RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 APOA1P02647 267 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 XCL1P47992 114 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 UBE2L3P68036 154 aaKnown RBP2.66□□□□□ -1.98
VPS35-204ENST00000563884 SPANXN2Q5MJ10 180 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 PP632Q6XCG6 107 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 GOLT1AQ6ZVE7 132 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 TMEM252Q8N6L7 170 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 TMEM229BQ8NBD8 167 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 OR5A1Q8NGJ0 315 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 OR5C1Q8NGR4 320 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 C15orf40Q8WUR7 153 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 HYLS1Q96M11 299 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 VCXQ9H320 206 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 OTORQ9NRC9 128 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 KCNIP2Q9NS61 270 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 BLOC1S6Q9UL45 172 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 B4DEV8 164 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 BCE1O60756 84 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 SPINK1P00995 79 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 TAS2R30P59541 319 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 SSBP1Q04837 148 aaKnown RBP2.65□□□□□ -1.99
VPS35-204ENST00000563884 BAXQ07812 192 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 CNPY1Q3B7I2 92 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 DNLZQ5SXM8 178 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 AP3S1Q92572 193 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 FXYD5Q96DB9 178 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 UQCC1Q9NVA1 299 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 MTFP1Q9UDX5 166 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 RSL24D1Q9UHA3 163 aaKnown RBP2.65□□□□□ -1.99
VPS35-204ENST00000563884 SCP2D1Q9UJQ7 156 aa2.65□□□□□ -1.99
VPS35-204ENST00000563884 KMT2DO14686 5537 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 CCL25O15444 150 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 ARMS2P0C7Q2 107 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 TLX1NBP0CAT3 122 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 SMIM17P0DL12 118 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 LGALS3P17931 250 aaKnown RBP2.64□□□□□ -1.99
VPS35-204ENST00000563884 ZNF80P51504 273 aaPredicted RBP2.64□□□□□ -1.99
VPS35-204ENST00000563884 TAS2R45P59539 299 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 KHDC3LQ587J8 217 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 SAPCD1Q5SSQ6 148 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 CD164L2Q6UWJ8 174 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 C2orf66Q6UXQ4 117 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 BTF3L4Q96K17 158 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 FAM167A-AS1Q96KT0 104 aa2.64□□□□□ -1.99
VPS35-204ENST00000563884 MRPL35Q9NZE8 188 aaKnown RBP2.64□□□□□ -1.99
VPS35-204ENST00000563884 UBE2L5PA0A1B0GUS4 154 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 FABP5P3A8MUU1 101 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 COX7A2LO14548 114 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 NDUFA1O15239 70 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 SLC25A20O43772 301 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 AKAIN1P0CW23 69 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 ZNF25P17030 456 aaPredicted RBP2.63□□□□□ -1.99
VPS35-204ENST00000563884 UBE2AP49459 152 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 RPS29P62273 56 aaKnown RBP2.63□□□□□ -1.99
VPS35-204ENST00000563884 COTL1Q14019 142 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 RNASEKQ6P5S7 137 aaKnown RBP2.63□□□□□ -1.99
VPS35-204ENST00000563884 Q6Q795 121 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 MIR17HGQ75NE6 70 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 TMEM101Q96IK0 257 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 LCE3DQ9BYE3 92 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 C11orf1Q9H5F2 150 aa2.63□□□□□ -1.99
VPS35-204ENST00000563884 M0R036 132 aa2.62□□□□□ -1.99
VPS35-204ENST00000563884 HPGDSO60760 199 aa2.62□□□□□ -1.99
VPS35-204ENST00000563884 FGF7P21781 194 aa2.62□□□□□ -1.99
VPS35-204ENST00000563884 TMBIM6P55061 237 aa2.62□□□□□ -1.99
VPS35-204ENST00000563884 RPS20P60866 119 aaKnown RBP2.62□□□□□ -1.99
VPS35-204ENST00000563884 MRPS10P82664 201 aaKnown RBP2.62□□□□□ -1.99
VPS35-204ENST00000563884 SPAG11BQ08648 103 aa2.62□□□□□ -1.99
VPS35-204ENST00000563884 TMEM241Q24JQ0 296 aa2.62□□□□□ -1.99
VPS35-204ENST00000563884 TMEM128Q5BJH2 165 aa2.62□□□□□ -1.99
VPS35-204ENST00000563884 LYZL1Q6UWQ5 148 aa2.62□□□□□ -1.99
VPS35-204ENST00000563884 ZNF471Q9BX82 626 aaPredicted RBP2.62□□□□□ -1.99
VPS35-204ENST00000563884 KRTAP2-1Q9BYU5 128 aa2.62□□□□□ -1.99
VPS35-204ENST00000563884 SMDT1Q9H4I9 107 aa2.62□□□□□ -1.99
VPS35-204ENST00000563884 LINC00959A0A1B0GUT2 108 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 G3V3Q6 166 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 L7N2F9 121 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 MT2AP02795 61 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 CTRLP40313 264 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 KRTAP10-10P60014 251 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 HBG1P69891 147 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 HBG2P69892 147 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 FLI1Q01543 452 aaPredicted RBP2.61□□□□□ -1.99
VPS35-204ENST00000563884 OR10D4PQ8NGN7 298 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 AP1S3Q96PC3 154 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 GSKIPQ9P0R6 139 aa2.61□□□□□ -1.99
VPS35-204ENST00000563884 FAM25AB3EWG3 89 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 FAM25CB3EWG5 89 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 FAM25GB3EWG6 89 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 TCRAP04437 139 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 RPL12P30050 165 aaKnown RBP2.6□□□□□ -1.99
VPS35-204ENST00000563884 S100A11P31949 105 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 TGFBR1P36897 503 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 BCAP31P51572 246 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 STX12Q86Y82 276 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 C5orf17Q8NAS9 161 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 PACRGQ96M98 296 aaPredicted RBP2.6□□□□□ -1.99
VPS35-204ENST00000563884 NPCDR1Q9BY65 106 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 MBD2Q9UBB5 411 aa2.6□□□□□ -1.99
VPS35-204ENST00000563884 TP73-AS1Q9UF72 201 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms