RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 AP5S1Q9NUS5 200 aa11.8□□□□□ -0.52
CLSTN3-210ENST00000540931 PSCAO43653 123 aa11.79□□□□□ -0.52
CLSTN3-210ENST00000540931 LINC00614P0C842 121 aa11.79□□□□□ -0.52
CLSTN3-210ENST00000540931 REG3AQ06141 175 aa11.79□□□□□ -0.52
CLSTN3-210ENST00000540931 LINC00269Q8N2A0 174 aa11.79□□□□□ -0.52
CLSTN3-210ENST00000540931 C18orf32Q8TCD1 76 aa11.79□□□□□ -0.52
CLSTN3-210ENST00000540931 UBE2D4Q9Y2X8 147 aa11.79□□□□□ -0.52
CLSTN3-210ENST00000540931 EREGO14944 169 aa11.78□□□□□ -0.52
CLSTN3-210ENST00000540931 TRGC2P03986 189 aa11.78□□□□□ -0.52
CLSTN3-210ENST00000540931 MRPS36P82909 103 aaKnown RBP11.78□□□□□ -0.52
CLSTN3-210ENST00000540931 ZNF664Q8N3J9 261 aa11.78□□□□□ -0.52
CLSTN3-210ENST00000540931 DEFB104AQ8WTQ1 72 aa11.78□□□□□ -0.52
CLSTN3-210ENST00000540931 C2orf66Q6UXQ4 117 aa11.77□□□□□ -0.53
CLSTN3-210ENST00000540931 CHCHD1Q96BP2 118 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-210ENST00000540931 CDC42SE2Q9NRR3 84 aa11.77□□□□□ -0.53
CLSTN3-210ENST00000540931 IGLV4-60A0A075B6I1 120 aa11.76□□□□□ -0.53
CLSTN3-210ENST00000540931 Q6ZN92 141 aa11.76□□□□□ -0.53
CLSTN3-210ENST00000540931 Q9HAA7 133 aa11.76□□□□□ -0.53
CLSTN3-210ENST00000540931 KIAA1109Q2LD37 5005 aa11.76□□□□□ -0.53
CLSTN3-210ENST00000540931 SCO1O75880 301 aa11.75□□□□□ -0.53
CLSTN3-210ENST00000540931 ENHOQ6UWT2 76 aa11.75□□□□□ -0.53
CLSTN3-210ENST00000540931 TOMM6Q96B49 74 aa11.75□□□□□ -0.53
CLSTN3-210ENST00000540931 IGKV2D-24A0A075B6R9 120 aa11.74□□□□□ -0.53
CLSTN3-210ENST00000540931 SS18Q15532 418 aa11.74□□□□□ -0.53
CLSTN3-210ENST00000540931 BAGE3Q86Y29 109 aa11.74□□□□□ -0.53
CLSTN3-210ENST00000540931 Q8N3U1 123 aa11.74□□□□□ -0.53
CLSTN3-210ENST00000540931 TMEM141Q96I45 108 aa11.74□□□□□ -0.53
CLSTN3-210ENST00000540931 TIMM17AQ99595 171 aa11.74□□□□□ -0.53
CLSTN3-210ENST00000540931 DNAH6Q9C0G6 4158 aa11.73□□□□□ -0.53
CLSTN3-210ENST00000540931 C1orf196B1AJZ1 125 aa11.73□□□□□ -0.53
CLSTN3-210ENST00000540931 RTL8CO15255 209 aa11.73□□□□□ -0.53
CLSTN3-210ENST00000540931 RPL39P62891 51 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-210ENST00000540931 Q6ZRN7 208 aaPredicted RBP11.73□□□□□ -0.53
CLSTN3-210ENST00000540931 ERASQ7Z444 233 aa11.73□□□□□ -0.53
CLSTN3-210ENST00000540931 PRSS29PA6NIE9 313 aa11.72□□□□□ -0.53
CLSTN3-210ENST00000540931 C2orf88Q9BSF0 95 aa11.72□□□□□ -0.53
CLSTN3-210ENST00000540931 HBDP02042 147 aa11.71□□□□□ -0.53
CLSTN3-210ENST00000540931 C14orf177Q52M58 125 aa11.71□□□□□ -0.53
CLSTN3-210ENST00000540931 TEX43Q6ZNM6 134 aa11.71□□□□□ -0.53
CLSTN3-210ENST00000540931 RYR1P21817 5038 aa11.71□□□□□ -0.53
CLSTN3-210ENST00000540931 HECTD4Q9Y4D8 3996 aa11.7□□□□□ -0.54
CLSTN3-210ENST00000540931 SEC11AP67812 179 aa11.7□□□□□ -0.54
CLSTN3-210ENST00000540931 SCGB3A1Q96QR1 104 aa11.7□□□□□ -0.54
CLSTN3-210ENST00000540931 VCX2Q9H322 139 aa11.7□□□□□ -0.54
CLSTN3-210ENST00000540931 HSBP1O75506 76 aa11.69□□□□□ -0.54
CLSTN3-210ENST00000540931 CFAP161Q6P656 301 aa11.69□□□□□ -0.54
CLSTN3-210ENST00000540931 LINC00959A0A1B0GUT2 108 aa11.68□□□□□ -0.54
CLSTN3-210ENST00000540931 IGIPA6NJ69 53 aa11.68□□□□□ -0.54
CLSTN3-210ENST00000540931 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-210ENST00000540931 ATP5LO75964 103 aa11.68□□□□□ -0.54
CLSTN3-210ENST00000540931 CLPSL2Q6UWE3 100 aa11.68□□□□□ -0.54
CLSTN3-210ENST00000540931 IGLV4-3A0A075B6K6 122 aa11.67□□□□□ -0.54
CLSTN3-210ENST00000540931 IGKV3OR2-268A0A0C4DH90 116 aa11.66□□□□□ -0.54
CLSTN3-210ENST00000540931 IFITM10A6NMD0 228 aa11.66□□□□□ -0.54
CLSTN3-210ENST00000540931 CD164L2Q6UWJ8 174 aa11.66□□□□□ -0.54
CLSTN3-210ENST00000540931 Q6ZUT4 128 aa11.66□□□□□ -0.54
CLSTN3-210ENST00000540931 CHCHD10Q8WYQ3 142 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-210ENST00000540931 AMELXQ99217 191 aa11.65□□□□□ -0.54
CLSTN3-210ENST00000540931 IGLV10-54A0A075B6I4 117 aa11.64□□□□□ -0.55
CLSTN3-210ENST00000540931 A0A087WTM6 91 aa11.64□□□□□ -0.55
CLSTN3-210ENST00000540931 TRAV13-1A0A0B4J241 112 aa11.64□□□□□ -0.55
CLSTN3-210ENST00000540931 NTN5Q8WTR8 489 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-210ENST00000540931 URB1-AS1Q96HZ7 61 aa11.64□□□□□ -0.55
CLSTN3-210ENST00000540931 PGPEP1Q9NXJ5 209 aa11.64□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST1H2BKO60814 126 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST1H2BJP06899 126 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST1H2BOP23527 126 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST1H2BBP33778 126 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST1H2BDP58876 126 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST1H2BCP62807 126 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 TNP2Q05952 138 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST2H2BEQ16778 126 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 CDPF1Q6NVV7 123 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST1H2BHQ93079 126 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST1H2BNQ99877 126 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 HIST1H2BMQ99879 126 aa11.63□□□□□ -0.55
CLSTN3-210ENST00000540931 LRCOL1A6NCL2 159 aa11.61□□□□□ -0.55
CLSTN3-210ENST00000540931 GAGE12HA6NDE8 117 aa11.61□□□□□ -0.55
CLSTN3-210ENST00000540931 APOMO95445 188 aa11.61□□□□□ -0.55
CLSTN3-210ENST00000540931 XCL1P47992 114 aa11.61□□□□□ -0.55
CLSTN3-210ENST00000540931 PMVKQ15126 192 aa11.61□□□□□ -0.55
CLSTN3-210ENST00000540931 PDZD11Q5EBL8 140 aa11.61□□□□□ -0.55
CLSTN3-210ENST00000540931 FAM19A3Q7Z5A8 133 aa11.61□□□□□ -0.55
CLSTN3-210ENST00000540931 PACRGQ96M98 296 aaPredicted RBP11.61□□□□□ -0.55
CLSTN3-210ENST00000540931 COX7A2LO14548 114 aa11.6□□□□□ -0.55
CLSTN3-210ENST00000540931 SERF1AO75920 110 aa11.6□□□□□ -0.55
CLSTN3-210ENST00000540931 HERVK_113P63121 156 aa11.6□□□□□ -0.55
CLSTN3-210ENST00000540931 KRTAP26-1Q6PEX3 210 aa11.6□□□□□ -0.55
CLSTN3-210ENST00000540931 OPRPNQ99935 248 aaPredicted RBP11.6□□□□□ -0.55
CLSTN3-210ENST00000540931 HSPB8Q9UJY1 196 aa11.6□□□□□ -0.55
CLSTN3-210ENST00000540931 MALP21145 153 aa11.59□□□□□ -0.55
CLSTN3-210ENST00000540931 RNASE13Q5GAN3 156 aaKnown RBP11.59□□□□□ -0.55
CLSTN3-210ENST00000540931 LINC01561Q8N1V8 128 aa11.59□□□□□ -0.55
CLSTN3-210ENST00000540931 Q8N814 137 aa11.59□□□□□ -0.55
CLSTN3-210ENST00000540931 BAALCQ8WXS3 180 aa11.59□□□□□ -0.55
CLSTN3-210ENST00000540931 FAM104AQ969W3 186 aa11.59□□□□□ -0.55
CLSTN3-210ENST00000540931 A0A096LNJ9 63 aa11.58□□□□□ -0.56
CLSTN3-210ENST00000540931 IGHV1-58A0A0C4DH39 117 aa11.58□□□□□ -0.56
CLSTN3-210ENST00000540931 LEPROTL1O95214 131 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms