RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 NSUN5P1Q3KNT7 163 aa5.92□□□□□ -1.46
PDLIM5-221ENST00000542407 Q6YL49 198 aa5.92□□□□□ -1.46
PDLIM5-221ENST00000542407 SMIM2Q9BVW6 85 aa5.92□□□□□ -1.46
PDLIM5-221ENST00000542407 PRAC2D3DTV9 90 aa5.92□□□□□ -1.46
PDLIM5-221ENST00000542407 H3BMM0 161 aa5.92□□□□□ -1.46
PDLIM5-221ENST00000542407 PRR15Q8IV56 129 aa5.92□□□□□ -1.46
PDLIM5-221ENST00000542407 UBE2WQ96B02 151 aa5.92□□□□□ -1.46
PDLIM5-221ENST00000542407 IGKV3D-20A0A0C4DH25 116 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 C11orf86A6NJI1 115 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 ORMDL2Q53FV1 153 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 PRR26Q8N8Z3 221 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 RPL39LQ96EH5 51 aaKnown RBP5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 USMG5Q96IX5 58 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 CNFNQ9BYD5 112 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 RBM12B-AS1Q9P1G2 102 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 PDZD2O15018 2839 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 M0R381 172 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 MGPP08493 103 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 SS18Q15532 418 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 ATXN8Q156A1 80 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 C2orf82Q6UX34 121 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 ANK3Q12955 4377 aaKnown RBP5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 IGHV3-64A0A075B6Q5 118 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 IGHV3-66A0A0C4DH42 116 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 KNCNA6PVL3 124 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 UNQ9165/PRO28630Q6UXU0 137 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 TOMM6Q96B49 74 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 C11orf21Q9P2W6 132 aa5.91□□□□□ -1.46
PDLIM5-221ENST00000542407 ABCA12Q86UK0 2595 aa5.9□□□□□ -1.46
PDLIM5-221ENST00000542407 IGHV3OR16-13A0A075B7E8 117 aa5.9□□□□□ -1.46
PDLIM5-221ENST00000542407 IGHV3-74A0A0B4J1X5 117 aa5.9□□□□□ -1.46
PDLIM5-221ENST00000542407 TSPEAR-AS2P59090 65 aa5.9□□□□□ -1.46
PDLIM5-221ENST00000542407 SUMO2P61956 95 aaKnown RBP5.9□□□□□ -1.46
PDLIM5-221ENST00000542407 SERP2Q8N6R1 65 aa5.9□□□□□ -1.46
PDLIM5-221ENST00000542407 C14orf178Q8N769 122 aaPredicted RBP5.9□□□□□ -1.46
PDLIM5-221ENST00000542407 NDUFA4O00483 81 aa5.9□□□□□ -1.47
PDLIM5-221ENST00000542407 IGHV3-33P01772 117 aa5.9□□□□□ -1.47
PDLIM5-221ENST00000542407 LGALS3P17931 250 aaKnown RBP5.9□□□□□ -1.47
PDLIM5-221ENST00000542407 CXCL5P42830 114 aa5.9□□□□□ -1.47
PDLIM5-221ENST00000542407 HIST1H4AP62805 103 aaKnown RBP5.9□□□□□ -1.47
PDLIM5-221ENST00000542407 SERTAD4-AS1Q5TG53 156 aa5.9□□□□□ -1.47
PDLIM5-221ENST00000542407 C10orf99Q6UWK7 81 aa5.9□□□□□ -1.47
PDLIM5-221ENST00000542407 COX8CQ7Z4L0 72 aa5.9□□□□□ -1.47
PDLIM5-221ENST00000542407 ZNF702PQ9H963 129 aa5.9□□□□□ -1.47
PDLIM5-221ENST00000542407 SLC25A29Q8N8R3 303 aa5.89□□□□□ -1.47
PDLIM5-221ENST00000542407 METTL26Q96S19 204 aa5.89□□□□□ -1.47
PDLIM5-221ENST00000542407 NAV2Q8IVL1 2488 aa5.89□□□□□ -1.47
PDLIM5-221ENST00000542407 IGHV3-11P01762 117 aa5.89□□□□□ -1.47
PDLIM5-221ENST00000542407 KRTAP1-1Q07627 177 aa5.89□□□□□ -1.47
PDLIM5-221ENST00000542407 C5orf38Q86SI9 138 aa5.89□□□□□ -1.47
PDLIM5-221ENST00000542407 LINC01600Q96MT4 127 aa5.89□□□□□ -1.47
PDLIM5-221ENST00000542407 IGHV3-49A0A0A0MS15 119 aa5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 SNRPD3P62318 126 aaKnown RBP5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 GPHB5Q86YW7 130 aa5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 MUSTN1Q8IVN3 82 aa5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 MXRA5Q9NR99 2828 aa5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 TRBV10-2A0A0K0K1G8 114 aa5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 EIF4EBP3O60516 100 aaPredicted RBP5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 ZNF22P17026 224 aaPredicted RBP5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 USP17L23D6RBM5 183 aa5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 PRSS2P07478 247 aa5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 LINC00643Q86TS7 51 aa5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 Q8N2B8 174 aa5.88□□□□□ -1.47
PDLIM5-221ENST00000542407 IGHV7-4-1A0A0J9YVY3 117 aa5.87□□□□□ -1.47
PDLIM5-221ENST00000542407 SOCS3O14543 225 aa5.87□□□□□ -1.47
PDLIM5-221ENST00000542407 S100A4P26447 101 aaKnown RBP5.87□□□□□ -1.47
PDLIM5-221ENST00000542407 TMEM263Q8WUH6 116 aaKnown RBP5.87□□□□□ -1.47
PDLIM5-221ENST00000542407 SLC50A1Q9BRV3 221 aa5.87□□□□□ -1.47
PDLIM5-221ENST00000542407 CUBNO60494 3623 aa5.87□□□□□ -1.47
PDLIM5-221ENST00000542407 TRIAP1O43715 76 aa5.87□□□□□ -1.47
PDLIM5-221ENST00000542407 RPL39P62891 51 aaKnown RBP5.87□□□□□ -1.47
PDLIM5-221ENST00000542407 LAMTOR3Q9UHA4 124 aa5.87□□□□□ -1.47
PDLIM5-221ENST00000542407 IGLV4-69A0A075B6H9 119 aa5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 CCL24O00175 119 aa5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 SYNJ2BPP57105 145 aa5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 ITPR3Q14573 2671 aa5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 H7C423 109 aa5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 ACYP1P07311 99 aa5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 RPL18AQ02543 176 aaKnown RBP5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 CIRBPQ14011 172 aaKnown RBP5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 FHL2Q14192 279 aa5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 CLEC2BQ92478 149 aa5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 TEX15Q9BXT5 2789 aa5.86□□□□□ -1.47
PDLIM5-221ENST00000542407 CSPG4Q6UVK1 2322 aa5.85□□□□□ -1.47
PDLIM5-221ENST00000542407 TMEM243Q9BU79 118 aa5.85□□□□□ -1.47
PDLIM5-221ENST00000542407 DOPEY2Q9Y3R5 2298 aa5.85□□□□□ -1.47
PDLIM5-221ENST00000542407 DCANP1Q8TF63 244 aa5.85□□□□□ -1.47
PDLIM5-221ENST00000542407 PHLDA3Q9Y5J5 127 aa5.85□□□□□ -1.47
PDLIM5-221ENST00000542407 TRAV8-3A0A0A6YYJ7 113 aa5.85□□□□□ -1.47
PDLIM5-221ENST00000542407 TSHBP01222 138 aa5.85□□□□□ -1.47
PDLIM5-221ENST00000542407 PAPPA-AS1Q5QFB9 102 aa5.85□□□□□ -1.47
PDLIM5-221ENST00000542407 TRBV7-6A0A0J9YX20 115 aa5.84□□□□□ -1.47
PDLIM5-221ENST00000542407 DEFB121Q5J5C9 76 aa5.84□□□□□ -1.47
PDLIM5-221ENST00000542407 Q6ZSV7 163 aa5.84□□□□□ -1.47
PDLIM5-221ENST00000542407 PLAC8L1A1L4L8 177 aa5.84□□□□□ -1.48
PDLIM5-221ENST00000542407 C9orf47Q6ZRZ4 202 aa5.84□□□□□ -1.48
PDLIM5-221ENST00000542407 OPRPNQ99935 248 aaPredicted RBP5.84□□□□□ -1.48
PDLIM5-221ENST00000542407 LINC00474Q9P2X8 69 aa5.84□□□□□ -1.48
PDLIM5-221ENST00000542407 HELZ2Q9BYK8 2649 aaKnown RBP5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms