RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 DNAJC30Q96LL9 226 aa6.15□□□□□ -1.42
SYNE2-224ENST00000557024 PRELID3AQ96N28 172 aa6.15□□□□□ -1.42
SYNE2-224ENST00000557024 NIT2Q9NQR4 276 aa6.15□□□□□ -1.42
SYNE2-224ENST00000557024 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.14□□□□□ -1.43
SYNE2-224ENST00000557024 IBA57-AS1B1ANH7 110 aa6.14□□□□□ -1.43
SYNE2-224ENST00000557024 M0QY20 66 aa6.14□□□□□ -1.43
SYNE2-224ENST00000557024 LECT2O14960 151 aa6.14□□□□□ -1.43
SYNE2-224ENST00000557024 TRGC2P03986 189 aa6.14□□□□□ -1.43
SYNE2-224ENST00000557024 NEXN-AS1Q8NBZ9 246 aa6.14□□□□□ -1.43
SYNE2-224ENST00000557024 ST20Q9HBF5 79 aa6.14□□□□□ -1.43
SYNE2-224ENST00000557024 LAMTOR2Q9Y2Q5 125 aa6.14□□□□□ -1.43
SYNE2-224ENST00000557024 DNAH8Q96JB1 4490 aa6.14□□□□□ -1.43
SYNE2-224ENST00000557024 TRBV7-3A0A075B6L6 115 aa6.13□□□□□ -1.43
SYNE2-224ENST00000557024 IGHV3-38A0A0C4DH36 116 aa6.13□□□□□ -1.43
SYNE2-224ENST00000557024 C1orf196B1AJZ1 125 aa6.13□□□□□ -1.43
SYNE2-224ENST00000557024 PHOX2AO14813 284 aa6.13□□□□□ -1.43
SYNE2-224ENST00000557024 TNFRSF6BO95407 300 aa6.13□□□□□ -1.43
SYNE2-224ENST00000557024 PMCHP20382 165 aa6.13□□□□□ -1.43
SYNE2-224ENST00000557024 SH2D6Q7Z4S9 175 aa6.13□□□□□ -1.43
SYNE2-224ENST00000557024 RPL39LQ96EH5 51 aaKnown RBP6.13□□□□□ -1.43
SYNE2-224ENST00000557024 CHAC1Q9BUX1 264 aa6.13□□□□□ -1.43
SYNE2-224ENST00000557024 MAP1LC3AQ9H492 121 aa6.13□□□□□ -1.43
SYNE2-224ENST00000557024 LOC100131303A0A0U1RQF7 123 aa6.12□□□□□ -1.43
SYNE2-224ENST00000557024 LOC389332A0A1B0GUA5 103 aa6.12□□□□□ -1.43
SYNE2-224ENST00000557024 NPYP01303 97 aa6.12□□□□□ -1.43
SYNE2-224ENST00000557024 MT1HL1P0DM35 61 aa6.12□□□□□ -1.43
SYNE2-224ENST00000557024 HNRNPA3P51991 378 aaKnown RBP6.12□□□□□ -1.43
SYNE2-224ENST00000557024 LINC01556Q5JQF7 62 aa6.12□□□□□ -1.43
SYNE2-224ENST00000557024 ATP6V0E2Q8NHE4 81 aa6.12□□□□□ -1.43
SYNE2-224ENST00000557024 CIRBP-AS1Q8TBR5 109 aa6.12□□□□□ -1.43
SYNE2-224ENST00000557024 SDHAF1A6NFY7 115 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 GAS8-AS1O95177 125 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 IGHV3-30P01768 117 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 IGHV3-33P01772 117 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 IGHV3-30-3P0DP02 117 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 IGHV3-30-5P0DP03 117 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 SUMO2P61956 95 aaKnown RBP6.11□□□□□ -1.43
SYNE2-224ENST00000557024 LCE4AQ5TA78 99 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 DAZ4Q86SG3 579 aaKnown RBP6.11□□□□□ -1.43
SYNE2-224ENST00000557024 PRSS3P2Q8NHM4 247 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 C20orf78Q9BR46 151 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 ALKBH7Q9BT30 221 aaPredicted RBP6.11□□□□□ -1.43
SYNE2-224ENST00000557024 KRTAP4-9Q9BYQ8 210 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 DAZ3Q9NR90 486 aaKnown RBP6.11□□□□□ -1.43
SYNE2-224ENST00000557024 LRP2P98164 4655 aa6.11□□□□□ -1.43
SYNE2-224ENST00000557024 TRBV6-5A0A0K0K1A5 114 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 I3L3M4 83 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 VCYO14598 125 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 FCER1GP30273 86 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 UBE2D3P61077 147 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 RPL37AP61513 92 aaKnown RBP6.1□□□□□ -1.43
SYNE2-224ENST00000557024 UBE2D2P62837 147 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 COTL1Q14019 142 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 TMEM97Q5BJF2 176 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 FA2HQ7L5A8 372 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 NRACQ8N912 160 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 KIR2DL4Q99706 377 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 SMIM2Q9BVW6 85 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 TM2D2Q9BX73 214 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 NXT2Q9NPJ8 142 aaKnown RBP6.1□□□□□ -1.43
SYNE2-224ENST00000557024 PKHD1L1Q86WI1 4243 aa6.1□□□□□ -1.43
SYNE2-224ENST00000557024 KRTAP23-1A1A580 65 aa6.09□□□□□ -1.43
SYNE2-224ENST00000557024 TCAPO15273 167 aa6.09□□□□□ -1.43
SYNE2-224ENST00000557024 RAB5BP61020 215 aa6.09□□□□□ -1.43
SYNE2-224ENST00000557024 BAGE3Q86Y29 109 aa6.09□□□□□ -1.43
SYNE2-224ENST00000557024 GTSF1LQ9H1H1 148 aa6.09□□□□□ -1.43
SYNE2-224ENST00000557024 Q9UF83 564 aa6.09□□□□□ -1.43
SYNE2-224ENST00000557024 TRAV8-6A0A0B4J262 113 aa6.08□□□□□ -1.44
SYNE2-224ENST00000557024 POLR2KP53803 58 aaKnown RBP6.08□□□□□ -1.44
SYNE2-224ENST00000557024 TIRAPP58753 221 aa6.08□□□□□ -1.44
SYNE2-224ENST00000557024 RPL32P62910 135 aaKnown RBP6.08□□□□□ -1.44
SYNE2-224ENST00000557024 IQCJQ1A5X6 159 aa6.08□□□□□ -1.44
SYNE2-224ENST00000557024 Q8N8P6 123 aa6.08□□□□□ -1.44
SYNE2-224ENST00000557024 C18orf32Q8TCD1 76 aa6.08□□□□□ -1.44
SYNE2-224ENST00000557024 BAALCQ8WXS3 180 aa6.08□□□□□ -1.44
SYNE2-224ENST00000557024 TRBV25-1A0A075B6N4 114 aa6.07□□□□□ -1.44
SYNE2-224ENST00000557024 PRSS47A8MTI9 375 aa6.07□□□□□ -1.44
SYNE2-224ENST00000557024 UBE2L6O14933 153 aa6.07□□□□□ -1.44
SYNE2-224ENST00000557024 IFI27P40305 119 aaPredicted RBP6.07□□□□□ -1.44
SYNE2-224ENST00000557024 AMTP48728 403 aa6.07□□□□□ -1.44
SYNE2-224ENST00000557024 RNASEKQ6P5S7 137 aaKnown RBP6.07□□□□□ -1.44
SYNE2-224ENST00000557024 TMEM18Q96B42 140 aa6.07□□□□□ -1.44
SYNE2-224ENST00000557024 IGHV1-24A0A0C4DH33 117 aa6.06□□□□□ -1.44
SYNE2-224ENST00000557024 TRBV27A0A0K0K1C4 114 aa6.06□□□□□ -1.44
SYNE2-224ENST00000557024 LINC00614P0C842 121 aa6.06□□□□□ -1.44
SYNE2-224ENST00000557024 LINC00694P0DN24 101 aa6.06□□□□□ -1.44
SYNE2-224ENST00000557024 G0S2P27469 103 aa6.06□□□□□ -1.44
SYNE2-224ENST00000557024 NDUFA6P56556 154 aa6.06□□□□□ -1.44
SYNE2-224ENST00000557024 LAGE3Q14657 143 aa6.06□□□□□ -1.44
SYNE2-224ENST00000557024 ORMDL2Q53FV1 153 aa6.06□□□□□ -1.44
SYNE2-224ENST00000557024 NIT1Q86X76 327 aa6.06□□□□□ -1.44
SYNE2-224ENST00000557024 TRBV6-8A0A0A6YYG3 113 aa6.05□□□□□ -1.44
SYNE2-224ENST00000557024 K7EMI3 77 aa6.05□□□□□ -1.44
SYNE2-224ENST00000557024 TRIAP1O43715 76 aa6.05□□□□□ -1.44
SYNE2-224ENST00000557024 HIST1H2BKO60814 126 aa6.05□□□□□ -1.44
SYNE2-224ENST00000557024 HSBP1O75506 76 aa6.05□□□□□ -1.44
SYNE2-224ENST00000557024 S100A6P06703 90 aa6.05□□□□□ -1.44
SYNE2-224ENST00000557024 HIST1H2BJP06899 126 aa6.05□□□□□ -1.44
SYNE2-224ENST00000557024 HIST1H2BOP23527 126 aa6.05□□□□□ -1.44
SYNE2-224ENST00000557024 HIST1H2BBP33778 126 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms