RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 OR2D3Q8NGH3 330 aa5.67□□□□□ -1.5
SCFD1-215ENST00000555259 C2orf48Q96LS8 159 aa5.67□□□□□ -1.5
SCFD1-215ENST00000555259 KRTAP4-9Q9BYQ8 210 aa5.67□□□□□ -1.5
SCFD1-215ENST00000555259 PAGE4O60829 102 aa5.66□□□□□ -1.5
SCFD1-215ENST00000555259 LINC01547P58512 204 aaPredicted RBP5.66□□□□□ -1.5
SCFD1-215ENST00000555259 TPRXLQ17RH7 258 aa5.66□□□□□ -1.5
SCFD1-215ENST00000555259 AKR1C8PQ5T2L2 129 aa5.66□□□□□ -1.5
SCFD1-215ENST00000555259 FAM19A5Q7Z5A7 132 aaPredicted RBP5.66□□□□□ -1.5
SCFD1-215ENST00000555259 MARVELD1Q9BSK0 173 aa5.66□□□□□ -1.5
SCFD1-215ENST00000555259 C19orf71A6NCJ1 209 aa5.65□□□□□ -1.5
SCFD1-215ENST00000555259 F2Z2F3 143 aa5.65□□□□□ -1.5
SCFD1-215ENST00000555259 COX7A2LO14548 114 aa5.65□□□□□ -1.5
SCFD1-215ENST00000555259 ESDP10768 282 aa5.65□□□□□ -1.5
SCFD1-215ENST00000555259 RNF151Q2KHN1 245 aa5.65□□□□□ -1.5
SCFD1-215ENST00000555259 RPL39LQ96EH5 51 aaKnown RBP5.65□□□□□ -1.5
SCFD1-215ENST00000555259 RETNLBQ9BQ08 111 aa5.65□□□□□ -1.5
SCFD1-215ENST00000555259 KRTAP4-2Q9BYR5 136 aa5.65□□□□□ -1.5
SCFD1-215ENST00000555259 CDC42SE2Q9NRR3 84 aa5.65□□□□□ -1.5
SCFD1-215ENST00000555259 A0A087X002 238 aa5.64□□□□□ -1.51
SCFD1-215ENST00000555259 DEFA1P59665 94 aa5.64□□□□□ -1.51
SCFD1-215ENST00000555259 RPS20P60866 119 aaKnown RBP5.64□□□□□ -1.51
SCFD1-215ENST00000555259 BORCS7-ASMTA0A0B4J1R7 106 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 SDHAF1A6NFY7 115 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 UBE2BP63146 152 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 SRSF3P84103 164 aaKnown RBP5.63□□□□□ -1.51
SCFD1-215ENST00000555259 LYZL1Q6UWQ5 148 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 TMUB2Q71RG4 321 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 KRTAP7-1Q8IUC3 87 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 C1orf196B1AJZ1 125 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 M0QXV9 152 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 ZNF861PO60384 105 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 SPAG11BQ08648 103 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 MRPL52Q86TS9 123 aaKnown RBP5.63□□□□□ -1.51
SCFD1-215ENST00000555259 TYMSOSQ8TAI1 123 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 IMMP2LQ96T52 175 aa5.63□□□□□ -1.51
SCFD1-215ENST00000555259 MRPL35Q9NZE8 188 aaKnown RBP5.63□□□□□ -1.51
SCFD1-215ENST00000555259 G3V3Q6 166 aa5.62□□□□□ -1.51
SCFD1-215ENST00000555259 I3L3M4 83 aa5.62□□□□□ -1.51
SCFD1-215ENST00000555259 PFDN1O60925 122 aa5.62□□□□□ -1.51
SCFD1-215ENST00000555259 UPK1BO75841 260 aa5.62□□□□□ -1.51
SCFD1-215ENST00000555259 RPL35P42766 123 aaKnown RBP5.62□□□□□ -1.51
SCFD1-215ENST00000555259 MRAP2Q96G30 205 aa5.62□□□□□ -1.51
SCFD1-215ENST00000555259 IGLV7-46A0A075B6I9 117 aa5.61□□□□□ -1.51
SCFD1-215ENST00000555259 XKRY2A2RUG3 117 aa5.61□□□□□ -1.51
SCFD1-215ENST00000555259 TLX1NBP0CAT3 122 aa5.61□□□□□ -1.51
SCFD1-215ENST00000555259 PMCHP20382 165 aa5.61□□□□□ -1.51
SCFD1-215ENST00000555259 IFITM3Q01628 133 aa5.61□□□□□ -1.51
SCFD1-215ENST00000555259 TWIST1Q15672 202 aa5.61□□□□□ -1.51
SCFD1-215ENST00000555259 C5orf38Q86SI9 138 aa5.61□□□□□ -1.51
SCFD1-215ENST00000555259 C9orf62Q8N4C0 152 aa5.61□□□□□ -1.51
SCFD1-215ENST00000555259 TSHBP01222 138 aa5.6□□□□□ -1.51
SCFD1-215ENST00000555259 IFNA1P01562 189 aa5.6□□□□□ -1.51
SCFD1-215ENST00000555259 CRYGAP11844 174 aa5.6□□□□□ -1.51
SCFD1-215ENST00000555259 CTRLP40313 264 aa5.6□□□□□ -1.51
SCFD1-215ENST00000555259 Q5BKY6 102 aa5.6□□□□□ -1.51
SCFD1-215ENST00000555259 CNFNQ9BYD5 112 aa5.6□□□□□ -1.51
SCFD1-215ENST00000555259 GAGE2EQ4V326 116 aa5.59□□□□□ -1.51
SCFD1-215ENST00000555259 CENPWQ5EE01 88 aa5.59□□□□□ -1.51
SCFD1-215ENST00000555259 C10orf25Q5T742 122 aa5.59□□□□□ -1.51
SCFD1-215ENST00000555259 OR10D4PQ8NGN7 298 aa5.59□□□□□ -1.51
SCFD1-215ENST00000555259 TMEM242Q9NWH2 141 aa5.59□□□□□ -1.51
SCFD1-215ENST00000555259 GAGE2DQ9UEU5 116 aa5.59□□□□□ -1.51
SCFD1-215ENST00000555259 ALG5Q9Y673 324 aa5.59□□□□□ -1.51
SCFD1-215ENST00000555259 TRAV13-1A0A0B4J241 112 aa5.59□□□□□ -1.52
SCFD1-215ENST00000555259 A0A1B0GV50 99 aa5.59□□□□□ -1.52
SCFD1-215ENST00000555259 TEX261Q6UWH6 196 aa5.59□□□□□ -1.52
SCFD1-215ENST00000555259 SFT2D1Q8WV19 159 aa5.59□□□□□ -1.52
SCFD1-215ENST00000555259 S100ZQ8WXG8 99 aa5.59□□□□□ -1.52
SCFD1-215ENST00000555259 SMDT1Q9H4I9 107 aa5.59□□□□□ -1.52
SCFD1-215ENST00000555259 TRBV6-5A0A0K0K1A5 114 aa5.58□□□□□ -1.52
SCFD1-215ENST00000555259 F8WDY8 70 aa5.58□□□□□ -1.52
SCFD1-215ENST00000555259 NDUFA1O15239 70 aa5.58□□□□□ -1.52
SCFD1-215ENST00000555259 FOXA3P55318 350 aaPredicted RBP5.58□□□□□ -1.52
SCFD1-215ENST00000555259 RNASE13Q5GAN3 156 aaKnown RBP5.58□□□□□ -1.52
SCFD1-215ENST00000555259 LINC00299Q6ZSB3 139 aa5.58□□□□□ -1.52
SCFD1-215ENST00000555259 LINC00173Q6ZV60 143 aa5.58□□□□□ -1.52
SCFD1-215ENST00000555259 RNASE7Q9H1E1 156 aaKnown RBP5.58□□□□□ -1.52
SCFD1-215ENST00000555259 C6orf48Q9UBA6 75 aa5.58□□□□□ -1.52
SCFD1-215ENST00000555259 C7orf77A4D0Y5 90 aa5.57□□□□□ -1.52
SCFD1-215ENST00000555259 TMEM241Q24JQ0 296 aa5.57□□□□□ -1.52
SCFD1-215ENST00000555259 UNQ6190/PRO20217Q6UXQ8 127 aa5.57□□□□□ -1.52
SCFD1-215ENST00000555259 KCNRGQ8N5I3 272 aa5.57□□□□□ -1.52
SCFD1-215ENST00000555259 ORAOV1Q8WV07 137 aa5.57□□□□□ -1.52
SCFD1-215ENST00000555259 MBD3L1Q8WWY6 194 aa5.57□□□□□ -1.52
SCFD1-215ENST00000555259 C11orf52Q96A22 123 aa5.57□□□□□ -1.52
SCFD1-215ENST00000555259 FAM210AQ96ND0 272 aa5.57□□□□□ -1.52
SCFD1-215ENST00000555259 FXYD6-FXYD2A0A087WZ82 144 aa5.56□□□□□ -1.52
SCFD1-215ENST00000555259 KRTAP13-2Q52LG2 175 aa5.56□□□□□ -1.52
SCFD1-215ENST00000555259 SMIM15Q7Z3B0 74 aa5.56□□□□□ -1.52
SCFD1-215ENST00000555259 LINC00304Q8N9R0 145 aa5.56□□□□□ -1.52
SCFD1-215ENST00000555259 SMIM12Q96EX1 92 aa5.56□□□□□ -1.52
SCFD1-215ENST00000555259 KRTAP4-1Q9BYQ7 146 aa5.56□□□□□ -1.52
SCFD1-215ENST00000555259 CSDC2Q9Y534 153 aaKnown RBP5.56□□□□□ -1.52
SCFD1-215ENST00000555259 NUPR1O60356 82 aa5.55□□□□□ -1.52
SCFD1-215ENST00000555259 C9orf129Q5T035 196 aaKnown RBP5.55□□□□□ -1.52
SCFD1-215ENST00000555259 FAM213BQ8TBF2 198 aa5.55□□□□□ -1.52
SCFD1-215ENST00000555259 CTDSP1Q9GZU7 261 aa5.55□□□□□ -1.52
SCFD1-215ENST00000555259 PPDPFQ9H3Y8 114 aa5.55□□□□□ -1.52
SCFD1-215ENST00000555259 ST20Q9HBF5 79 aa5.55□□□□□ -1.52
SCFD1-215ENST00000555259 CYTL1Q9NRR1 136 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms