RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	C4orf3	Q8WVX3	66 aa		11.72	□□□□□ -0.53
SHMT2-231	ENST00000557433	NACA	E9PAV3	2078 aa		11.72	□□□□□ -0.53
SHMT2-231	ENST00000557433		A0A096LNT2	108 aa		11.72	□□□□□ -0.53
SHMT2-231	ENST00000557433	IGHV3-38	A0A0C4DH36	116 aa		11.72	□□□□□ -0.53
SHMT2-231	ENST00000557433		B5MCH6	92 aa		11.72	□□□□□ -0.53
SHMT2-231	ENST00000557433	DAZ2	Q13117	558 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-231	ENST00000557433	DAZ4	Q86SG3	579 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-231	ENST00000557433	DYNLRB2	Q8TF09	96 aa		11.72	□□□□□ -0.53
SHMT2-231	ENST00000557433	DAZ3	Q9NR90	486 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-231	ENST00000557433	RELN	P78509	3460 aa		11.71	□□□□□ -0.54
SHMT2-231	ENST00000557433	SMIM1	B2RUZ4	78 aa		11.7	□□□□□ -0.54
SHMT2-231	ENST00000557433	PF4	P02776	101 aa		11.7	□□□□□ -0.54
SHMT2-231	ENST00000557433	RPL36A	P83881	106 aa	Known RBP	11.7	□□□□□ -0.54
SHMT2-231	ENST00000557433	COX6A2	Q02221	97 aa		11.7	□□□□□ -0.54
SHMT2-231	ENST00000557433	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-231	ENST00000557433	IL17D	Q8TAD2	202 aa		11.7	□□□□□ -0.54
SHMT2-231	ENST00000557433	RPL36AL	Q969Q0	106 aa	Known RBP	11.7	□□□□□ -0.54
SHMT2-231	ENST00000557433	ZNF625	Q96I27	306 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-231	ENST00000557433	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	11.7	□□□□□ -0.54	2e-7	■■■■□ 25.4
SHMT2-231	ENST00000557433	TRAV25	A0A0B4J276	109 aa		11.69	□□□□□ -0.54
SHMT2-231	ENST00000557433	DAND5	Q8N907	189 aa		11.69	□□□□□ -0.54
SHMT2-231	ENST00000557433	SS18L2	Q9UHA2	77 aa		11.69	□□□□□ -0.54
SHMT2-231	ENST00000557433	DEFB114	Q30KQ6	69 aa		11.68	□□□□□ -0.54
SHMT2-231	ENST00000557433	FAM222A	Q5U5X8	452 aa		11.68	□□□□□ -0.54
SHMT2-231	ENST00000557433	PRM2	P04554	102 aa		11.68	□□□□□ -0.54
SHMT2-231	ENST00000557433		K7EQD1	137 aa		11.67	□□□□□ -0.54
SHMT2-231	ENST00000557433	MEIG1	Q5JSS6	88 aa		11.67	□□□□□ -0.54
SHMT2-231	ENST00000557433	PRIMA1	Q86XR5	153 aa		11.67	□□□□□ -0.54
SHMT2-231	ENST00000557433	CCDC179	H3BU77	68 aa		11.66	□□□□□ -0.54
SHMT2-231	ENST00000557433	OVOL2	Q9BRP0	275 aa		11.66	□□□□□ -0.54
SHMT2-231	ENST00000557433	DEFB136	Q30KP8	78 aa		11.66	□□□□□ -0.54
SHMT2-231	ENST00000557433	TRAV13-2	A0A0B4J235	113 aa		11.65	□□□□□ -0.54
SHMT2-231	ENST00000557433		F5H768	121 aa		11.65	□□□□□ -0.54
SHMT2-231	ENST00000557433	LINC00643	Q86TS7	51 aa		11.65	□□□□□ -0.54
SHMT2-231	ENST00000557433	CDC42SE2	Q9NRR3	84 aa		11.65	□□□□□ -0.54
SHMT2-231	ENST00000557433	INAFM2	P0DMQ5	153 aa		11.64	□□□□□ -0.55
SHMT2-231	ENST00000557433	SOSTDC1	Q6X4U4	206 aa		11.64	□□□□□ -0.55
SHMT2-231	ENST00000557433	C18orf65	Q6ZTR6	163 aa		11.64	□□□□□ -0.55
SHMT2-231	ENST00000557433	ASH1L	Q9NR48	2969 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-231	ENST00000557433	TRGV1	A0A0A0MS02	117 aa		11.63	□□□□□ -0.55
SHMT2-231	ENST00000557433	ATP5G1	P05496	136 aa		11.63	□□□□□ -0.55
SHMT2-231	ENST00000557433	HIST2H2BC	Q6DN03	193 aa		11.63	□□□□□ -0.55
SHMT2-231	ENST00000557433	HIST2H2BD	Q6DRA6	164 aa		11.63	□□□□□ -0.55
SHMT2-231	ENST00000557433	SDIM1	Q6ZPB5	146 aa		11.63	□□□□□ -0.55
SHMT2-231	ENST00000557433	STH	Q8IWL8	128 aa		11.63	□□□□□ -0.55
SHMT2-231	ENST00000557433	TRAV13-1	A0A0B4J241	112 aa		11.62	□□□□□ -0.55
SHMT2-231	ENST00000557433	LINC00694	P0DN24	101 aa		11.62	□□□□□ -0.55
SHMT2-231	ENST00000557433	C1orf158	Q8N1D5	194 aa		11.62	□□□□□ -0.55
SHMT2-231	ENST00000557433	BAALC-AS2	P0C853	105 aa		11.62	□□□□□ -0.55
SHMT2-231	ENST00000557433	RPL28	P46779	137 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-231	ENST00000557433	SVEP1	Q4LDE5	3571 aa		11.61	□□□□□ -0.55
SHMT2-231	ENST00000557433	IGHV4-31	P0DP07	118 aa		11.61	□□□□□ -0.55
SHMT2-231	ENST00000557433	NTM-AS1	Q6ZSK4	140 aa		11.61	□□□□□ -0.55
SHMT2-231	ENST00000557433	TMEM243	Q9BU79	118 aa		11.61	□□□□□ -0.55
SHMT2-231	ENST00000557433	XCL2	Q9UBD3	114 aa		11.61	□□□□□ -0.55
SHMT2-231	ENST00000557433	UBE2L6	O14933	153 aa		11.6	□□□□□ -0.55
SHMT2-231	ENST00000557433	CMC4	P56277	68 aa	Predicted RBP	11.6	□□□□□ -0.55
SHMT2-231	ENST00000557433	ODF3L2	Q3SX64	289 aa		11.6	□□□□□ -0.55
SHMT2-231	ENST00000557433	SORL1	Q92673	2214 aa		11.6	□□□□□ -0.55
SHMT2-231	ENST00000557433	CXCL5	P42830	114 aa		11.6	□□□□□ -0.55
SHMT2-231	ENST00000557433	TMEM126A	Q9H061	195 aa		11.6	□□□□□ -0.55
SHMT2-231	ENST00000557433	ACACB	O00763	2458 aa		11.59	□□□□□ -0.55
SHMT2-231	ENST00000557433	CHD8	Q9HCK8	2581 aa		11.59	□□□□□ -0.55
SHMT2-231	ENST00000557433	CRP	P02741	224 aa		11.58	□□□□□ -0.55
SHMT2-231	ENST00000557433	TMEM86B	Q8N661	226 aa		11.58	□□□□□ -0.55
SHMT2-231	ENST00000557433	CSPG4	Q6UVK1	2322 aa		11.58	□□□□□ -0.56
SHMT2-231	ENST00000557433		A0A0U1RRA0	63 aa		11.58	□□□□□ -0.56
SHMT2-231	ENST00000557433	KHDC1L	Q5JSQ8	128 aa		11.58	□□□□□ -0.56
SHMT2-231	ENST00000557433	NRGN	Q92686	78 aa		11.57	□□□□□ -0.56
SHMT2-231	ENST00000557433	COX7B2	Q8TF08	81 aa		11.56	□□□□□ -0.56
SHMT2-231	ENST00000557433		H0YGX0	51 aa		11.56	□□□□□ -0.56
SHMT2-231	ENST00000557433	NDUFA7	O95182	113 aa		11.56	□□□□□ -0.56
SHMT2-231	ENST00000557433		Q6ZTI0	123 aa		11.56	□□□□□ -0.56
SHMT2-231	ENST00000557433	MAL	P21145	153 aa		11.55	□□□□□ -0.56
SHMT2-231	ENST00000557433	CHCHD5	Q9BSY4	110 aa		11.55	□□□□□ -0.56
SHMT2-231	ENST00000557433	FAM236A	A0A1B0GUQ0	79 aa		11.54	□□□□□ -0.56
SHMT2-231	ENST00000557433	FAM236B	A0A1B0GV22	79 aa		11.54	□□□□□ -0.56
SHMT2-231	ENST00000557433	TRBV6-4	A0A1B0GX49	114 aa		11.54	□□□□□ -0.56
SHMT2-231	ENST00000557433	FAM110A	Q9BQ89	295 aa		11.54	□□□□□ -0.56
SHMT2-231	ENST00000557433	C16orf74	Q96GX8	76 aa		11.54	□□□□□ -0.56
SHMT2-231	ENST00000557433	MAPK1IP1L	Q8NDC0	245 aa		11.53	□□□□□ -0.56
SHMT2-231	ENST00000557433	SMCR5	Q8TEV8	140 aa		11.53	□□□□□ -0.56
SHMT2-231	ENST00000557433		Q96MF0	132 aa		11.53	□□□□□ -0.56
SHMT2-231	ENST00000557433	FAM218A	Q96MZ4	157 aa		11.53	□□□□□ -0.56
SHMT2-231	ENST00000557433	SND1-IT1	Q9HBX3	110 aa		11.53	□□□□□ -0.56
SHMT2-231	ENST00000557433	C22orf24	Q9Y442	160 aa		11.53	□□□□□ -0.56
SHMT2-231	ENST00000557433	IBA57-AS1	B1ANH7	110 aa		11.52	□□□□□ -0.56
SHMT2-231	ENST00000557433	C5orf38	Q86SI9	138 aa		11.52	□□□□□ -0.56
SHMT2-231	ENST00000557433	DNAL4	O96015	105 aa		11.52	□□□□□ -0.57
SHMT2-231	ENST00000557433	MIR7-3HG	Q8N6C7	128 aa		11.52	□□□□□ -0.57
SHMT2-231	ENST00000557433	ZFHX3	Q15911	3703 aa		11.51	□□□□□ -0.57
SHMT2-231	ENST00000557433	LRRC75A-AS1	Q8N1F1	130 aa		11.51	□□□□□ -0.57
SHMT2-231	ENST00000557433	CREBBP	Q92793	2442 aa		11.51	□□□□□ -0.57
SHMT2-231	ENST00000557433	EPG5	Q9HCE0	2579 aa		11.5	□□□□□ -0.57
SHMT2-231	ENST00000557433	DOPEY1	Q5JWR5	2465 aa		11.5	□□□□□ -0.57
SHMT2-231	ENST00000557433	UQCRQ	O14949	82 aa		11.5	□□□□□ -0.57
SHMT2-231	ENST00000557433	LINC00337	Q8N6G1	96 aa		11.5	□□□□□ -0.57
SHMT2-231	ENST00000557433	NOP10	Q9NPE3	64 aa	Known RBP	11.5	□□□□□ -0.57
SHMT2-231	ENST00000557433	IGKV2-28	A0A075B6P5	120 aa		11.49	□□□□□ -0.57
SHMT2-231	ENST00000557433	IGKV2D-28	P01615	120 aa		11.49	□□□□□ -0.57

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