RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CXCL6P80162 114 aa8.9□□□□□ -0.98
USP3-203ENST00000538686 DGAT2L7PQ6IED9 249 aa8.9□□□□□ -0.98
USP3-203ENST00000538686 MPLKIPQ8TAP9 179 aa8.9□□□□□ -0.98
USP3-203ENST00000538686 IGHV1OR15-1A0A075B7D0 117 aa8.9□□□□□ -0.99
USP3-203ENST00000538686 ATP6V0E1O15342 81 aa8.89□□□□□ -0.99
USP3-203ENST00000538686 C11orf68Q9H3H3 251 aaKnown RBP8.89□□□□□ -0.99
USP3-203ENST00000538686 URB1O60287 2271 aaKnown RBP8.89□□□□□ -0.99
USP3-203ENST00000538686 DEFB1P60022 68 aa8.89□□□□□ -0.99
USP3-203ENST00000538686 LINC00242Q5T6M2 205 aa8.89□□□□□ -0.99
USP3-203ENST00000538686 UNQ9165/PRO28630Q6UXU0 137 aa8.89□□□□□ -0.99
USP3-203ENST00000538686 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.89□□□□□ -0.99
USP3-203ENST00000538686 TMEM105Q8N8V8 129 aa8.89□□□□□ -0.99
USP3-203ENST00000538686 LINC00467Q9BRT7 94 aa8.89□□□□□ -0.99
USP3-203ENST00000538686 BPESC1Q9GZL8 116 aa8.89□□□□□ -0.99
USP3-203ENST00000538686 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.88□□□□□ -0.99
USP3-203ENST00000538686 COX6A2Q02221 97 aa8.88□□□□□ -0.99
USP3-203ENST00000538686 BSPH1Q075Z2 132 aa8.87□□□□□ -0.99
USP3-203ENST00000538686 RETNQ9HD89 108 aa8.87□□□□□ -0.99
USP3-203ENST00000538686 LINC01547P58512 204 aaPredicted RBP8.87□□□□□ -0.99
USP3-203ENST00000538686 IGFL2Q6UWQ7 119 aa8.87□□□□□ -0.99
USP3-203ENST00000538686 IGHV3OR16-12A0A075B7B8 117 aa8.86□□□□□ -0.99
USP3-203ENST00000538686 TRAV10A0A0B4J240 114 aa8.86□□□□□ -0.99
USP3-203ENST00000538686 C22orf34Q6ZV56 151 aa8.86□□□□□ -0.99
USP3-203ENST00000538686 C11orf72Q8NBR9 251 aa8.86□□□□□ -0.99
USP3-203ENST00000538686 LY6G6DO95868 133 aa8.85□□□□□ -0.99
USP3-203ENST00000538686 FAM229BQ4G0N7 80 aa8.85□□□□□ -0.99
USP3-203ENST00000538686 TMEM254Q8TBM7 123 aa8.85□□□□□ -0.99
USP3-203ENST00000538686 LOC110117498A0A087WWA1 95 aa8.85□□□□□ -0.99
USP3-203ENST00000538686 PAX4O43316 350 aa8.85□□□□□ -0.99
USP3-203ENST00000538686 SLPIP03973 132 aa8.85□□□□□ -0.99
USP3-203ENST00000538686 Q96MF0 132 aa8.84□□□□□ -0.99
USP3-203ENST00000538686 TRIOO75962 3097 aa8.84□□□□□ -0.99
USP3-203ENST00000538686 SPTBN5Q9NRC6 3674 aaKnown RBP8.84□□□□□ -0.99
USP3-203ENST00000538686 TMEM89A2RUT3 159 aa8.84□□□□□ -0.99
USP3-203ENST00000538686 FUSP35637 526 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP3-203ENST00000538686 FAM215AQ9Y5M1 114 aa8.84□□□□□ -0.99
USP3-203ENST00000538686 IGHV3-38A0A0C4DH36 116 aa8.83□□□□□ -1
USP3-203ENST00000538686 PDE6GP18545 87 aa8.83□□□□□ -1
USP3-203ENST00000538686 MRPL55Q7Z7F7 128 aaKnown RBP8.83□□□□□ -1
USP3-203ENST00000538686 FREM2Q5SZK8 3169 aa8.82□□□□□ -1
USP3-203ENST00000538686 ZNF561-AS1K7EIQ3 104 aa8.82□□□□□ -1
USP3-203ENST00000538686 DAD1P61803 113 aa8.82□□□□□ -1
USP3-203ENST00000538686 NREPQ16612 68 aa8.82□□□□□ -1
USP3-203ENST00000538686 Q1T7F1 81 aa8.82□□□□□ -1
USP3-203ENST00000538686 FRYLO94915 3013 aa8.82□□□□□ -1
USP3-203ENST00000538686 PRYO14603 147 aa8.82□□□□□ -1
USP3-203ENST00000538686 Q8N814 137 aa8.82□□□□□ -1
USP3-203ENST00000538686 G3V318 75 aa8.81□□□□□ -1
USP3-203ENST00000538686 ATP1A1-AS1Q5TC04 95 aa8.81□□□□□ -1
USP3-203ENST00000538686 Q6ZQT0 140 aa8.81□□□□□ -1
USP3-203ENST00000538686 Q8N3U1 123 aa8.81□□□□□ -1
USP3-203ENST00000538686 RHPN1-AS1Q9BWJ2 59 aa8.81□□□□□ -1
USP3-203ENST00000538686 CCL18P55774 89 aa8.81□□□□□ -1
USP3-203ENST00000538686 HAMPP81172 84 aa8.81□□□□□ -1
USP3-203ENST00000538686 TM2D3Q9BRN9 247 aa8.81□□□□□ -1
USP3-203ENST00000538686 WNK2Q9Y3S1 2297 aa8.8□□□□□ -1
USP3-203ENST00000538686 TRBV6-4A0A1B0GX49 114 aa8.8□□□□□ -1
USP3-203ENST00000538686 Q6ZVQ6 151 aa8.8□□□□□ -1
USP3-203ENST00000538686 FDCSPQ8NFU4 85 aa8.8□□□□□ -1
USP3-203ENST00000538686 ZZEF1O43149 2961 aa8.8□□□□□ -1
USP3-203ENST00000538686 CFAP47Q6ZTR5 3102 aa8.8□□□□□ -1
USP3-203ENST00000538686 H3BQ85 93 aa8.79□□□□□ -1
USP3-203ENST00000538686 LINC00158P58513 81 aa8.79□□□□□ -1
USP3-203ENST00000538686 COX7B2Q8TF08 81 aa8.79□□□□□ -1
USP3-203ENST00000538686 A0A1W2PNU3 283 aaPredicted RBP8.79□□□□□ -1
USP3-203ENST00000538686 PATE3B3GLJ2 98 aa8.79□□□□□ -1
USP3-203ENST00000538686 Q8NA96 180 aa8.79□□□□□ -1
USP3-203ENST00000538686 ABCA4P78363 2273 aa8.78□□□□□ -1
USP3-203ENST00000538686 USMG5Q96IX5 58 aa8.78□□□□□ -1
USP3-203ENST00000538686 PRUNE2Q8WUY3 3088 aa8.78□□□□□ -1
USP3-203ENST00000538686 IGHV3-73A0A0B4J1V6 119 aa8.77□□□□□ -1
USP3-203ENST00000538686 E7EQL1 145 aa8.77□□□□□ -1
USP3-203ENST00000538686 IGHV3-53P01767 116 aa8.77□□□□□ -1
USP3-203ENST00000538686 Q6ZTC4 211 aa8.77□□□□□ -1
USP3-203ENST00000538686 IGKV3-7A0A075B6H7 116 aa8.77□□□□□ -1.01
USP3-203ENST00000538686 LYRM9A8MSI8 78 aa8.77□□□□□ -1.01
USP3-203ENST00000538686 LINC01560Q8TB33 94 aa8.77□□□□□ -1.01
USP3-203ENST00000538686 H3BUA1 57 aa8.76□□□□□ -1.01
USP3-203ENST00000538686 K7EQD1 137 aa8.76□□□□□ -1.01
USP3-203ENST00000538686 PROK1P58294 105 aa8.76□□□□□ -1.01
USP3-203ENST00000538686 Q6ZTI0 123 aa8.76□□□□□ -1.01
USP3-203ENST00000538686 K7EMT4 169 aa8.76□□□□□ -1.01
USP3-203ENST00000538686 BPY2O14599 106 aa8.75□□□□□ -1.01
USP3-203ENST00000538686 C9orf66Q5T8R8 295 aa8.75□□□□□ -1.01
USP3-203ENST00000538686 C6orf223Q8N319 242 aa8.75□□□□□ -1.01
USP3-203ENST00000538686 LYNX1G3V0Z9 82 aa8.74□□□□□ -1.01
USP3-203ENST00000538686 K7EQG2 157 aa8.74□□□□□ -1.01
USP3-203ENST00000538686 LYNX1P0DP58 116 aa8.74□□□□□ -1.01
USP3-203ENST00000538686 C11orf44Q8N8P7 122 aa8.74□□□□□ -1.01
USP3-203ENST00000538686 TRBV10-1A0A0K0K1A3 114 aa8.74□□□□□ -1.01
USP3-203ENST00000538686 hDV103S1A0JD37 113 aa8.74□□□□□ -1.01
USP3-203ENST00000538686 SPINK13Q1W4C9 94 aa8.73□□□□□ -1.01
USP3-203ENST00000538686 NTM-AS1Q6ZSK4 140 aa8.73□□□□□ -1.01
USP3-203ENST00000538686 C5orf56Q8N8D9 126 aa8.73□□□□□ -1.01
USP3-203ENST00000538686 CDC42SE2Q9NRR3 84 aa8.73□□□□□ -1.01
USP3-203ENST00000538686 A0A087WZ39 114 aa8.72□□□□□ -1.01
USP3-203ENST00000538686 TNRC18O15417 2968 aaPredicted RBP8.72□□□□□ -1.01
USP3-203ENST00000538686 KTN1-AS1Q86SY8 53 aa8.71□□□□□ -1.01
USP3-203ENST00000538686 GNLYP22749 145 aa8.71□□□□□ -1.02
USP3-203ENST00000538686 Q6ZSN1 163 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms