RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ENHOQ6UWT2 76 aa6.9□□□□□ -1.31
CLIP1-214ENST00000540539 C22orf34Q6ZV56 151 aa6.9□□□□□ -1.31
CLIP1-214ENST00000540539 ROS1P08922 2347 aa6.9□□□□□ -1.31
CLIP1-214ENST00000540539 COL12A1Q99715 3063 aa6.9□□□□□ -1.31
CLIP1-214ENST00000540539 S100A7L2Q5SY68 101 aa6.89□□□□□ -1.31
CLIP1-214ENST00000540539 ZFHX3Q15911 3703 aa6.89□□□□□ -1.31
CLIP1-214ENST00000540539 IGHV1-18A0A0C4DH31 117 aa6.89□□□□□ -1.31
CLIP1-214ENST00000540539 IGHV1-58A0A0C4DH39 117 aa6.89□□□□□ -1.31
CLIP1-214ENST00000540539 VCYO14598 125 aa6.89□□□□□ -1.31
CLIP1-214ENST00000540539 IGKV3-15P01624 115 aa6.89□□□□□ -1.31
CLIP1-214ENST00000540539 DEFB108BQ8NET1 73 aa6.89□□□□□ -1.31
CLIP1-214ENST00000540539 ABCA4P78363 2273 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 IGHV4OR15-8A0A075B7B6 117 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 A0A087WW49 117 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 TRAV13-2A0A0B4J235 113 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 CCL3L1P16619 93 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 ATP5EP56381 51 aaPredicted RBP6.88□□□□□ -1.31
CLIP1-214ENST00000540539 PRR9Q5T870 116 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 ATP5EP2Q5VTU8 51 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 GAFA1Q96PS6 74 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 CCL13Q99616 98 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 PHLDA3Q9Y5J5 127 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 ICE1Q9Y2F5 2266 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 HELZ2Q9BYK8 2649 aaKnown RBP6.88□□□□□ -1.31
CLIP1-214ENST00000540539 IGLV1-44P01699 117 aa6.88□□□□□ -1.31
CLIP1-214ENST00000540539 RNASE4P34096 147 aaKnown RBP6.88□□□□□ -1.31
CLIP1-214ENST00000540539 LINC00315P59091 139 aa6.87□□□□□ -1.31
CLIP1-214ENST00000540539 BLCAPP62952 87 aa6.87□□□□□ -1.31
CLIP1-214ENST00000540539 MRPL55Q7Z7F7 128 aaKnown RBP6.87□□□□□ -1.31
CLIP1-214ENST00000540539 IBA57-AS1B1ANH7 110 aa6.87□□□□□ -1.31
CLIP1-214ENST00000540539 M0R1B8 84 aa6.87□□□□□ -1.31
CLIP1-214ENST00000540539 LINC01560Q8TB33 94 aa6.87□□□□□ -1.31
CLIP1-214ENST00000540539 LINC00308Q8TCZ7 52 aa6.87□□□□□ -1.31
CLIP1-214ENST00000540539 UTP20O75691 2785 aaKnown RBP6.87□□□□□ -1.31
CLIP1-214ENST00000540539 PKDREJQ9NTG1 2253 aa6.87□□□□□ -1.31
CLIP1-214ENST00000540539 IGLV4-3A0A075B6K6 122 aa6.86□□□□□ -1.31
CLIP1-214ENST00000540539 S100A4P26447 101 aaKnown RBP6.86□□□□□ -1.31
CLIP1-214ENST00000540539 C6orf223Q8N319 242 aa6.86□□□□□ -1.31
CLIP1-214ENST00000540539 TENM4Q6N022 2769 aa6.86□□□□□ -1.31
CLIP1-214ENST00000540539 IGHV3OR16-8A0A075B7F1 116 aa6.86□□□□□ -1.31
CLIP1-214ENST00000540539 NCR3O14931 201 aa6.86□□□□□ -1.31
CLIP1-214ENST00000540539 PLA2G2AP14555 144 aa6.86□□□□□ -1.31
CLIP1-214ENST00000540539 SUMO4Q6EEV6 95 aa6.86□□□□□ -1.31
CLIP1-214ENST00000540539 ZNF625Q96I27 306 aaPredicted RBP6.86□□□□□ -1.31
CLIP1-214ENST00000540539 MUC4Q99102 2169 aa6.86□□□□□ -1.31
CLIP1-214ENST00000540539 A0A087WZ39 114 aa6.85□□□□□ -1.31
CLIP1-214ENST00000540539 VMO1Q7Z5L0 202 aa6.85□□□□□ -1.31
CLIP1-214ENST00000540539 KIF25-AS1Q9Y6Z4 181 aa6.85□□□□□ -1.31
CLIP1-214ENST00000540539 J3QKU1 62 aa6.85□□□□□ -1.31
CLIP1-214ENST00000540539 SOCS3O14543 225 aa6.85□□□□□ -1.31
CLIP1-214ENST00000540539 NDUFC1O43677 76 aa6.85□□□□□ -1.31
CLIP1-214ENST00000540539 BCE1O60756 84 aa6.85□□□□□ -1.31
CLIP1-214ENST00000540539 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.85□□□□□ -1.31
CLIP1-214ENST00000540539 F8W735 103 aaPredicted RBP6.84□□□□□ -1.31
CLIP1-214ENST00000540539 C19orf84I3L1E1 186 aa6.84□□□□□ -1.31
CLIP1-214ENST00000540539 IGF1P05019 195 aa6.84□□□□□ -1.31
CLIP1-214ENST00000540539 BSPH1Q075Z2 132 aa6.84□□□□□ -1.31
CLIP1-214ENST00000540539 LAMTOR3Q9UHA4 124 aa6.84□□□□□ -1.31
CLIP1-214ENST00000540539 USP9YO00507 2555 aaPredicted RBP6.84□□□□□ -1.31
CLIP1-214ENST00000540539 C11orf45Q8TAV5 145 aa6.84□□□□□ -1.31
CLIP1-214ENST00000540539 FASNP49327 2511 aaKnown RBP6.83□□□□□ -1.32
CLIP1-214ENST00000540539 A0A087WYN8 130 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 DAD1P61803 113 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 C15orf32Q32M92 178 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 RBM12B-AS1Q9P1G2 102 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 Q9UF83 564 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 DCHS2Q6V1P9 2916 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 DOPEY2Q9Y3R5 2298 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 LRBAP50851 2863 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 HRNRQ86YZ3 2850 aaPredicted RBP6.83□□□□□ -1.32
CLIP1-214ENST00000540539 TRBV10-3A0A0K0K1G6 114 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 ESRGQ1W209 222 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 C20orf203Q8NBC4 194 aa6.83□□□□□ -1.32
CLIP1-214ENST00000540539 GCN1Q92616 2671 aaKnown RBP6.83□□□□□ -1.32
CLIP1-214ENST00000540539 SPRY3O43610 288 aa6.82□□□□□ -1.32
CLIP1-214ENST00000540539 RPL11P62913 178 aaKnown RBP6.82□□□□□ -1.32
CLIP1-214ENST00000540539 TRAV10A0A0B4J240 114 aa6.82□□□□□ -1.32
CLIP1-214ENST00000540539 CLPSL1A2RUU4 121 aa6.82□□□□□ -1.32
CLIP1-214ENST00000540539 CENPEQ02224 2701 aa6.82□□□□□ -1.32
CLIP1-214ENST00000540539 PIK3CD-AS1Q5SR53 167 aa6.82□□□□□ -1.32
CLIP1-214ENST00000540539 CRYBG3Q68DQ2 2970 aa6.82□□□□□ -1.32
CLIP1-214ENST00000540539 WNK2Q9Y3S1 2297 aa6.82□□□□□ -1.32
CLIP1-214ENST00000540539 NDUFA1O15239 70 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 IGHV3-23P01764 117 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 RNASE3P12724 160 aaKnown RBP6.81□□□□□ -1.32
CLIP1-214ENST00000540539 UNQ9165/PRO28630Q6UXU0 137 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 FAM104AQ969W3 186 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 A0A087WWL8 130 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 IGHV3-35A0A0C4DH35 117 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 F5H697 171 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 CTSGP08311 255 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 MIFP14174 115 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 HIST2H2BCQ6DN03 193 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 HIST2H2BDQ6DRA6 164 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 AKAP6Q13023 2319 aa6.81□□□□□ -1.32
CLIP1-214ENST00000540539 TRBV6-5A0A0K0K1A5 114 aa6.8□□□□□ -1.32
CLIP1-214ENST00000540539 CD28P10747 220 aa6.8□□□□□ -1.32
CLIP1-214ENST00000540539 RNASE13Q5GAN3 156 aaKnown RBP6.8□□□□□ -1.32
CLIP1-214ENST00000540539 MIR7-3HGQ8N6C7 128 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms