RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 IGHV4-31P0DP07 118 aa14.7□□□□□ -0.06
TMEM260-203ENST00000539559 TMEM61Q8N0U2 210 aa14.7□□□□□ -0.06
TMEM260-203ENST00000539559 COX6A2Q02221 97 aa14.7□□□□□ -0.06
TMEM260-203ENST00000539559 NDUFA7O95182 113 aa14.69□□□□□ -0.06
TMEM260-203ENST00000539559 ABCA12Q86UK0 2595 aa14.69□□□□□ -0.06
TMEM260-203ENST00000539559 GAGE5Q13069 117 aa14.69□□□□□ -0.06
TMEM260-203ENST00000539559 GAGE6Q13070 117 aa14.69□□□□□ -0.06
TMEM260-203ENST00000539559 MYO9AB2RTY4 2548 aa14.68□□□□□ -0.06
TMEM260-203ENST00000539559 COX6CP09669 75 aa14.68□□□□□ -0.06
TMEM260-203ENST00000539559 TMEM101Q96IK0 257 aa14.67□□□□□ -0.06
TMEM260-203ENST00000539559 Q96MF0 132 aa14.67□□□□□ -0.06
TMEM260-203ENST00000539559 LINC01587Q99440 93 aa14.67□□□□□ -0.06
TMEM260-203ENST00000539559 WNK1Q9H4A3 2382 aa14.66□□□□□ -0.06
TMEM260-203ENST00000539559 IFITM1P13164 125 aa14.66□□□□□ -0.06
TMEM260-203ENST00000539559 CITED2Q99967 270 aaPredicted RBP14.66□□□□□ -0.06
TMEM260-203ENST00000539559 SPANXA1Q9NS26 97 aa14.66□□□□□ -0.06
TMEM260-203ENST00000539559 LST1O00453 97 aa14.65□□□□□ -0.06
TMEM260-203ENST00000539559 IGHV3OR16-12A0A075B7B8 117 aa14.64□□□□□ -0.07
TMEM260-203ENST00000539559 FSHBP01225 129 aa14.64□□□□□ -0.07
TMEM260-203ENST00000539559 DGAT2L7PQ6IED9 249 aa14.64□□□□□ -0.07
TMEM260-203ENST00000539559 Q9H8V8 135 aa14.64□□□□□ -0.07
TMEM260-203ENST00000539559 ZNF415Q09FC8 603 aa14.63□□□□□ -0.07
TMEM260-203ENST00000539559 EDA2RQ9HAV5 297 aa14.63□□□□□ -0.07
TMEM260-203ENST00000539559 CHD6Q8TD26 2715 aa14.63□□□□□ -0.07
TMEM260-203ENST00000539559 LINC00694P0DN24 101 aa14.63□□□□□ -0.07
TMEM260-203ENST00000539559 TMEM89A2RUT3 159 aa14.62□□□□□ -0.07
TMEM260-203ENST00000539559 PLA2G2AP14555 144 aa14.62□□□□□ -0.07
TMEM260-203ENST00000539559 H3BT86 120 aa14.61□□□□□ -0.07
TMEM260-203ENST00000539559 J3QKU1 62 aa14.61□□□□□ -0.07
TMEM260-203ENST00000539559 KHDC1LQ5JSQ8 128 aa14.61□□□□□ -0.07
TMEM260-203ENST00000539559 Q8N2B8 174 aa14.61□□□□□ -0.07
TMEM260-203ENST00000539559 C11orf72Q8NBR9 251 aa14.61□□□□□ -0.07
TMEM260-203ENST00000539559 LINC01600Q96MT4 127 aa14.61□□□□□ -0.07
TMEM260-203ENST00000539559 ZNF702PQ9H963 129 aa14.61□□□□□ -0.07
TMEM260-203ENST00000539559 CR1P17927 2039 aa14.61□□□□□ -0.07
TMEM260-203ENST00000539559 KRTAP1-3Q8IUG1 177 aa14.61□□□□□ -0.07
TMEM260-203ENST00000539559 RNF152Q8N8N0 203 aa14.61□□□□□ -0.07
TMEM260-203ENST00000539559 TRAV13-1A0A0B4J241 112 aa14.6□□□□□ -0.07
TMEM260-203ENST00000539559 Q6YL49 198 aa14.6□□□□□ -0.07
TMEM260-203ENST00000539559 UBE2E2Q96LR5 201 aa14.6□□□□□ -0.07
TMEM260-203ENST00000539559 YAE1D1Q9NRH1 226 aa14.6□□□□□ -0.07
TMEM260-203ENST00000539559 VPREB3Q9UKI3 123 aa14.6□□□□□ -0.07
TMEM260-203ENST00000539559 IGHV3-53P01767 116 aa14.6□□□□□ -0.07
TMEM260-203ENST00000539559 SOSTDC1Q6X4U4 206 aa14.6□□□□□ -0.07
TMEM260-203ENST00000539559 XCL2Q9UBD3 114 aa14.6□□□□□ -0.07
TMEM260-203ENST00000539559 TEX15Q9BXT5 2789 aa14.6□□□□□ -0.07
TMEM260-203ENST00000539559 NDUFA1O15239 70 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 LINC00308Q8TCZ7 52 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 AKAP9Q99996 3911 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 GAGE12JA6NER3 117 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 GAGE7O76087 117 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 GAGE12FP0CL80 117 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 GAGE12GP0CL81 117 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 GAGE12IP0CL82 117 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 GAGE4Q13068 117 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 TLN2Q9Y4G6 2542 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 APCP25054 2843 aa14.59□□□□□ -0.07
TMEM260-203ENST00000539559 LINC00242Q5T6M2 205 aa14.58□□□□□ -0.08
TMEM260-203ENST00000539559 MAP6D1Q9H9H5 199 aa14.58□□□□□ -0.08
TMEM260-203ENST00000539559 C3orf56Q8N813 242 aa14.58□□□□□ -0.08
TMEM260-203ENST00000539559 NIPBLQ6KC79 2804 aaeCLIP14.57□□□□□ -0.08
TMEM260-203ENST00000539559 HIST2H2BCQ6DN03 193 aa14.57□□□□□ -0.08
TMEM260-203ENST00000539559 CHCHD5Q9BSY4 110 aa14.57□□□□□ -0.08
TMEM260-203ENST00000539559 KMT2BQ9UMN6 2715 aaPredicted RBP14.57□□□□□ -0.08
TMEM260-203ENST00000539559 TENM4Q6N022 2769 aa14.56□□□□□ -0.08
TMEM260-203ENST00000539559 CIRBPQ14011 172 aaKnown RBP14.55□□□□□ -0.08
TMEM260-203ENST00000539559 TIMM17BO60830 172 aa14.55□□□□□ -0.08
TMEM260-203ENST00000539559 Q6Q795 121 aa14.55□□□□□ -0.08
TMEM260-203ENST00000539559 TIRAPP58753 221 aa14.54□□□□□ -0.08
TMEM260-203ENST00000539559 MEIG1Q5JSS6 88 aa14.54□□□□□ -0.08
TMEM260-203ENST00000539559 IGLV5-45A0A087WSX0 123 aa14.54□□□□□ -0.08
TMEM260-203ENST00000539559 TRGV1A0A0A0MS02 117 aa14.54□□□□□ -0.08
TMEM260-203ENST00000539559 PIK3CD-AS1Q5SR53 167 aa14.53□□□□□ -0.08
TMEM260-203ENST00000539559 WFDC11Q8NEX6 87 aa14.53□□□□□ -0.08
TMEM260-203ENST00000539559 SMIM1B2RUZ4 78 aa14.53□□□□□ -0.08
TMEM260-203ENST00000539559 DYNLRB2Q8TF09 96 aa14.53□□□□□ -0.08
TMEM260-203ENST00000539559 JMJD1CQ15652 2540 aa14.53□□□□□ -0.08
TMEM260-203ENST00000539559 SETD2Q9BYW2 2564 aaPredicted RBP14.53□□□□□ -0.08
TMEM260-203ENST00000539559 A8MTW9 85 aa14.52□□□□□ -0.08
TMEM260-203ENST00000539559 RS1O15537 224 aa14.52□□□□□ -0.08
TMEM260-203ENST00000539559 PRIMA1Q86XR5 153 aa14.52□□□□□ -0.08
TMEM260-203ENST00000539559 SVIPQ8NHG7 77 aa14.52□□□□□ -0.09
TMEM260-203ENST00000539559 NF1P21359 2839 aa14.52□□□□□ -0.09
TMEM260-203ENST00000539559 NTM-AS1Q6ZSK4 140 aa14.51□□□□□ -0.09
TMEM260-203ENST00000539559 IGLV5-39A0A0G2JS06 123 aa14.51□□□□□ -0.09
TMEM260-203ENST00000539559 INSP01308 110 aa14.51□□□□□ -0.09
TMEM260-203ENST00000539559 DNAJC30Q96LL9 226 aa14.51□□□□□ -0.09
TMEM260-203ENST00000539559 SONP18583 2426 aaKnown RBP14.5□□□□□ -0.09
TMEM260-203ENST00000539559 BEAN1Q3B7T3 259 aa14.5□□□□□ -0.09
TMEM260-203ENST00000539559 HERVK_113P63121 156 aa14.5□□□□□ -0.09
TMEM260-203ENST00000539559 DEFB121Q5J5C9 76 aa14.5□□□□□ -0.09
TMEM260-203ENST00000539559 C11orf44Q8N8P7 122 aa14.5□□□□□ -0.09
TMEM260-203ENST00000539559 COX7A2LO14548 114 aa14.49□□□□□ -0.09
TMEM260-203ENST00000539559 FAM218AQ96MZ4 157 aa14.49□□□□□ -0.09
TMEM260-203ENST00000539559 SMCR5Q8TEV8 140 aa14.49□□□□□ -0.09
TMEM260-203ENST00000539559 Q6ZTI0 123 aa14.49□□□□□ -0.09
TMEM260-203ENST00000539559 DAZ2Q13117 558 aaKnown RBP14.47□□□□□ -0.09
TMEM260-203ENST00000539559 DAZ4Q86SG3 579 aaKnown RBP14.47□□□□□ -0.09
TMEM260-203ENST00000539559 DAZ3Q9NR90 486 aaKnown RBP14.47□□□□□ -0.09
TMEM260-203ENST00000539559 IGKV3OR2-268A0A0C4DH90 116 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms