RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PYY3Q5JQD4 70 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 Q8N3U1 123 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 RASL10AQ92737 203 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 PTH2Q96A98 100 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 C11orf21Q9P2W6 132 aa5.39□□□□□ -1.55
CCDC88C-214ENST00000557507 TNXBP22105 4242 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 TRAV4A0A0B4J268 109 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 IGHV3-16A0A0C4DH30 117 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 MUC21A0A0G2JKD1 596 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 MUC21A0A140T8X8 626 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 PRSS47A8MTI9 375 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 A8MWV9 139 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 GNRH2O43555 120 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 HBDP02042 147 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 PET117Q6UWS5 81 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 Q8N8P6 123 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 VAMP8Q9BV40 100 aa5.38□□□□□ -1.55
CCDC88C-214ENST00000557507 IGHV1-24A0A0C4DH33 117 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 LOC389332A0A1B0GUA5 103 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 PCP4L1A6NKN8 68 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 F5H697 171 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 M0R2P5 195 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 RHODO00212 210 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 NUPR1O60356 82 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 CIDEAO60543 219 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 ATP5LO75964 103 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 MGPP08493 103 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 RNASE3P12724 160 aaKnown RBP5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 IFI27P40305 119 aaPredicted RBP5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 HNRNPA3P51991 378 aaKnown RBP5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 LAGE3Q14657 143 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 C14orf178Q8N769 122 aaPredicted RBP5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 RNF185Q96GF1 192 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 C9orf85Q96MD7 179 aa5.37□□□□□ -1.55
CCDC88C-214ENST00000557507 TRAV8-6A0A0B4J262 113 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 LINC01546A6NGU7 62 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 VCYO14598 125 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 NPYP01303 97 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 GATA1P15976 413 aaPredicted RBP5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 FCER1GP30273 86 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 LINC00310P59036 64 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 SUMO2P61956 95 aaKnown RBP5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 RPL32P62910 135 aaKnown RBP5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 ZNF876PQ49A33 203 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 SH2D6Q7Z4S9 175 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 FAM19A2Q8N3H0 131 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 OR4C5Q8NGB2 326 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 CIRBP-AS1Q8TBR5 109 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 KIR2DL4Q99706 377 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 CHAC1Q9BUX1 264 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 ST20Q9HBF5 79 aa5.36□□□□□ -1.55
CCDC88C-214ENST00000557507 SYS1-DBNDD2H3BUS1 97 aa5.35□□□□□ -1.55
CCDC88C-214ENST00000557507 NCR2O95944 276 aa5.35□□□□□ -1.55
CCDC88C-214ENST00000557507 C3orf79P0CE67 100 aa5.35□□□□□ -1.55
CCDC88C-214ENST00000557507 ZNF56Q15929 161 aa5.35□□□□□ -1.55
CCDC88C-214ENST00000557507 LELP1Q5T871 98 aa5.35□□□□□ -1.55
CCDC88C-214ENST00000557507 BAALCQ8WXS3 180 aa5.35□□□□□ -1.55
CCDC88C-214ENST00000557507 TM2D2Q9BX73 214 aa5.35□□□□□ -1.55
CCDC88C-214ENST00000557507 SMKR1H3BMG3 65 aa5.34□□□□□ -1.55
CCDC88C-214ENST00000557507 MT1HL1P0DM35 61 aa5.34□□□□□ -1.55
CCDC88C-214ENST00000557507 SMCPP49901 116 aaPredicted RBP5.34□□□□□ -1.55
CCDC88C-214ENST00000557507 FAM74A4Q5TZK3 123 aa5.34□□□□□ -1.55
CCDC88C-214ENST00000557507 TEX43Q6ZNM6 134 aa5.34□□□□□ -1.55
CCDC88C-214ENST00000557507 SLC25A29Q8N8R3 303 aa5.34□□□□□ -1.55
CCDC88C-214ENST00000557507 SMIM2Q9BVW6 85 aa5.34□□□□□ -1.55
CCDC88C-214ENST00000557507 TRBV6-5A0A0K0K1A5 114 aa5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 RS1O15537 224 aa5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 SMAGPQ0VAQ4 97 aa5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 RHOHQ15669 191 aa5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 PAPPA-AS1Q5QFB9 102 aa5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 LCE2AQ5TA79 106 aaPredicted RBP5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 ZFP2Q6ZN57 461 aa5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 DAZ4Q86SG3 579 aaKnown RBP5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 NRACQ8N912 160 aa5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 IFI27L1Q96BM0 104 aa5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 DNAJC30Q96LL9 226 aa5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 DAZ3Q9NR90 486 aaKnown RBP5.33□□□□□ -1.56
CCDC88C-214ENST00000557507 IGHV3-73A0A0B4J1V6 119 aa5.32□□□□□ -1.56
CCDC88C-214ENST00000557507 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.32□□□□□ -1.56
CCDC88C-214ENST00000557507 PRSS1P07477 247 aa5.32□□□□□ -1.56
CCDC88C-214ENST00000557507 RPL37AP61513 92 aaKnown RBP5.32□□□□□ -1.56
CCDC88C-214ENST00000557507 Q6ZN92 141 aa5.32□□□□□ -1.56
CCDC88C-214ENST00000557507 URB1-AS1Q96HZ7 61 aa5.32□□□□□ -1.56
CCDC88C-214ENST00000557507 GTSF1LQ9H1H1 148 aa5.32□□□□□ -1.56
CCDC88C-214ENST00000557507 KIF25-AS1Q9Y6Z4 181 aa5.32□□□□□ -1.56
CCDC88C-214ENST00000557507 A0A087WWL8 130 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 TRAV8-3A0A0A6YYJ7 113 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 TRAV26-2A0A0B4J265 109 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 TRBV6-4A0A1B0GX49 114 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 I3L3M4 83 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 LINC00694P0DN24 101 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 DDTP30046 118 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 SPATA45Q537H7 98 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 CFAP126Q5VTH2 177 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 SUMO4Q6EEV6 95 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 MRPL52Q86TS9 123 aaKnown RBP5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 ATP6V0E2Q8NHE4 81 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 TMEM141Q96I45 108 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 SCGB3A1Q96QR1 104 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 PMCHL2Q9BQD1 86 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms