RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 UBE2D4Q9Y2X8 147 aa11.96□□□□□ -0.49
LDLR-206ENST00000557958 DEFB130BP0DP73 79 aa11.95□□□□□ -0.5
LDLR-206ENST00000557958 DEFB130AP0DP74 79 aa11.95□□□□□ -0.5
LDLR-206ENST00000557958 TMEM170BQ5T4T1 132 aa11.95□□□□□ -0.5
LDLR-206ENST00000557958 AMELXQ99217 191 aa11.95□□□□□ -0.5
LDLR-206ENST00000557958 OPRPNQ99935 248 aaPredicted RBP11.95□□□□□ -0.5
LDLR-206ENST00000557958 CHAC1Q9BUX1 264 aa11.95□□□□□ -0.5
LDLR-206ENST00000557958 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.95□□□□□ -0.5
LDLR-206ENST00000557958 IGKV2-29A2NJV5 120 aaPredicted RBP11.95□□□□□ -0.5
LDLR-206ENST00000557958 C21orf62-AS1Q17RA5 79 aa11.95□□□□□ -0.5
LDLR-206ENST00000557958 DGAT2L7PQ6IED9 249 aa11.95□□□□□ -0.5
LDLR-206ENST00000557958 OR5A1Q8NGJ0 315 aa11.95□□□□□ -0.5
LDLR-206ENST00000557958 GTSF1LQ9H1H1 148 aa11.95□□□□□ -0.5
LDLR-206ENST00000557958 H3BUT2 72 aa11.94□□□□□ -0.5
LDLR-206ENST00000557958 MIFP14174 115 aa11.94□□□□□ -0.5
LDLR-206ENST00000557958 FHL2Q14192 279 aa11.94□□□□□ -0.5
LDLR-206ENST00000557958 PKD1L1Q8TDX9 2849 aa11.94□□□□□ -0.5
LDLR-206ENST00000557958 A0A1W2PPM0 123 aa11.93□□□□□ -0.5
LDLR-206ENST00000557958 MRPS36P82909 103 aaKnown RBP11.93□□□□□ -0.5
LDLR-206ENST00000557958 RNF151Q2KHN1 245 aa11.93□□□□□ -0.5
LDLR-206ENST00000557958 TRBV25-1A0A075B6N4 114 aa11.93□□□□□ -0.5
LDLR-206ENST00000557958 MYMXA0A1B0GTQ4 84 aa11.92□□□□□ -0.5
LDLR-206ENST00000557958 TTTY13Q9BZ97 58 aa11.91□□□□□ -0.5
LDLR-206ENST00000557958 CMYA5Q8N3K9 4069 aa11.91□□□□□ -0.5
LDLR-206ENST00000557958 UBE2L6O14933 153 aa11.91□□□□□ -0.5
LDLR-206ENST00000557958 SMIM13P0DJ93 91 aa11.91□□□□□ -0.5
LDLR-206ENST00000557958 TAL2Q16559 108 aa11.91□□□□□ -0.5
LDLR-206ENST00000557958 FAM222AQ5U5X8 452 aa11.91□□□□□ -0.5
LDLR-206ENST00000557958 CEMP1Q6PRD7 247 aaPredicted RBP11.91□□□□□ -0.5
LDLR-206ENST00000557958 VPS25Q9BRG1 176 aa11.91□□□□□ -0.5
LDLR-206ENST00000557958 TMEM243Q9BU79 118 aa11.91□□□□□ -0.5
LDLR-206ENST00000557958 TM2D2Q9BX73 214 aa11.91□□□□□ -0.5
LDLR-206ENST00000557958 CSDC2Q9Y534 153 aaKnown RBP11.91□□□□□ -0.5
LDLR-206ENST00000557958 ANK2Q01484 3957 aa11.9□□□□□ -0.5
LDLR-206ENST00000557958 H7C423 109 aa11.9□□□□□ -0.5
LDLR-206ENST00000557958 DEFB121Q5J5C9 76 aa11.9□□□□□ -0.5
LDLR-206ENST00000557958 RNF183Q96D59 192 aa11.9□□□□□ -0.5
LDLR-206ENST00000557958 IGHV4-28A0A0C4DH34 117 aa11.89□□□□□ -0.51
LDLR-206ENST00000557958 A0A0J9YXV3 536 aa11.89□□□□□ -0.51
LDLR-206ENST00000557958 FABP2P12104 132 aa11.89□□□□□ -0.51
LDLR-206ENST00000557958 GCSHP23434 173 aa11.89□□□□□ -0.51
LDLR-206ENST00000557958 FXYD2P54710 66 aa11.89□□□□□ -0.51
LDLR-206ENST00000557958 Q6ZUT4 128 aa11.89□□□□□ -0.51
LDLR-206ENST00000557958 PRO0255Q9UI72 69 aa11.89□□□□□ -0.51
LDLR-206ENST00000557958 SPCS1Q9Y6A9 102 aa11.89□□□□□ -0.51
LDLR-206ENST00000557958 TINCRA0A1B0GVN0 87 aa11.88□□□□□ -0.51
LDLR-206ENST00000557958 ZNF815PA8K554 130 aa11.88□□□□□ -0.51
LDLR-206ENST00000557958 ZNF22P17026 224 aaPredicted RBP11.88□□□□□ -0.51
LDLR-206ENST00000557958 NTM-AS1Q6ZSK4 140 aa11.88□□□□□ -0.51
LDLR-206ENST00000557958 MAPKAPK5-AS1Q8N8E1 139 aa11.88□□□□□ -0.51
LDLR-206ENST00000557958 FAM104AQ969W3 186 aa11.88□□□□□ -0.51
LDLR-206ENST00000557958 TMEM101Q96IK0 257 aa11.88□□□□□ -0.51
LDLR-206ENST00000557958 LOC100131303A0A0U1RQF7 123 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 TMEM223A0PJW6 202 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 DAD1P61803 113 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 CEND1Q8N111 149 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 RAB37Q96AX2 223 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 TEX48A0A1B0GUV7 120 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 A8MZ25 164 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 LINC00694P0DN24 101 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 LGALS3P17931 250 aaKnown RBP11.87□□□□□ -0.51
LDLR-206ENST00000557958 SCGB1D4Q6XE38 83 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 SBSPONQ8IVN8 264 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 Q8NAQ8 132 aa11.87□□□□□ -0.51
LDLR-206ENST00000557958 LEPROTO15243 131 aa11.86□□□□□ -0.51
LDLR-206ENST00000557958 DEFB4AO15263 64 aa11.86□□□□□ -0.51
LDLR-206ENST00000557958 RNASE13Q5GAN3 156 aaKnown RBP11.86□□□□□ -0.51
LDLR-206ENST00000557958 PLEKHB2Q96CS7 222 aa11.86□□□□□ -0.51
LDLR-206ENST00000557958 GEMIN7Q9H840 131 aaKnown RBP11.86□□□□□ -0.51
LDLR-206ENST00000557958 J3QQQ9 107 aa11.85□□□□□ -0.51
LDLR-206ENST00000557958 SPART-AS1P0CW21 52 aa11.85□□□□□ -0.51
LDLR-206ENST00000557958 NAA38Q9BRA0 125 aaKnown RBP11.85□□□□□ -0.51
LDLR-206ENST00000557958 TRBV6-8A0A0A6YYG3 113 aa11.85□□□□□ -0.51
LDLR-206ENST00000557958 MRAPQ8TCY5 172 aa11.85□□□□□ -0.51
LDLR-206ENST00000557958 GYPEP15421 78 aa11.84□□□□□ -0.51
LDLR-206ENST00000557958 UBE2D1P51668 147 aa11.84□□□□□ -0.51
LDLR-206ENST00000557958 HIST1H4GQ99525 98 aa11.84□□□□□ -0.51
LDLR-206ENST00000557958 RETNQ9HD89 108 aa11.84□□□□□ -0.51
LDLR-206ENST00000557958 K7EIL1 84 aa11.83□□□□□ -0.52
LDLR-206ENST00000557958 PAX4O43316 350 aa11.83□□□□□ -0.52
LDLR-206ENST00000557958 ATP5G1P05496 136 aa11.83□□□□□ -0.52
LDLR-206ENST00000557958 ATP6V0E2Q8NHE4 81 aa11.83□□□□□ -0.52
LDLR-206ENST00000557958 TIRAPP58753 221 aa11.83□□□□□ -0.52
LDLR-206ENST00000557958 HERVK_113P63121 156 aa11.82□□□□□ -0.52
LDLR-206ENST00000557958 CDC42SE2Q9NRR3 84 aa11.81□□□□□ -0.52
LDLR-206ENST00000557958 NHP2Q9NX24 153 aaKnown RBP11.81□□□□□ -0.52
LDLR-206ENST00000557958 KPRPQ5T749 579 aaPredicted RBP11.8□□□□□ -0.52
LDLR-206ENST00000557958 CHCHD5Q9BSY4 110 aa11.8□□□□□ -0.52
LDLR-206ENST00000557958 A0A1B0GWB2 263 aa11.8□□□□□ -0.52
LDLR-206ENST00000557958 K7ERJ3 54 aa11.8□□□□□ -0.52
LDLR-206ENST00000557958 FAM19A3Q7Z5A8 133 aa11.8□□□□□ -0.52
LDLR-206ENST00000557958 IGLV5-45A0A087WSX0 123 aa11.79□□□□□ -0.52
LDLR-206ENST00000557958 IGHV1-58A0A0C4DH39 117 aa11.79□□□□□ -0.52
LDLR-206ENST00000557958 IGLL5B9A064 214 aa11.78□□□□□ -0.52
LDLR-206ENST00000557958 TSPEAR-AS2P59090 65 aa11.78□□□□□ -0.52
LDLR-206ENST00000557958 KRTAP21-3Q3LHN1 58 aa11.78□□□□□ -0.52
LDLR-206ENST00000557958 IGHV3-64A0A075B6Q5 118 aa11.78□□□□□ -0.52
LDLR-206ENST00000557958 IGHV3-30-3P0DP02 117 aa11.78□□□□□ -0.52
LDLR-206ENST00000557958 SRSF9Q13242 221 aaKnown RBP eCLIP11.78□□□□□ -0.52
LDLR-206ENST00000557958 CELA1Q9UNI1 258 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms