RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SPATA12Q7Z6I5 190 aa11.6□□□□□ -0.55
SHMT2-225ENST00000556798 MRPL52Q86TS9 123 aaKnown RBP11.6□□□□□ -0.55
SHMT2-225ENST00000556798 ALKBH7Q9BT30 221 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-225ENST00000556798 UBE2D4Q9Y2X8 147 aa11.6□□□□□ -0.55
SHMT2-225ENST00000556798 COX11Q9Y6N1 276 aa11.6□□□□□ -0.55
SHMT2-225ENST00000556798 EREGO14944 169 aa11.59□□□□□ -0.55
SHMT2-225ENST00000556798 IFI27P40305 119 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-225ENST00000556798 KRTAP10-2P60368 255 aa11.59□□□□□ -0.55
SHMT2-225ENST00000556798 BAALCQ8WXS3 180 aa11.59□□□□□ -0.55
SHMT2-225ENST00000556798 DYNC1H1Q14204 4646 aaKnown RBP11.59□□□□□ -0.55
SHMT2-225ENST00000556798 DGAT2L7PQ6IED9 249 aa11.58□□□□□ -0.56
SHMT2-225ENST00000556798 TMEM18Q96B42 140 aa11.58□□□□□ -0.56
SHMT2-225ENST00000556798 RNASE13Q5GAN3 156 aaKnown RBP11.57□□□□□ -0.56
SHMT2-225ENST00000556798 KRTAP26-1Q6PEX3 210 aa11.57□□□□□ -0.56
SHMT2-225ENST00000556798 CDC42SE2Q9NRR3 84 aa11.57□□□□□ -0.56
SHMT2-225ENST00000556798 Q6ZUT4 128 aa11.56□□□□□ -0.56
SHMT2-225ENST00000556798 ZNF664Q8N3J9 261 aa11.56□□□□□ -0.56
SHMT2-225ENST00000556798 NXT2Q9NPJ8 142 aaKnown RBP11.56□□□□□ -0.56
SHMT2-225ENST00000556798 BIRC6Q9NR09 4857 aa11.56□□□□□ -0.56
SHMT2-225ENST00000556798 DNAH5Q8TE73 4624 aa11.56□□□□□ -0.56
SHMT2-225ENST00000556798 TRAV8-4A0A0B4J246 113 aa11.55□□□□□ -0.56
SHMT2-225ENST00000556798 SMAGPQ0VAQ4 97 aa11.55□□□□□ -0.56
SHMT2-225ENST00000556798 Q8N814 137 aa11.55□□□□□ -0.56
SHMT2-225ENST00000556798 TIMM21Q9BVV7 248 aa11.55□□□□□ -0.56
SHMT2-225ENST00000556798 PRSS3P2Q8NHM4 247 aa11.54□□□□□ -0.56
SHMT2-225ENST00000556798 OPRPNQ99935 248 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-225ENST00000556798 CSDC2Q9Y534 153 aaKnown RBP11.54□□□□□ -0.56
SHMT2-225ENST00000556798 C16orf90A8MZG2 172 aa11.53□□□□□ -0.56
SHMT2-225ENST00000556798 ORMDL2Q53FV1 153 aa11.53□□□□□ -0.56
SHMT2-225ENST00000556798 SPANXA1Q9NS26 97 aa11.53□□□□□ -0.56
SHMT2-225ENST00000556798 GAGE12HA6NDE8 117 aa11.52□□□□□ -0.57
SHMT2-225ENST00000556798 SCO1O75880 301 aa11.52□□□□□ -0.57
SHMT2-225ENST00000556798 CHCHD10Q8WYQ3 142 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-225ENST00000556798 FAM104AQ969W3 186 aa11.52□□□□□ -0.57
SHMT2-225ENST00000556798 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-225ENST00000556798 LINC00959A0A1B0GUT2 108 aa11.51□□□□□ -0.57
SHMT2-225ENST00000556798 K7EMI3 77 aa11.51□□□□□ -0.57
SHMT2-225ENST00000556798 C2orf66Q6UXQ4 117 aa11.51□□□□□ -0.57
SHMT2-225ENST00000556798 C18orf32Q8TCD1 76 aa11.51□□□□□ -0.57
SHMT2-225ENST00000556798 CYSLTR1Q9Y271 337 aa11.51□□□□□ -0.57
SHMT2-225ENST00000556798 USP17L23D6RBM5 183 aa11.5□□□□□ -0.57
SHMT2-225ENST00000556798 XCL1P47992 114 aa11.5□□□□□ -0.57
SHMT2-225ENST00000556798 CCL25O15444 150 aa11.49□□□□□ -0.57
SHMT2-225ENST00000556798 SS18Q15532 418 aa11.49□□□□□ -0.57
SHMT2-225ENST00000556798 FA2HQ7L5A8 372 aa11.49□□□□□ -0.57
SHMT2-225ENST00000556798 LRP1BQ9NZR2 4599 aa11.48□□□□□ -0.57
SHMT2-225ENST00000556798 IGLV4-3A0A075B6K6 122 aa11.48□□□□□ -0.57
SHMT2-225ENST00000556798 IGLV5-52A0A0A0MRZ9 124 aa11.48□□□□□ -0.57
SHMT2-225ENST00000556798 TRAV13-1A0A0B4J241 112 aa11.48□□□□□ -0.57
SHMT2-225ENST00000556798 LINC01546A6NGU7 62 aa11.48□□□□□ -0.57
SHMT2-225ENST00000556798 MRPS36P82909 103 aaKnown RBP11.48□□□□□ -0.57
SHMT2-225ENST00000556798 PGPEP1Q9NXJ5 209 aa11.48□□□□□ -0.57
SHMT2-225ENST00000556798 PYGO1Q9Y3Y4 419 aa11.48□□□□□ -0.57
SHMT2-225ENST00000556798 COLCA2A8K830 154 aa11.47□□□□□ -0.57
SHMT2-225ENST00000556798 FOXI1Q12951 378 aa11.47□□□□□ -0.57
SHMT2-225ENST00000556798 CDPF1Q6NVV7 123 aa11.47□□□□□ -0.57
SHMT2-225ENST00000556798 URB1-AS1Q96HZ7 61 aa11.47□□□□□ -0.57
SHMT2-225ENST00000556798 TRGC2P03986 189 aa11.46□□□□□ -0.57
SHMT2-225ENST00000556798 NTN5Q8WTR8 489 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-225ENST00000556798 IFITM10A6NMD0 228 aa11.45□□□□□ -0.58
SHMT2-225ENST00000556798 C14orf177Q52M58 125 aa11.45□□□□□ -0.58
SHMT2-225ENST00000556798 ZC2HC1BQ5TFG8 222 aa11.45□□□□□ -0.58
SHMT2-225ENST00000556798 TOMM6Q96B49 74 aa11.45□□□□□ -0.58
SHMT2-225ENST00000556798 TMEM141Q96I45 108 aa11.45□□□□□ -0.58
SHMT2-225ENST00000556798 IGIPA6NJ69 53 aa11.44□□□□□ -0.58
SHMT2-225ENST00000556798 C1orf196B1AJZ1 125 aa11.44□□□□□ -0.58
SHMT2-225ENST00000556798 PRSS1P07477 247 aa11.44□□□□□ -0.58
SHMT2-225ENST00000556798 G0S2P27469 103 aa11.44□□□□□ -0.58
SHMT2-225ENST00000556798 AP5S1Q9NUS5 200 aa11.44□□□□□ -0.58
SHMT2-225ENST00000556798 CD164L2Q6UWJ8 174 aa11.43□□□□□ -0.58
SHMT2-225ENST00000556798 C15orf56Q8N910 161 aa11.43□□□□□ -0.58
SHMT2-225ENST00000556798 hDV102S1A0JD36 115 aa11.42□□□□□ -0.58
SHMT2-225ENST00000556798 ATP6V1G1O75348 118 aa11.42□□□□□ -0.58
SHMT2-225ENST00000556798 LINC00614P0C842 121 aa11.42□□□□□ -0.58
SHMT2-225ENST00000556798 KRTAP10-1P60331 282 aa11.42□□□□□ -0.58
SHMT2-225ENST00000556798 PMCHL1Q16048 86 aa11.42□□□□□ -0.58
SHMT2-225ENST00000556798 Q6ZN92 141 aa11.42□□□□□ -0.58
SHMT2-225ENST00000556798 TEX43Q6ZNM6 134 aa11.42□□□□□ -0.58
SHMT2-225ENST00000556798 LINC00173Q6ZV60 143 aa11.42□□□□□ -0.58
SHMT2-225ENST00000556798 SCGB3A1Q96QR1 104 aa11.42□□□□□ -0.58
SHMT2-225ENST00000556798 KIAA1109Q2LD37 5005 aa11.41□□□□□ -0.58
SHMT2-225ENST00000556798 A0A096LNJ9 63 aa11.41□□□□□ -0.58
SHMT2-225ENST00000556798 GCSHP23434 173 aa11.41□□□□□ -0.58
SHMT2-225ENST00000556798 LINC01620Q4KN68 170 aa11.41□□□□□ -0.58
SHMT2-225ENST00000556798 HIGD2BQ4VC39 106 aa11.41□□□□□ -0.58
SHMT2-225ENST00000556798 TIMM17AQ99595 171 aa11.41□□□□□ -0.58
SHMT2-225ENST00000556798 RAB5BP61020 215 aa11.4□□□□□ -0.58
SHMT2-225ENST00000556798 AMELXQ99217 191 aa11.4□□□□□ -0.58
SHMT2-225ENST00000556798 C2orf88Q9BSF0 95 aa11.4□□□□□ -0.58
SHMT2-225ENST00000556798 VCX2Q9H322 139 aa11.4□□□□□ -0.58
SHMT2-225ENST00000556798 NPSP0C0P6 89 aa11.39□□□□□ -0.59
SHMT2-225ENST00000556798 CFAP161Q6P656 301 aa11.39□□□□□ -0.59
SHMT2-225ENST00000556798 ERASQ7Z444 233 aa11.39□□□□□ -0.59
SHMT2-225ENST00000556798 C5orf38Q86SI9 138 aa11.39□□□□□ -0.59
SHMT2-225ENST00000556798 APOBP04114 4563 aaKnown RBP11.38□□□□□ -0.59
SHMT2-225ENST00000556798 COX7A2LO14548 114 aa11.38□□□□□ -0.59
SHMT2-225ENST00000556798 UBE2D1P51668 147 aa11.38□□□□□ -0.59
SHMT2-225ENST00000556798 HBDP02042 147 aa11.37□□□□□ -0.59
SHMT2-225ENST00000556798 LINC00242Q5T6M2 205 aa11.37□□□□□ -0.59
SHMT2-225ENST00000556798 GVQW2A0A096LPI5 108 aaPredicted RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms