RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 RS1O15537 224 aa11.82□□□□□ -0.52
SHMT2-232ENST00000557487 HERVK_113P63121 156 aa11.82□□□□□ -0.52
SHMT2-232ENST00000557487 FAM19A3Q7Z5A8 133 aa11.82□□□□□ -0.52
SHMT2-232ENST00000557487 SPG11Q96JI7 2443 aa11.82□□□□□ -0.52
SHMT2-232ENST00000557487 NHLRC4P0CG21 123 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-232ENST00000557487 PEMTQ9UBM1 199 aa11.81□□□□□ -0.52
SHMT2-232ENST00000557487 PRRC2AP48634 2157 aaKnown RBP11.8□□□□□ -0.52
SHMT2-232ENST00000557487 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-232ENST00000557487 IGKV2-29A2NJV5 120 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-232ENST00000557487 ACYP1P07311 99 aa11.8□□□□□ -0.52
SHMT2-232ENST00000557487 HTN1P15515 57 aa11.8□□□□□ -0.52
SHMT2-232ENST00000557487 POLQO75417 2590 aa11.8□□□□□ -0.52
SHMT2-232ENST00000557487 NAV2Q8IVL1 2488 aa11.8□□□□□ -0.52
SHMT2-232ENST00000557487 IGLV5-39A0A0G2JS06 123 aa11.8□□□□□ -0.52
SHMT2-232ENST00000557487 RNASE13Q5GAN3 156 aaKnown RBP11.8□□□□□ -0.52
SHMT2-232ENST00000557487 KRTAP1-3Q8IUG1 177 aa11.8□□□□□ -0.52
SHMT2-232ENST00000557487 C11orf72Q8NBR9 251 aa11.8□□□□□ -0.52
SHMT2-232ENST00000557487 GAGE12JA6NER3 117 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 CRLF1O75462 422 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 GAGE7O76087 117 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 GAGE12FP0CL80 117 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 GAGE12GP0CL81 117 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 GAGE12IP0CL82 117 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 GAGE4Q13068 117 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 DGAT2L7PQ6IED9 249 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 Q6ZSN1 163 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 TMEM101Q96IK0 257 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 ZNF702PQ9H963 129 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 CDKN2A-AS1Q9UH64 79 aa11.79□□□□□ -0.52
SHMT2-232ENST00000557487 RBMY1BA6NDE4 496 aaKnown RBP11.78□□□□□ -0.52
SHMT2-232ENST00000557487 RBMY1EA6NEQ0 496 aaKnown RBP11.78□□□□□ -0.52
SHMT2-232ENST00000557487 INSP01308 110 aa11.78□□□□□ -0.52
SHMT2-232ENST00000557487 RBMY1DP0C7P1 496 aaKnown RBP11.78□□□□□ -0.52
SHMT2-232ENST00000557487 CSDC2Q9Y534 153 aaKnown RBP11.78□□□□□ -0.52
SHMT2-232ENST00000557487 CSMD2Q7Z408 3487 aa11.78□□□□□ -0.52
SHMT2-232ENST00000557487 MAST4O15021 2626 aa11.78□□□□□ -0.52
SHMT2-232ENST00000557487 ANKRD17O75179 2603 aaKnown RBP11.78□□□□□ -0.52
SHMT2-232ENST00000557487 AKAP6Q13023 2319 aa11.78□□□□□ -0.52
SHMT2-232ENST00000557487 Q6YL49 198 aa11.77□□□□□ -0.53
SHMT2-232ENST00000557487 LINC00308Q8TCZ7 52 aa11.77□□□□□ -0.53
SHMT2-232ENST00000557487 CLEC2BQ92478 149 aa11.77□□□□□ -0.53
SHMT2-232ENST00000557487 LINC01587Q99440 93 aa11.77□□□□□ -0.53
SHMT2-232ENST00000557487 TEX15Q9BXT5 2789 aa11.77□□□□□ -0.53
SHMT2-232ENST00000557487 A8MZ25 164 aa11.76□□□□□ -0.53
SHMT2-232ENST00000557487 COX7A2LO14548 114 aa11.76□□□□□ -0.53
SHMT2-232ENST00000557487 TRBV7-7A0A0K0K1E9 115 aa11.75□□□□□ -0.53
SHMT2-232ENST00000557487 HERV-K104P63124 156 aa11.75□□□□□ -0.53
SHMT2-232ENST00000557487 CITED2Q99967 270 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-232ENST00000557487 MAP6D1Q9H9H5 199 aa11.75□□□□□ -0.53
SHMT2-232ENST00000557487 TRBV10-1A0A0K0K1A3 114 aa11.74□□□□□ -0.53
SHMT2-232ENST00000557487 FSHBP01225 129 aa11.74□□□□□ -0.53
SHMT2-232ENST00000557487 NPC2P61916 151 aa11.74□□□□□ -0.53
SHMT2-232ENST00000557487 WFDC11Q8NEX6 87 aa11.74□□□□□ -0.53
SHMT2-232ENST00000557487 IMUPQ9GZP8 106 aa11.74□□□□□ -0.53
SHMT2-232ENST00000557487 Q9H8V8 135 aa11.74□□□□□ -0.53
SHMT2-232ENST00000557487 CREBBPQ92793 2442 aa11.73□□□□□ -0.53
SHMT2-232ENST00000557487 IGHV3OR16-12A0A075B7B8 117 aa11.73□□□□□ -0.53
SHMT2-232ENST00000557487 SLURP1P55000 103 aa11.73□□□□□ -0.53
SHMT2-232ENST00000557487 LINC00242Q5T6M2 205 aa11.73□□□□□ -0.53
SHMT2-232ENST00000557487 SHISA2Q6UWI4 295 aa11.73□□□□□ -0.53
SHMT2-232ENST00000557487 Q8N2B8 174 aa11.73□□□□□ -0.53
SHMT2-232ENST00000557487 Q9UF83 564 aa11.73□□□□□ -0.53
SHMT2-232ENST00000557487 CCDC168Q8NDH2 2452 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 TRACP01848 142 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 Q6ZSV7 163 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 C4orf3Q8WVX3 66 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 MYO9AB2RTY4 2548 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 NACAE9PAV3 2078 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 A0A096LNT2 108 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 IGHV3-38A0A0C4DH36 116 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 B5MCH6 92 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 DAZ2Q13117 558 aaKnown RBP11.72□□□□□ -0.53
SHMT2-232ENST00000557487 DAZ4Q86SG3 579 aaKnown RBP11.72□□□□□ -0.53
SHMT2-232ENST00000557487 DYNLRB2Q8TF09 96 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 DAZ3Q9NR90 486 aaKnown RBP11.72□□□□□ -0.53
SHMT2-232ENST00000557487 OTOGQ6ZRI0 2925 aa11.72□□□□□ -0.53
SHMT2-232ENST00000557487 AKAP9Q99996 3911 aa11.71□□□□□ -0.53
SHMT2-232ENST00000557487 SMIM1B2RUZ4 78 aa11.7□□□□□ -0.54
SHMT2-232ENST00000557487 PF4P02776 101 aa11.7□□□□□ -0.54
SHMT2-232ENST00000557487 RPL36AP83881 106 aaKnown RBP11.7□□□□□ -0.54
SHMT2-232ENST00000557487 COX6A2Q02221 97 aa11.7□□□□□ -0.54
SHMT2-232ENST00000557487 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-232ENST00000557487 IL17DQ8TAD2 202 aa11.7□□□□□ -0.54
SHMT2-232ENST00000557487 RPL36ALQ969Q0 106 aaKnown RBP11.7□□□□□ -0.54
SHMT2-232ENST00000557487 Q96MF0 132 aa11.7□□□□□ -0.54
SHMT2-232ENST00000557487 ZNF625Q96I27 306 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-232ENST00000557487 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.7□□□□□ -0.542e-7■■■■□ 25.4
SHMT2-232ENST00000557487 TRAV25A0A0B4J276 109 aa11.69□□□□□ -0.54
SHMT2-232ENST00000557487 DAND5Q8N907 189 aa11.69□□□□□ -0.54
SHMT2-232ENST00000557487 SS18L2Q9UHA2 77 aa11.69□□□□□ -0.54
SHMT2-232ENST00000557487 DEFB114Q30KQ6 69 aa11.68□□□□□ -0.54
SHMT2-232ENST00000557487 FAM222AQ5U5X8 452 aa11.68□□□□□ -0.54
SHMT2-232ENST00000557487 PRM2P04554 102 aa11.68□□□□□ -0.54
SHMT2-232ENST00000557487 K7EQD1 137 aa11.67□□□□□ -0.54
SHMT2-232ENST00000557487 MEIG1Q5JSS6 88 aa11.67□□□□□ -0.54
SHMT2-232ENST00000557487 PRIMA1Q86XR5 153 aa11.67□□□□□ -0.54
SHMT2-232ENST00000557487 CCDC179H3BU77 68 aa11.66□□□□□ -0.54
SHMT2-232ENST00000557487 OVOL2Q9BRP0 275 aa11.66□□□□□ -0.54
SHMT2-232ENST00000557487 DEFB136Q30KP8 78 aa11.66□□□□□ -0.54
SHMT2-232ENST00000557487 TRAV13-2A0A0B4J235 113 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms