RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 ZNF25P17030 456 aaPredicted RBP8.24□□□□□ -1.09
VPS33A-207ENST00000542790 KRTAP10-2P60368 255 aa8.24□□□□□ -1.09
VPS33A-207ENST00000542790 REG3AQ06141 175 aa8.24□□□□□ -1.09
VPS33A-207ENST00000542790 RNASEKQ6P5S7 137 aaKnown RBP8.24□□□□□ -1.09
VPS33A-207ENST00000542790 PRELID3AQ96N28 172 aa8.24□□□□□ -1.09
VPS33A-207ENST00000542790 LAMTOR2Q9Y2Q5 125 aa8.24□□□□□ -1.09
VPS33A-207ENST00000542790 FRAS1Q86XX4 4008 aa8.24□□□□□ -1.09
VPS33A-207ENST00000542790 TRAV8-4A0A0B4J246 113 aa8.23□□□□□ -1.09
VPS33A-207ENST00000542790 NPYP01303 97 aa8.23□□□□□ -1.09
VPS33A-207ENST00000542790 MAPKAPK5-AS1Q8N8E1 139 aa8.23□□□□□ -1.09
VPS33A-207ENST00000542790 TMEM101Q96IK0 257 aa8.23□□□□□ -1.09
VPS33A-207ENST00000542790 SMIM2Q9BVW6 85 aa8.23□□□□□ -1.09
VPS33A-207ENST00000542790 BIRC6Q9NR09 4857 aa8.22□□□□□ -1.09
VPS33A-207ENST00000542790 SMAGPQ0VAQ4 97 aa8.22□□□□□ -1.09
VPS33A-207ENST00000542790 COX19Q49B96 90 aa8.22□□□□□ -1.09
VPS33A-207ENST00000542790 CLPSL2Q6UWE3 100 aa8.22□□□□□ -1.09
VPS33A-207ENST00000542790 Q8N814 137 aa8.22□□□□□ -1.09
VPS33A-207ENST00000542790 LCE4AQ5TA78 99 aa8.21□□□□□ -1.1
VPS33A-207ENST00000542790 MRPL52Q86TS9 123 aaKnown RBP8.21□□□□□ -1.1
VPS33A-207ENST00000542790 OR5A1Q8NGJ0 315 aa8.21□□□□□ -1.1
VPS33A-207ENST00000542790 NTN5Q8WTR8 489 aaPredicted RBP8.21□□□□□ -1.1
VPS33A-207ENST00000542790 BAALCQ8WXS3 180 aa8.21□□□□□ -1.1
VPS33A-207ENST00000542790 TMEM18Q96B42 140 aa8.21□□□□□ -1.1
VPS33A-207ENST00000542790 GNB1LQ9BYB4 327 aa8.21□□□□□ -1.1
VPS33A-207ENST00000542790 HECTD4Q9Y4D8 3996 aa8.2□□□□□ -1.1
VPS33A-207ENST00000542790 PRSS47A8MTI9 375 aa8.2□□□□□ -1.1
VPS33A-207ENST00000542790 HLA-DQA1P01909 254 aa8.2□□□□□ -1.1
VPS33A-207ENST00000542790 RAB5AP20339 215 aa8.2□□□□□ -1.1
VPS33A-207ENST00000542790 DGAT2L7PQ6IED9 249 aa8.2□□□□□ -1.1
VPS33A-207ENST00000542790 MAP1LC3AQ9H492 121 aa8.2□□□□□ -1.1
VPS33A-207ENST00000542790 IGLV10-54A0A075B6I4 117 aa8.19□□□□□ -1.1
VPS33A-207ENST00000542790 LECT2O14960 151 aa8.19□□□□□ -1.1
VPS33A-207ENST00000542790 CSDC2Q9Y534 153 aaKnown RBP8.19□□□□□ -1.1
VPS33A-207ENST00000542790 PKD1P98161 4303 aa8.19□□□□□ -1.1
VPS33A-207ENST00000542790 IGKV3OR2-268A0A0C4DH90 116 aa8.18□□□□□ -1.1
VPS33A-207ENST00000542790 LOC389332A0A1B0GUA5 103 aa8.18□□□□□ -1.1
VPS33A-207ENST00000542790 MT-ND6P03923 174 aa8.18□□□□□ -1.1
VPS33A-207ENST00000542790 LINC00310P59036 64 aa8.18□□□□□ -1.1
VPS33A-207ENST00000542790 WFDC2Q14508 124 aa8.18□□□□□ -1.1
VPS33A-207ENST00000542790 SLC7A5P1Q8MH63 180 aa8.18□□□□□ -1.1
VPS33A-207ENST00000542790 ZNF664Q8N3J9 261 aa8.18□□□□□ -1.1
VPS33A-207ENST00000542790 CDC42SE2Q9NRR3 84 aa8.18□□□□□ -1.1
VPS33A-207ENST00000542790 IGLV5-52A0A0A0MRZ9 124 aa8.17□□□□□ -1.1
VPS33A-207ENST00000542790 C14orf177Q52M58 125 aa8.17□□□□□ -1.1
VPS33A-207ENST00000542790 KRTAP26-1Q6PEX3 210 aa8.17□□□□□ -1.1
VPS33A-207ENST00000542790 Q8N8P6 123 aa8.17□□□□□ -1.1
VPS33A-207ENST00000542790 TIMM21Q9BVV7 248 aa8.17□□□□□ -1.1
VPS33A-207ENST00000542790 UBE2D4Q9Y2X8 147 aa8.17□□□□□ -1.1
VPS33A-207ENST00000542790 K7EMI3 77 aa8.16□□□□□ -1.1
VPS33A-207ENST00000542790 GCSHP23434 173 aa8.16□□□□□ -1.1
VPS33A-207ENST00000542790 FUSP35637 526 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS33A-207ENST00000542790 KRTAP19-4Q3LI73 84 aa8.16□□□□□ -1.1
VPS33A-207ENST00000542790 KIAA1644Q3SXP7 199 aa8.16□□□□□ -1.1
VPS33A-207ENST00000542790 DNAH11Q96DT5 4516 aa8.16□□□□□ -1.1
VPS33A-207ENST00000542790 NXT2Q9NPJ8 142 aaKnown RBP8.16□□□□□ -1.1
VPS33A-207ENST00000542790 TGIF2-C20orf24A0A0A6YYL0 155 aa8.15□□□□□ -1.1
VPS33A-207ENST00000542790 USP17L23D6RBM5 183 aa8.15□□□□□ -1.1
VPS33A-207ENST00000542790 FABP9Q0Z7S8 132 aa8.15□□□□□ -1.1
VPS33A-207ENST00000542790 SS18Q15532 418 aa8.15□□□□□ -1.1
VPS33A-207ENST00000542790 ORMDL2Q53FV1 153 aa8.15□□□□□ -1.1
VPS33A-207ENST00000542790 CHCHD10Q8WYQ3 142 aaPredicted RBP8.15□□□□□ -1.1
VPS33A-207ENST00000542790 SPANXA1Q9NS26 97 aa8.15□□□□□ -1.1
VPS33A-207ENST00000542790 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.14□□□□□ -1.11
VPS33A-207ENST00000542790 LINC00959A0A1B0GUT2 108 aa8.14□□□□□ -1.11
VPS33A-207ENST00000542790 GAGE12HA6NDE8 117 aa8.14□□□□□ -1.11
VPS33A-207ENST00000542790 RPL39P62891 51 aaKnown RBP8.14□□□□□ -1.11
VPS33A-207ENST00000542790 ALKBH7Q9BT30 221 aaPredicted RBP8.14□□□□□ -1.11
VPS33A-207ENST00000542790 CCL25O15444 150 aa8.13□□□□□ -1.11
VPS33A-207ENST00000542790 CDK2AP2O75956 126 aa8.13□□□□□ -1.11
VPS33A-207ENST00000542790 G0S2P27469 103 aa8.13□□□□□ -1.11
VPS33A-207ENST00000542790 IFI27P40305 119 aaPredicted RBP8.13□□□□□ -1.11
VPS33A-207ENST00000542790 LCE1DQ5T752 114 aa8.13□□□□□ -1.11
VPS33A-207ENST00000542790 PRSS3P2Q8NHM4 247 aa8.13□□□□□ -1.11
VPS33A-207ENST00000542790 TRAPPC1Q9Y5R8 145 aa8.13□□□□□ -1.11
VPS33A-207ENST00000542790 C1orf196B1AJZ1 125 aa8.12□□□□□ -1.11
VPS33A-207ENST00000542790 XCL1P47992 114 aa8.12□□□□□ -1.11
VPS33A-207ENST00000542790 MRPS36P82909 103 aaKnown RBP8.12□□□□□ -1.11
VPS33A-207ENST00000542790 CFAP161Q6P656 301 aa8.12□□□□□ -1.11
VPS33A-207ENST00000542790 SMCO4Q9NRQ5 59 aa8.12□□□□□ -1.11
VPS33A-207ENST00000542790 PYGO1Q9Y3Y4 419 aa8.12□□□□□ -1.11
VPS33A-207ENST00000542790 PRSS1P07477 247 aa8.11□□□□□ -1.11
VPS33A-207ENST00000542790 KRTAP10-1P60331 282 aa8.11□□□□□ -1.11
VPS33A-207ENST00000542790 CD164L2Q6UWJ8 174 aa8.11□□□□□ -1.11
VPS33A-207ENST00000542790 Q6ZUT4 128 aa8.11□□□□□ -1.11
VPS33A-207ENST00000542790 CYSLTR1Q9Y271 337 aa8.11□□□□□ -1.11
VPS33A-207ENST00000542790 DYNC1H1Q14204 4646 aaKnown RBP8.11□□□□□ -1.11
VPS33A-207ENST00000542790 TRAV13-1A0A0B4J241 112 aa8.1□□□□□ -1.11
VPS33A-207ENST00000542790 FOXI1Q12951 378 aa8.1□□□□□ -1.11
VPS33A-207ENST00000542790 RNASE13Q5GAN3 156 aaKnown RBP8.1□□□□□ -1.11
VPS33A-207ENST00000542790 C2orf66Q6UXQ4 117 aa8.1□□□□□ -1.11
VPS33A-207ENST00000542790 YPEL4Q96NS1 127 aa8.1□□□□□ -1.11
VPS33A-207ENST00000542790 PLA2G2DQ9UNK4 145 aa8.1□□□□□ -1.11
VPS33A-207ENST00000542790 hDV102S1A0JD36 115 aa8.09□□□□□ -1.11
VPS33A-207ENST00000542790 OPRPNQ99935 248 aaPredicted RBP8.09□□□□□ -1.11
VPS33A-207ENST00000542790 PKHD1P08F94 4074 aa8.09□□□□□ -1.11
VPS33A-207ENST00000542790 LINC01546A6NGU7 62 aa8.08□□□□□ -1.12
VPS33A-207ENST00000542790 NPSP0C0P6 89 aa8.08□□□□□ -1.12
VPS33A-207ENST00000542790 CBLN2Q8IUK8 224 aa8.08□□□□□ -1.12
VPS33A-207ENST00000542790 FAM104AQ969W3 186 aa8.08□□□□□ -1.12
VPS33A-207ENST00000542790 KIAA1109Q2LD37 5005 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms