RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 SPRR4Q96PI1 79 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 MGST2Q99735 147 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 TP53AIP1Q9HCN2 124 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 NPVFQ9HCQ7 196 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 NDUFA4L2Q9NRX3 87 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 DSTQ03001 7570 aaKnown RBP-0.15□□□□□ -2.43
SPG11-222ENST00000560435 PPRC1Q5VV67 1664 aaKnown RBP-0.15□□□□□ -2.43
SPG11-222ENST00000560435 PLCE1Q9P212 2302 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 PATJQ8NI35 1801 aa-0.15□□□□□ -2.43
SPG11-222ENST00000560435 PRDM2Q13029 1718 aa-0.16□□□□□ -2.43
SPG11-222ENST00000560435 ARAP2Q8WZ64 1704 aa-0.16□□□□□ -2.43
SPG11-222ENST00000560435 NWD2Q9ULI1 1742 aa-0.16□□□□□ -2.43
SPG11-222ENST00000560435 PI4KAP42356 2102 aa-0.16□□□□□ -2.43
SPG11-222ENST00000560435 DOCK1Q14185 1865 aa-0.16□□□□□ -2.43
SPG11-222ENST00000560435 KMT2AQ03164 3969 aa-0.16□□□□□ -2.43
SPG11-222ENST00000560435 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.16□□□□□ -2.43
SPG11-222ENST00000560435 CTXND1A0A1B0GTU2 59 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 IGLC7A0M8Q6 106 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 F8VRH5 84 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 UQCR11O14957 56 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 SSSCA1O60232 199 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 APOC2P02655 101 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 S100A3P33764 101 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 SPRR2BP35325 72 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 TPPP2P59282 170 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 HAMPP81172 84 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 COX17Q14061 63 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 TMEM170BQ5T4T1 132 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 Q6JHZ5 121 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 COMMD6Q7Z4G1 85 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 C5orf38Q86SI9 138 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 C8orf59Q8N0T1 100 aaPredicted RBP-0.16□□□□□ -2.44
SPG11-222ENST00000560435 C1orf54Q8WWF1 131 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 DYNLRB1Q9NP97 96 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 CDC42SE2Q9NRR3 84 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 LINC00474Q9P2X8 69 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 V9GYH0 126 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 USF3Q68DE3 2245 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 LPAP08519 4548 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 FOCADQ5VW36 1801 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 ZNF236Q9UL36 1845 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 SPTBN1Q01082 2364 aaKnown RBP-0.16□□□□□ -2.44
SPG11-222ENST00000560435 CPSF1Q10570 1443 aaKnown RBP-0.16□□□□□ -2.44
SPG11-222ENST00000560435 C10orf71Q711Q0 1435 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 NBEAL1Q6ZS30 2694 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 CHD8Q9HCK8 2581 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 MBD5Q9P267 1494 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 APC2O95996 2303 aa-0.16□□□□□ -2.44
SPG11-222ENST00000560435 MAP1BP46821 2468 aaKnown RBP-0.16□□□□□ -2.44
SPG11-222ENST00000560435 FLNBO75369 2602 aaKnown RBP-0.17□□□□□ -2.44
SPG11-222ENST00000560435 TGP01266 2768 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 RIMS1Q86UR5 1692 aaKnown RBP-0.17□□□□□ -2.44
SPG11-222ENST00000560435 MYO7BQ6PIF6 2116 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 TRBV6-1A0A0K0K1D8 114 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 LOC285095A0A1B0GVY8 99 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 OOSP1A8MZH6 123 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 HMGN4O00479 90 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 TNFP01375 233 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 COX6B1P14854 86 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 DCDP81605 110 aaKnown RBP-0.17□□□□□ -2.44
SPG11-222ENST00000560435 NAIPQ13075 1403 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 PIGYQ3MUY2 71 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 ERCC6L2Q5T890 1561 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 MRPL54Q6P161 138 aaKnown RBP-0.17□□□□□ -2.44
SPG11-222ENST00000560435 TMEM263Q8WUH6 116 aaKnown RBP-0.17□□□□□ -2.44
SPG11-222ENST00000560435 PP6455Q8WZ26 134 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 TSLPQ969D9 159 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 DPH3P1Q9H4G8 78 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 MUC2Q02817 5179 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 PAPPAQ13219 1627 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 A2ML1A8K2U0 1454 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 SHANK2Q9UPX8 1470 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 SPTA1P02549 2419 aa-0.17□□□□□ -2.44
SPG11-222ENST00000560435 MYH9P35579 1960 aaKnown RBP-0.17□□□□□ -2.44
SPG11-222ENST00000560435 KIF21AQ7Z4S6 1674 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 CSPG4Q6UVK1 2322 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 TULP4Q9NRJ4 1543 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 NF1P21359 2839 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 GOLGA4Q13439 2230 aaKnown RBP-0.18□□□□□ -2.44
SPG11-222ENST00000560435 STAB2Q8WWQ8 2551 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 EP300Q09472 2414 aaPredicted RBP-0.18□□□□□ -2.44
SPG11-222ENST00000560435 SMG6Q86US8 1419 aaKnown RBP-0.18□□□□□ -2.44
SPG11-222ENST00000560435 NSD3Q9BZ95 1437 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 FAM25AB3EWG3 89 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 FAM25CB3EWG5 89 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 FAM25GB3EWG6 89 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 SFT2D2O95562 160 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 IFNGP01579 166 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 APOC3P02656 99 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 SPRR1BP22528 89 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 CATR1Q13166 79 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 MYOZ3Q8TDC0 251 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 FAM167A-AS1Q96KT0 104 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 TSC22D3Q99576 134 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 RAPGEF6Q8TEU7 1601 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 SBF2Q86WG5 1849 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 SPEF2Q9C093 1822 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 WNK1Q9H4A3 2382 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 MYOM1P52179 1685 aa-0.18□□□□□ -2.44
SPG11-222ENST00000560435 QRICH2Q9H0J4 1663 aa-0.18□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms