RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 GFRA4Q9GZZ7 299 aa4.72□□□□□ -1.65
SPG11-213ENST00000558988 RPP21Q9H633 154 aaKnown RBP4.72□□□□□ -1.65
SPG11-213ENST00000558988 BIN3Q9NQY0 253 aa4.72□□□□□ -1.65
SPG11-213ENST00000558988 PANO1I0J062 215 aa4.71□□□□□ -1.66
SPG11-213ENST00000558988 FOXA3P55318 350 aaPredicted RBP4.71□□□□□ -1.66
SPG11-213ENST00000558988 AMMECR1LQ6DCA0 310 aa4.71□□□□□ -1.66
SPG11-213ENST00000558988 RNASEKQ6P5S7 137 aaKnown RBP4.71□□□□□ -1.66
SPG11-213ENST00000558988 ALKAL2Q6UX46 152 aa4.71□□□□□ -1.66
SPG11-213ENST00000558988 SLC51BQ86UW2 128 aa4.71□□□□□ -1.66
SPG11-213ENST00000558988 NIT2Q9NQR4 276 aa4.71□□□□□ -1.66
SPG11-213ENST00000558988 PRR34Q9NV39 138 aa4.71□□□□□ -1.66
SPG11-213ENST00000558988 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.7□□□□□ -1.66
SPG11-213ENST00000558988 IGKV2-29A2NJV5 120 aaPredicted RBP4.7□□□□□ -1.66
SPG11-213ENST00000558988 K7EN84 100 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 GATCO43716 136 aaKnown RBP4.7□□□□□ -1.66
SPG11-213ENST00000558988 CHTF8P0CG12 524 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 CTRLP40313 264 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 HIGD2BQ4VC39 106 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 KRTAP26-1Q6PEX3 210 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 SMIM15Q7Z3B0 74 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 TCTE3Q8IZS6 198 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 C9orf62Q8N4C0 152 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 C9orf163Q8N9P6 203 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 GATD1Q8NB37 220 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 OCC1Q8TAD7 63 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 SMIM12Q96EX1 92 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 PGLYRP4Q96LB8 373 aa4.7□□□□□ -1.66
SPG11-213ENST00000558988 APOBP04114 4563 aaKnown RBP4.69□□□□□ -1.66
SPG11-213ENST00000558988 KRTAP10-4P60372 401 aaPredicted RBP4.69□□□□□ -1.66
SPG11-213ENST00000558988 AKAP14Q86UN6 197 aa4.69□□□□□ -1.66
SPG11-213ENST00000558988 SRRM2Q9UQ35 2752 aaKnown RBP4.68□□□□□ -1.66
SPG11-213ENST00000558988 DNAH5Q8TE73 4624 aa4.68□□□□□ -1.66
SPG11-213ENST00000558988 IGHV3-64A0A075B6Q5 118 aa4.68□□□□□ -1.66
SPG11-213ENST00000558988 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.68□□□□□ -1.66
SPG11-213ENST00000558988 TRAV8-4A0A0B4J246 113 aa4.68□□□□□ -1.66
SPG11-213ENST00000558988 IGKV2-24A0A0C4DH68 120 aa4.68□□□□□ -1.66
SPG11-213ENST00000558988 APCSP02743 223 aa4.68□□□□□ -1.66
SPG11-213ENST00000558988 HNRNPA3P51991 378 aaKnown RBP4.68□□□□□ -1.66
SPG11-213ENST00000558988 SDIM1Q6ZPB5 146 aa4.68□□□□□ -1.66
SPG11-213ENST00000558988 GTSF1Q8WW33 167 aa4.68□□□□□ -1.66
SPG11-213ENST00000558988 BORCS7Q96B45 105 aa4.68□□□□□ -1.66
SPG11-213ENST00000558988 IGLV5-39A0A0G2JS06 123 aa4.67□□□□□ -1.66
SPG11-213ENST00000558988 A0A1B0GUV1 79 aa4.67□□□□□ -1.66
SPG11-213ENST00000558988 SDHAF1A6NFY7 115 aa4.67□□□□□ -1.66
SPG11-213ENST00000558988 FGF6P10767 208 aa4.67□□□□□ -1.66
SPG11-213ENST00000558988 PMCHP20382 165 aa4.67□□□□□ -1.66
SPG11-213ENST00000558988 TAGLN2P37802 199 aaKnown RBP4.67□□□□□ -1.66
SPG11-213ENST00000558988 XCL1P47992 114 aa4.67□□□□□ -1.66
SPG11-213ENST00000558988 CHCHD10Q8WYQ3 142 aaPredicted RBP4.67□□□□□ -1.66
SPG11-213ENST00000558988 EIF5A2Q9GZV4 153 aaKnown RBP4.67□□□□□ -1.66
SPG11-213ENST00000558988 TMEM242Q9NWH2 141 aa4.67□□□□□ -1.66
SPG11-213ENST00000558988 C5orf52A6NGY3 159 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 A8MWL6 223 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 VCYO14598 125 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 NCR2O95944 276 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 CNBPP62633 177 aaKnown RBP4.66□□□□□ -1.66
SPG11-213ENST00000558988 COX6A2Q02221 97 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 MAJINQ3KP22 176 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 LCE3AQ5TA76 89 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 C15orf56Q8N910 161 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 LYPD6BQ8NI32 183 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 LINC00526Q96FQ7 95 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 TMEM101Q96IK0 257 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 BTF3L4Q96K17 158 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 SMIM7Q9BQ49 75 aa4.66□□□□□ -1.66
SPG11-213ENST00000558988 ZNF727A8MUV8 499 aa4.65□□□□□ -1.67
SPG11-213ENST00000558988 TMEM250H0YL14 139 aa4.65□□□□□ -1.67
SPG11-213ENST00000558988 SMKR1H3BMG3 65 aa4.65□□□□□ -1.67
SPG11-213ENST00000558988 OXTP01178 125 aa4.65□□□□□ -1.67
SPG11-213ENST00000558988 OR5A1Q8NGJ0 315 aa4.65□□□□□ -1.67
SPG11-213ENST00000558988 SPACA4Q8TDM5 124 aa4.65□□□□□ -1.67
SPG11-213ENST00000558988 CNFNQ9BYD5 112 aa4.65□□□□□ -1.67
SPG11-213ENST00000558988 ST20Q9HBF5 79 aa4.65□□□□□ -1.67
SPG11-213ENST00000558988 A0A1B0GUT8 65 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 HIGD1CA8MV81 97 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 I3L3M4 83 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 PHOX2AO14813 284 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 CCL25O15444 150 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 TSHBP01222 138 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 RPS10P46783 165 aaKnown RBP4.64□□□□□ -1.67
SPG11-213ENST00000558988 RNASE13Q5GAN3 156 aaKnown RBP4.64□□□□□ -1.67
SPG11-213ENST00000558988 TEX261Q6UWH6 196 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 FAM231DQ6ZW35 169 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 LINC01551Q86U37 167 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 AMN1Q8IY45 258 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 MPLKIPQ8TAP9 179 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 C7orf33Q8WU49 177 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 MRAP2Q96G30 205 aa4.64□□□□□ -1.67
SPG11-213ENST00000558988 FCER1GP30273 86 aa4.63□□□□□ -1.67
SPG11-213ENST00000558988 STPG4Q8N801 248 aa4.63□□□□□ -1.67
SPG11-213ENST00000558988 TSKUQ8WUA8 353 aa4.63□□□□□ -1.67
SPG11-213ENST00000558988 A0A096LNI7 61 aa4.62□□□□□ -1.67
SPG11-213ENST00000558988 GVQW2A0A096LPI5 108 aaPredicted RBP4.62□□□□□ -1.67
SPG11-213ENST00000558988 LINC00959A0A1B0GUT2 108 aa4.62□□□□□ -1.67
SPG11-213ENST00000558988 C7orf77A4D0Y5 90 aa4.62□□□□□ -1.67
SPG11-213ENST00000558988 FAM231BA6NCW3 169 aa4.62□□□□□ -1.67
SPG11-213ENST00000558988 H7C423 109 aa4.62□□□□□ -1.67
SPG11-213ENST00000558988 NDUFS6O75380 124 aaKnown RBP4.62□□□□□ -1.67
SPG11-213ENST00000558988 ZNF25P17030 456 aaPredicted RBP4.62□□□□□ -1.67
SPG11-213ENST00000558988 CIRBPQ14011 172 aaKnown RBP4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms