RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 Q6ZSN1 163 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 DAZ4Q86SG3 579 aaKnown RBP5.24□□□□□ -1.57
VPS13C-206ENST00000558338 C1orf158Q8N1D5 194 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 LINC01006Q8NI28 216 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 C16orf74Q96GX8 76 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 DAZ3Q9NR90 486 aaKnown RBP5.24□□□□□ -1.57
VPS13C-206ENST00000558338 PRO1854Q9UHT4 67 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 CREBBPQ92793 2442 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 H3BMG7 143 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 J3QKU1 62 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 IGHV3-30-3P0DP02 117 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 Q6ZUT4 128 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 ATP6V0E2Q8NHE4 81 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 SPANXDQ9BXN6 97 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 SPANXCQ9NY87 97 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 UTP20O75691 2785 aaKnown RBP5.23□□□□□ -1.57
VPS13C-206ENST00000558338 NAV2Q8IVL1 2488 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.23□□□□□ -1.57
VPS13C-206ENST00000558338 IGHV3OR16-12A0A075B7B8 117 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 LOC107984156A0A0G2JMH3 177 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 A0A0J9YXY3 114 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 IGKV2-29A2NJV5 120 aaPredicted RBP5.23□□□□□ -1.57
VPS13C-206ENST00000558338 FAM229AH3BQW9 127 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 TIMM17BO60830 172 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 IGLV1-51P01701 117 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 CFC1BP0CG36 223 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 CFC1P0CG37 223 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 PLA2G2AP14555 144 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 HILS1P60008 231 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 ARL17AQ8IVW1 177 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 FAM104AQ969W3 186 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 VSIG2Q96IQ7 327 aa5.23□□□□□ -1.57
VPS13C-206ENST00000558338 CSDC2Q9Y534 153 aaKnown RBP5.23□□□□□ -1.57
VPS13C-206ENST00000558338 USP9YO00507 2555 aaPredicted RBP5.23□□□□□ -1.57
VPS13C-206ENST00000558338 IGHV3-64A0A075B6Q5 118 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 IGLV5-45A0A087WSX0 123 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 TEX48A0A1B0GUV7 120 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 PRM2P04554 102 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 HERVK_113P63121 156 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 ZFAND6Q6FIF0 208 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 FAM19A3Q7Z5A8 133 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 NDUFA12Q9UI09 145 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 PRO0461Q9UI25 63 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 CRYBG3Q68DQ2 2970 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 IGHV3-38A0A0C4DH36 116 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 H7C423 109 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 PRYO14603 147 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 PSMB2P49721 201 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 WFDC2Q14508 124 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 CD164L2Q6UWJ8 174 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 COPS9Q8WXC6 57 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 RNF183Q96D59 192 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 ERG28Q9UKR5 140 aa5.22□□□□□ -1.57
VPS13C-206ENST00000558338 LRRK2Q5S007 2527 aa5.21□□□□□ -1.58
VPS13C-206ENST00000558338 PTPN13Q12923 2485 aa5.21□□□□□ -1.58
VPS13C-206ENST00000558338 IFITM1P13164 125 aa5.21□□□□□ -1.58
VPS13C-206ENST00000558338 HERV-K104P63124 156 aa5.21□□□□□ -1.58
VPS13C-206ENST00000558338 MIAQ16674 131 aa5.21□□□□□ -1.58
VPS13C-206ENST00000558338 CEMP1Q6PRD7 247 aaPredicted RBP5.21□□□□□ -1.58
VPS13C-206ENST00000558338 MUSTN1Q8IVN3 82 aa5.21□□□□□ -1.58
VPS13C-206ENST00000558338 GTSF1LQ9H1H1 148 aa5.21□□□□□ -1.58
VPS13C-206ENST00000558338 TRBV6-4A0A1B0GX49 114 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 UBE2L6O14933 153 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 NDUFA1O15239 70 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 IGHV3-33P01772 117 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 SCGB1C2P0DMR2 95 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 CIRBPQ14011 172 aaKnown RBP5.2□□□□□ -1.58
VPS13C-206ENST00000558338 RNASE13Q5GAN3 156 aaKnown RBP5.2□□□□□ -1.58
VPS13C-206ENST00000558338 C6orf226Q5I0X4 101 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 Q6ZTI0 123 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 OVOL2Q9BRP0 275 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 TRAV8-3A0A0A6YYJ7 113 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 M0QXV9 152 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 SPINK8P0C7L1 97 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 ETDBQ3ZM63 59 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 LINC01620Q4KN68 170 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 TMEM101Q96IK0 257 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 LITAFQ99732 161 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 TMEM243Q9BU79 118 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 NOP10Q9NPE3 64 aaKnown RBP5.2□□□□□ -1.58
VPS13C-206ENST00000558338 Q9UF83 564 aa5.2□□□□□ -1.58
VPS13C-206ENST00000558338 POLQO75417 2590 aa5.19□□□□□ -1.58
VPS13C-206ENST00000558338 SORL1Q92673 2214 aa5.19□□□□□ -1.58
VPS13C-206ENST00000558338 TRGV2A0A075B6R0 118 aa5.19□□□□□ -1.58
VPS13C-206ENST00000558338 TCL1BO95988 128 aa5.19□□□□□ -1.58
VPS13C-206ENST00000558338 Q1RN00 199 aa5.19□□□□□ -1.58
VPS13C-206ENST00000558338 SBSPONQ8IVN8 264 aa5.19□□□□□ -1.58
VPS13C-206ENST00000558338 C19orf73Q9NVV2 129 aa5.19□□□□□ -1.58
VPS13C-206ENST00000558338 AKAP9Q99996 3911 aa5.19□□□□□ -1.58
VPS13C-206ENST00000558338 CSMD2Q7Z408 3487 aa5.18□□□□□ -1.58
VPS13C-206ENST00000558338 IGLV5-39A0A0G2JS06 123 aa5.18□□□□□ -1.58
VPS13C-206ENST00000558338 GAGE12JA6NER3 117 aa5.18□□□□□ -1.58
VPS13C-206ENST00000558338 PLA2G1BP04054 148 aaKnown RBP5.18□□□□□ -1.58
VPS13C-206ENST00000558338 GIG44P09565 113 aaPredicted RBP5.18□□□□□ -1.58
VPS13C-206ENST00000558338 RPL35AP18077 110 aaKnown RBP5.18□□□□□ -1.58
VPS13C-206ENST00000558338 GAGE4Q13068 117 aa5.18□□□□□ -1.58
VPS13C-206ENST00000558338 GAGE5Q13069 117 aa5.18□□□□□ -1.58
VPS13C-206ENST00000558338 CDKN2A-AS1Q9UH64 79 aa5.18□□□□□ -1.58
VPS13C-206ENST00000558338 ZANQ9Y493 2812 aa5.18□□□□□ -1.58
VPS13C-206ENST00000558338 TRGV4A0A0C4DH28 118 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms