RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 COX7A2LO14548 114 aa4.36□□□□□ -1.71
VPS4A-203ENST00000564399 BCL2L11O43521 198 aa4.36□□□□□ -1.71
VPS4A-203ENST00000564399 IFNA1P01562 189 aa4.36□□□□□ -1.71
VPS4A-203ENST00000564399 PMCHP20382 165 aa4.36□□□□□ -1.71
VPS4A-203ENST00000564399 RPL35P42766 123 aaKnown RBP4.36□□□□□ -1.71
VPS4A-203ENST00000564399 UBE2BP63146 152 aa4.36□□□□□ -1.71
VPS4A-203ENST00000564399 IFITM3Q01628 133 aa4.36□□□□□ -1.71
VPS4A-203ENST00000564399 TWIST1Q15672 202 aa4.36□□□□□ -1.71
VPS4A-203ENST00000564399 KRTAP11-1Q8IUC1 163 aa4.36□□□□□ -1.71
VPS4A-203ENST00000564399 RPL39LQ96EH5 51 aaKnown RBP4.36□□□□□ -1.71
VPS4A-203ENST00000564399 FXYD6-FXYD2A0A087WZ82 144 aa4.35□□□□□ -1.71
VPS4A-203ENST00000564399 FAM168BA1KXE4 195 aa4.35□□□□□ -1.71
VPS4A-203ENST00000564399 SDHAF1A6NFY7 115 aa4.35□□□□□ -1.71
VPS4A-203ENST00000564399 Q5BKY6 102 aa4.35□□□□□ -1.71
VPS4A-203ENST00000564399 FAM19A5Q7Z5A7 132 aaPredicted RBP4.35□□□□□ -1.71
VPS4A-203ENST00000564399 SFT2D1Q8WV19 159 aa4.35□□□□□ -1.71
VPS4A-203ENST00000564399 C2orf48Q96LS8 159 aa4.35□□□□□ -1.71
VPS4A-203ENST00000564399 CDIP1Q9H305 208 aa4.35□□□□□ -1.71
VPS4A-203ENST00000564399 CARHSP1Q9Y2V2 147 aaKnown RBP4.35□□□□□ -1.71
VPS4A-203ENST00000564399 C19orf71A6NCJ1 209 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 C1orf196B1AJZ1 125 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 I3L3M4 83 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 EIF4EBP3O60516 100 aaPredicted RBP4.34□□□□□ -1.71
VPS4A-203ENST00000564399 ESDP10768 282 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 SPAG11BQ08648 103 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 RNF151Q2KHN1 245 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 CENPWQ5EE01 88 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 XP32Q5T750 250 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 LINC00299Q6ZSB3 139 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 C5orf38Q86SI9 138 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 KCNRGQ8N5I3 272 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 MRAP2Q96G30 205 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 IMMP2LQ96T52 175 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 CDC42SE2Q9NRR3 84 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 NDUFA13Q9P0J0 144 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 ALG5Q9Y673 324 aa4.34□□□□□ -1.71
VPS4A-203ENST00000564399 GAGE2EQ4V326 116 aa4.33□□□□□ -1.72
VPS4A-203ENST00000564399 TEX261Q6UWH6 196 aa4.33□□□□□ -1.72
VPS4A-203ENST00000564399 SMIM15Q7Z3B0 74 aa4.33□□□□□ -1.72
VPS4A-203ENST00000564399 C9orf62Q8N4C0 152 aa4.33□□□□□ -1.72
VPS4A-203ENST00000564399 FAM213BQ8TBF2 198 aa4.33□□□□□ -1.72
VPS4A-203ENST00000564399 TMEM242Q9NWH2 141 aa4.33□□□□□ -1.72
VPS4A-203ENST00000564399 GAGE2DQ9UEU5 116 aa4.33□□□□□ -1.72
VPS4A-203ENST00000564399 TRAV13-1A0A0B4J241 112 aa4.32□□□□□ -1.72
VPS4A-203ENST00000564399 G3V3Q6 166 aa4.32□□□□□ -1.72
VPS4A-203ENST00000564399 M0QXV9 152 aa4.32□□□□□ -1.72
VPS4A-203ENST00000564399 TSHBP01222 138 aa4.32□□□□□ -1.72
VPS4A-203ENST00000564399 CTRLP40313 264 aa4.32□□□□□ -1.72
VPS4A-203ENST00000564399 GNG4P50150 75 aa4.32□□□□□ -1.72
VPS4A-203ENST00000564399 MRPL52Q86TS9 123 aaKnown RBP4.32□□□□□ -1.72
VPS4A-203ENST00000564399 MBD3L1Q8WWY6 194 aa4.32□□□□□ -1.72
VPS4A-203ENST00000564399 RETNLBQ9BQ08 111 aa4.32□□□□□ -1.72
VPS4A-203ENST00000564399 C7orf77A4D0Y5 90 aa4.31□□□□□ -1.72
VPS4A-203ENST00000564399 RAB19A4D1S5 217 aa4.31□□□□□ -1.72
VPS4A-203ENST00000564399 KRTAP9-7A8MTY7 169 aa4.31□□□□□ -1.72
VPS4A-203ENST00000564399 NDUFA1O15239 70 aa4.31□□□□□ -1.72
VPS4A-203ENST00000564399 GIPP09681 153 aaPredicted RBP4.31□□□□□ -1.72
VPS4A-203ENST00000564399 FOXA3P55318 350 aaPredicted RBP4.31□□□□□ -1.72
VPS4A-203ENST00000564399 LINC01547P58512 204 aaPredicted RBP4.31□□□□□ -1.72
VPS4A-203ENST00000564399 RNASE13Q5GAN3 156 aaKnown RBP4.31□□□□□ -1.72
VPS4A-203ENST00000564399 TYMSOSQ8TAI1 123 aa4.31□□□□□ -1.72
VPS4A-203ENST00000564399 ORAOV1Q8WV07 137 aa4.31□□□□□ -1.72
VPS4A-203ENST00000564399 RPP21Q9H633 154 aaKnown RBP4.31□□□□□ -1.72
VPS4A-203ENST00000564399 ST20Q9HBF5 79 aa4.31□□□□□ -1.72
VPS4A-203ENST00000564399 BIN3Q9NQY0 253 aa4.31□□□□□ -1.72
VPS4A-203ENST00000564399 MRPL35Q9NZE8 188 aaKnown RBP4.31□□□□□ -1.72
VPS4A-203ENST00000564399 ZNF861PO60384 105 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 CRYGAP11844 174 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 CCL20P78556 96 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 SMAGPQ0VAQ4 97 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 TMEM241Q24JQ0 296 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 NUDT10Q8NFP7 164 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 OR10D4PQ8NGN7 298 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 C11orf52Q96A22 123 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 NUDT11Q96G61 164 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 CNFNQ9BYD5 112 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 RNASE7Q9H1E1 156 aaKnown RBP4.3□□□□□ -1.72
VPS4A-203ENST00000564399 CYTL1Q9NRR1 136 aa4.3□□□□□ -1.72
VPS4A-203ENST00000564399 IGLV7-46A0A075B6I9 117 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 A0A087X002 238 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 TRBV6-5A0A0K0K1A5 114 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 UMAD1C9J7I0 102 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 F8WDY8 70 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 ARPC5O15511 151 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 TLX1NBP0CAT3 122 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 FCER1GP30273 86 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 C10orf25Q5T742 122 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 UNQ6190/PRO20217Q6UXQ8 127 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 KRTAP7-1Q8IUC3 87 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 SMIM12Q96EX1 92 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 FAM210AQ96ND0 272 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 SMDT1Q9H4I9 107 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 GNG13Q9P2W3 67 aa4.29□□□□□ -1.72
VPS4A-203ENST00000564399 TPRXLQ17RH7 258 aa4.28□□□□□ -1.72
VPS4A-203ENST00000564399 MANBALQ9NQG1 85 aa4.28□□□□□ -1.72
VPS4A-203ENST00000564399 MED9Q9NWA0 146 aa4.28□□□□□ -1.72
VPS4A-203ENST00000564399 C6orf48Q9UBA6 75 aa4.28□□□□□ -1.72
VPS4A-203ENST00000564399 TRBV20OR9-2A0A075B6H5 130 aa4.27□□□□□ -1.73
VPS4A-203ENST00000564399 TRBV27A0A0K0K1C4 114 aa4.27□□□□□ -1.73
VPS4A-203ENST00000564399 POLR2KP53803 58 aaKnown RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 194.9 ms