RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 C9orf85Q96MD7 179 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 ATXN8Q156A1 80 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 TTC32Q5I0X7 151 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 Q6YL49 198 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 C1QTNF4Q9BXJ3 329 aa8.91□□□□□ -0.98
CCDC88C-211ENST00000556726 TRBV7-9A0A0J9YWB2 115 aa8.9□□□□□ -0.98
CCDC88C-211ENST00000556726 NFE4Q86UQ8 179 aa8.9□□□□□ -0.98
CCDC88C-211ENST00000556726 IGHV3-30P01768 117 aa8.9□□□□□ -0.99
CCDC88C-211ENST00000556726 MT-ATP8P03928 68 aa8.9□□□□□ -0.99
CCDC88C-211ENST00000556726 IGHV3-30-5P0DP03 117 aa8.9□□□□□ -0.99
CCDC88C-211ENST00000556726 C5orf38Q86SI9 138 aa8.9□□□□□ -0.99
CCDC88C-211ENST00000556726 TRBV20-1A0A075B6N2 111 aa8.89□□□□□ -0.99
CCDC88C-211ENST00000556726 TMEM223A0PJW6 202 aa8.89□□□□□ -0.99
CCDC88C-211ENST00000556726 RS1O15537 224 aa8.89□□□□□ -0.99
CCDC88C-211ENST00000556726 TEX29Q8N6K0 151 aa8.89□□□□□ -0.99
CCDC88C-211ENST00000556726 TRAV8-4A0A0B4J246 113 aa8.88□□□□□ -0.99
CCDC88C-211ENST00000556726 CFAP126Q5VTH2 177 aa8.88□□□□□ -0.99
CCDC88C-211ENST00000556726 ANAPC13Q9BS18 74 aa8.88□□□□□ -0.99
CCDC88C-211ENST00000556726 NXPH4O95158 308 aa8.88□□□□□ -0.99
CCDC88C-211ENST00000556726 DEFB114Q30KQ6 69 aa8.88□□□□□ -0.99
CCDC88C-211ENST00000556726 LOC100131303A0A0U1RQF7 123 aa8.88□□□□□ -0.99
CCDC88C-211ENST00000556726 TEN1Q86WV5 123 aa8.88□□□□□ -0.99
CCDC88C-211ENST00000556726 RBMY1BA6NDE4 496 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-211ENST00000556726 RBMY1EA6NEQ0 496 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-211ENST00000556726 PAX4O43316 350 aa8.87□□□□□ -0.99
CCDC88C-211ENST00000556726 RBMY1DP0C7P1 496 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-211ENST00000556726 TEX49A0A1B0GTD5 131 aa8.87□□□□□ -0.99
CCDC88C-211ENST00000556726 DNAJC9-AS1A6NH13 148 aa8.87□□□□□ -0.99
CCDC88C-211ENST00000556726 CARD19Q96LW7 228 aa8.87□□□□□ -0.99
CCDC88C-211ENST00000556726 ITPR2Q14571 2701 aa8.87□□□□□ -0.99
CCDC88C-211ENST00000556726 CRLF1O75462 422 aa8.86□□□□□ -0.99
CCDC88C-211ENST00000556726 GAGE2BQ13066 116 aa8.86□□□□□ -0.99
CCDC88C-211ENST00000556726 GAGE2EQ4V326 116 aa8.86□□□□□ -0.99
CCDC88C-211ENST00000556726 GAGE2DQ9UEU5 116 aa8.86□□□□□ -0.99
CCDC88C-211ENST00000556726 IGHV1-58A0A0C4DH39 117 aa8.86□□□□□ -0.99
CCDC88C-211ENST00000556726 PRSS47A8MTI9 375 aa8.86□□□□□ -0.99
CCDC88C-211ENST00000556726 DNAL4O96015 105 aa8.86□□□□□ -0.99
CCDC88C-211ENST00000556726 LINC01620Q4KN68 170 aa8.86□□□□□ -0.99
CCDC88C-211ENST00000556726 UBR5O95071 2799 aaPredicted RBP8.85□□□□□ -0.99
CCDC88C-211ENST00000556726 IGHV3-33P01772 117 aa8.85□□□□□ -0.99
CCDC88C-211ENST00000556726 TRBV6-5A0A0K0K1A5 114 aa8.85□□□□□ -0.99
CCDC88C-211ENST00000556726 ADAMTSL4-AS1Q5T5F5 129 aa8.85□□□□□ -0.99
CCDC88C-211ENST00000556726 IGLV10-54A0A075B6I4 117 aa8.85□□□□□ -0.99
CCDC88C-211ENST00000556726 TRIAP1O43715 76 aa8.85□□□□□ -0.99
CCDC88C-211ENST00000556726 XCL1P47992 114 aa8.85□□□□□ -0.99
CCDC88C-211ENST00000556726 UBE2WQ96B02 151 aa8.85□□□□□ -0.99
CCDC88C-211ENST00000556726 TMEM243Q9BU79 118 aa8.85□□□□□ -0.99
CCDC88C-211ENST00000556726 C6orf226Q5I0X4 101 aa8.84□□□□□ -0.99
CCDC88C-211ENST00000556726 POM121L12Q8N7R1 296 aa8.84□□□□□ -0.99
CCDC88C-211ENST00000556726 FAM19A4Q96LR4 140 aa8.84□□□□□ -0.99
CCDC88C-211ENST00000556726 ICOSQ9Y6W8 199 aa8.84□□□□□ -0.99
CCDC88C-211ENST00000556726 UBE2D1P51668 147 aa8.84□□□□□ -0.99
CCDC88C-211ENST00000556726 ZFAND6Q6FIF0 208 aa8.84□□□□□ -0.99
CCDC88C-211ENST00000556726 VSIG2Q96IQ7 327 aa8.84□□□□□ -0.99
CCDC88C-211ENST00000556726 LINC01546A6NGU7 62 aa8.84□□□□□ -1
CCDC88C-211ENST00000556726 LINC00694P0DN24 101 aa8.84□□□□□ -1
CCDC88C-211ENST00000556726 PIK3CD-AS1Q5SR53 167 aa8.84□□□□□ -1
CCDC88C-211ENST00000556726 SPANXA1Q9NS26 97 aa8.84□□□□□ -1
CCDC88C-211ENST00000556726 SETXQ7Z333 2677 aaKnown RBP8.83□□□□□ -1
CCDC88C-211ENST00000556726 ODF3L2Q3SX64 289 aa8.83□□□□□ -1
CCDC88C-211ENST00000556726 TEP1Q99973 2627 aaKnown RBP8.83□□□□□ -1
CCDC88C-211ENST00000556726 ZNF843Q8N446 348 aa8.83□□□□□ -1
CCDC88C-211ENST00000556726 C3orf56Q8N813 242 aa8.83□□□□□ -1
CCDC88C-211ENST00000556726 SMR3AQ99954 134 aa8.83□□□□□ -1
CCDC88C-211ENST00000556726 TMEM89A2RUT3 159 aa8.82□□□□□ -1
CCDC88C-211ENST00000556726 C4orf3Q8WVX3 66 aa8.82□□□□□ -1
CCDC88C-211ENST00000556726 NIPBLQ6KC79 2804 aaeCLIP8.82□□□□□ -1
CCDC88C-211ENST00000556726 COX6A2Q02221 97 aa8.82□□□□□ -1
CCDC88C-211ENST00000556726 K7EQD1 137 aa8.81□□□□□ -1
CCDC88C-211ENST00000556726 SMCPP49901 116 aaPredicted RBP8.81□□□□□ -1
CCDC88C-211ENST00000556726 VPS13CQ709C8 3753 aa8.81□□□□□ -1
CCDC88C-211ENST00000556726 CRPP02741 224 aa8.81□□□□□ -1
CCDC88C-211ENST00000556726 XGP55808 180 aa8.81□□□□□ -1
CCDC88C-211ENST00000556726 ODF3Q96PU9 254 aa8.81□□□□□ -1
CCDC88C-211ENST00000556726 HERVK_113P63121 156 aa8.81□□□□□ -1
CCDC88C-211ENST00000556726 C15orf53Q8NAA6 179 aa8.81□□□□□ -1
CCDC88C-211ENST00000556726 UBE2D4Q9Y2X8 147 aa8.81□□□□□ -1
CCDC88C-211ENST00000556726 Q9HAA7 133 aa8.8□□□□□ -1
CCDC88C-211ENST00000556726 GAGE2AQ6NT46 116 aa8.79□□□□□ -1
CCDC88C-211ENST00000556726 MIAQ16674 131 aa8.78□□□□□ -1
CCDC88C-211ENST00000556726 LINC00482Q8N8I6 264 aa8.78□□□□□ -1
CCDC88C-211ENST00000556726 ZFHX3Q15911 3703 aa8.78□□□□□ -1
CCDC88C-211ENST00000556726 TRAV26-1A0A087WT03 109 aa8.78□□□□□ -1
CCDC88C-211ENST00000556726 TMEM263Q8WUH6 116 aaKnown RBP8.78□□□□□ -1
CCDC88C-211ENST00000556726 CHCHD7Q9BUK0 85 aa8.78□□□□□ -1
CCDC88C-211ENST00000556726 MALP21145 153 aa8.78□□□□□ -1
CCDC88C-211ENST00000556726 C1orf158Q8N1D5 194 aa8.78□□□□□ -1
CCDC88C-211ENST00000556726 MIR7-3HGQ8N6C7 128 aa8.78□□□□□ -1
CCDC88C-211ENST00000556726 RPL32P62910 135 aaKnown RBP8.77□□□□□ -1.01
CCDC88C-211ENST00000556726 TINCRA0A1B0GVN0 87 aa8.77□□□□□ -1.01
CCDC88C-211ENST00000556726 GYPEP15421 78 aa8.77□□□□□ -1.01
CCDC88C-211ENST00000556726 ATP5G1P05496 136 aa8.76□□□□□ -1.01
CCDC88C-211ENST00000556726 CRYBA4P53673 196 aa8.76□□□□□ -1.01
CCDC88C-211ENST00000556726 F8P00451 2351 aa8.76□□□□□ -1.01
CCDC88C-211ENST00000556726 PRO0461Q9UI25 63 aa8.76□□□□□ -1.01
CCDC88C-211ENST00000556726 B5MCH6 92 aa8.76□□□□□ -1.01
CCDC88C-211ENST00000556726 EIF4EBP3O60516 100 aaPredicted RBP8.76□□□□□ -1.01
CCDC88C-211ENST00000556726 UBE2D3P61077 147 aa8.76□□□□□ -1.01
CCDC88C-211ENST00000556726 UBE2D2P62837 147 aa8.76□□□□□ -1.01
CCDC88C-211ENST00000556726 APCP25054 2843 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms