 171 aa7.44□□□□□ -1.22
CLN3-224ENST00000566816 RPL39P62891 51 aaKnown RBP7.43□□□□□ -1.22
CLN3-224ENST00000566816 ERASQ7Z444 233 aa7.43□□□□□ -1.22
CLN3-224ENST00000566816 BAGE3Q86Y29 109 aa7.43□□□□□ -1.22
CLN3-224ENST00000566816 TMEM141Q96I45 108 aa7.43□□□□□ -1.22
CLN3-224ENST00000566816 FAT2Q9NYQ8 4349 aa7.42□□□□□ -1.22
CLN3-224ENST00000566816 RTL8CO15255 209 aa7.42□□□□□ -1.22
CLN3-224ENST00000566816 FAM104AQ969W3 186 aa7.42□□□□□ -1.22
CLN3-224ENST00000566816 FRAS1Q86XX4 4008 aa7.42□□□□□ -1.22
CLN3-224ENST00000566816 HIST1H2BKO60814 126 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 HBDP02042 147 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 HIST1H2BJP06899 126 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 HIST1H2BOP23527 126 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 HIST1H2BBP33778 126 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 HIST1H2BDP58876 126 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 HIST1H2BCP62807 126 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 HIST2H2BEQ16778 126 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.41□□□□□ -1.22
CLN3-224ENST00000566816 HIST1H2BHQ93079 126 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 HIST1H2BNQ99877 126 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 HIST1H2BMQ99879 126 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 C1orf43Q9BWL3 253 aa7.41□□□□□ -1.22
CLN3-224ENST00000566816 IGLV4-3A0A075B6K6 122 aa7.4□□□□□ -1.22
CLN3-224ENST00000566816 A0A096LNJ9 63 aa7.4□□□□□ -1.22
CLN3-224ENST00000566816 LINC00959A0A1B0GUT2 108 aa7.4□□□□□ -1.22
CLN3-224ENST00000566816 C1orf196B1AJZ1 125 aa7.4□□□□□ -1.22
CLN3-224ENST00000566816 COA6Q5JTJ3 125 aaKnown RBP7.4□□□□□ -1.22
CLN3-224ENST00000566816 KRTAP26-1Q6PEX3 210 aa7.4□□□□□ -1.22
CLN3-224ENST00000566816 SCGB3A1Q96QR1 104 aa7.4□□□□□ -1.22
CLN3-224ENST00000566816 AMELXQ99217 191 aa7.4□□□□□ -1.22
CLN3-224ENST00000566816 HSBP1O75506 76 aa7.39□□□□□ -1.23
CLN3-224ENST00000566816 SS18Q15532 418 aa7.39□□□□□ -1.23
CLN3-224ENST00000566816 PDZD11Q5EBL8 140 aa7.39□□□□□ -1.23
CLN3-224ENST00000566816 Q6ZN92 141 aa7.39□□□□□ -1.23
CLN3-224ENST00000566816 VCX2Q9H322 139 aa7.39□□□□□ -1.23
CLN3-224ENST00000566816 Q9HAA7 133 aa7.39□□□□□ -1.23
CLN3-224ENST00000566816 IGKV2D-24A0A075B6R9 120 aa7.38□□□□□ -1.23
CLN3-224ENST00000566816 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.38□□□□□ -1.23
CLN3-224ENST00000566816 ATP5LO75964 103 aa7.38□□□□□ -1.23
CLN3-224ENST00000566816 TEX43Q6ZNM6 134 aa7.38□□□□□ -1.23
CLN3-224ENST00000566816 Q6ZUT4 128 aa7.38□□□□□ -1.23
CLN3-224ENST00000566816 FAM19A3Q7Z5A8 133 aa7.38□□□□□ -1.23
CLN3-224ENST00000566816 PSCAO43653 123 aa7.37□□□□□ -1.23
CLN3-224ENST00000566816 SERF1AO75920 110 aa7.37□□□□□ -1.23
CLN3-224ENST00000566816 LINC00310P59036 64 aa7.37□□□□□ -1.23
CLN3-224ENST00000566816 CD164L2Q6UWJ8 174 aa7.37□□□□□ -1.23
CLN3-224ENST00000566816 CHCHD10Q8WYQ3 142 aaPredicted RBP7.37□□□□□ -1.23
CLN3-224ENST00000566816 PACRGQ96M98 296 aaPredicted RBP7.37□□□□□ -1.23
CLN3-224ENST00000566816 OPRPNQ99935 248 aaPredicted RBP7.37□□□□□ -1.23
CLN3-224ENST00000566816 C2orf88Q9BSF0 95 aa7.37□□□□□ -1.23
CLN3-224ENST00000566816 LRCOL1A6NCL2 159 aa7.36□□□□□ -1.23
CLN3-224ENST00000566816 PRSS29PA6NIE9 313 aa7.36□□□□□ -1.23
CLN3-224ENST00000566816 SEC11AP67812 179 aa7.36□□□□□ -1.23
CLN3-224ENST00000566816 MAPKAPK5-AS1Q8N8E1 139 aa7.36□□□□□ -1.23
CLN3-224ENST00000566816 DNAH11Q96DT5 4516 aa7.35□□□□□ -1.23
CLN3-224ENST00000566816 A0A087WTM6 91 aa7.35□□□□□ -1.23
CLN3-224ENST00000566816 IFITM10A6NMD0 228 aa7.35□□□□□ -1.23
CLN3-224ENST00000566816 EREGO14944 169 aa7.35□□□□□ -1.23
CLN3-224ENST00000566816 UBE2D1P51668 147 aa7.35□□□□□ -1.23
CLN3-224ENST00000566816 PMVKQ15126 192 aa7.35□□□□□ -1.23
CLN3-224ENST00000566816 CLPSL2Q6UWE3 100 aa7.35□□□□□ -1.23
CLN3-224ENST00000566816 LINC00173Q6ZV60 143 aa7.35□□□□□ -1.23
CLN3-224ENST00000566816 CST9LQ9H4G1 147 aa7.35□□□□□ -1.23
CLN3-224ENST00000566816 IGLV10-54A0A075B6I4 117 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 TRAV13-1A0A0B4J241 112 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 IGHV3OR16-9A0A0B4J2B5 98 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 NUPR1O60356 82 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 TNP2Q05952 138 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 FOXI1Q12951 378 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 C14orf177Q52M58 125 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 CFAP161Q6P656 301 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 LINC01561Q8N1V8 128 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 BAALCQ8WXS3 180 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 HSPB8Q9UJY1 196 aa7.34□□□□□ -1.23
CLN3-224ENST00000566816 TRAV12-1A0A0B4J245 112 aa7.33□□□□□ -1.24
CLN3-224ENST00000566816 IGKV3OR2-268A0A0C4DH90 116 aa7.33□□□□□ -1.24
CLN3-224ENST00000566816 GAGE12HA6NDE8 117 aa7.33□□□□□ -1.24
CLN3-224ENST00000566816 LEPROTL1O95214 131 aa7.33□□□□□ -1.24
CLN3-224ENST00000566816 PMCHL1Q16048 86 aa7.33□□□□□ -1.24
CLN3-224ENST00000566816 RNASE13Q5GAN3 156 aaKnown RBP7.33□□□□□ -1.24
CLN3-224ENST00000566816 LINC00242Q5T6M2 205 aa7.33□□□□□ -1.24
CLN3-224ENST00000566816 FAM19A2Q8N3H0 131 aa7.33□□□□□ -1.24
CLN3-224ENST00000566816 PKD1P98161 4303 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms