RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TNFRSF18Q9Y5U5 241 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 TRBV6-8A0A0A6YYG3 113 aa10.13□□□□□ -0.79
CPSF1-208ENST00000532560 TMEM97Q5BJF2 176 aa10.13□□□□□ -0.79
CPSF1-208ENST00000532560 Q8N3U1 123 aa10.13□□□□□ -0.79
CPSF1-208ENST00000532560 HSBP1L1C9JCN9 74 aa10.12□□□□□ -0.79
CPSF1-208ENST00000532560 HNRNPA3P51991 378 aaKnown RBP10.12□□□□□ -0.79
CPSF1-208ENST00000532560 COL5A1-AS1Q5SY13 56 aa10.12□□□□□ -0.79
CPSF1-208ENST00000532560 PRSS3P2Q8NHM4 247 aa10.12□□□□□ -0.79
CPSF1-208ENST00000532560 CHCHD7Q9BUK0 85 aa10.12□□□□□ -0.79
CPSF1-208ENST00000532560 Q6ZN92 141 aa10.11□□□□□ -0.79
CPSF1-208ENST00000532560 PKD1P98161 4303 aa10.11□□□□□ -0.79
CPSF1-208ENST00000532560 TCAPO15273 167 aa10.1□□□□□ -0.79
CPSF1-208ENST00000532560 PRELID3AQ96N28 172 aa10.1□□□□□ -0.79
CPSF1-208ENST00000532560 PKHD1P08F94 4074 aa10.1□□□□□ -0.79
CPSF1-208ENST00000532560 TRAV26-2A0A0B4J265 109 aa10.09□□□□□ -0.79
CPSF1-208ENST00000532560 LINC01545Q5VT33 79 aa10.09□□□□□ -0.79
CPSF1-208ENST00000532560 NTM-AS1Q6ZSK4 140 aa10.09□□□□□ -0.79
CPSF1-208ENST00000532560 PMCHL2Q9BQD1 86 aa10.09□□□□□ -0.79
CPSF1-208ENST00000532560 HERC2O95714 4834 aa10.08□□□□□ -0.8
CPSF1-208ENST00000532560 TRBV25-1A0A075B6N4 114 aa10.08□□□□□ -0.8
CPSF1-208ENST00000532560 A0A087WX48 190 aa10.08□□□□□ -0.8
CPSF1-208ENST00000532560 LINC01546A6NGU7 62 aa10.08□□□□□ -0.8
CPSF1-208ENST00000532560 MRPL51Q4U2R6 128 aaKnown RBP10.08□□□□□ -0.8
CPSF1-208ENST00000532560 Q9HAA7 133 aa10.08□□□□□ -0.8
CPSF1-208ENST00000532560 TRAV8-3A0A0A6YYJ7 113 aa10.07□□□□□ -0.8
CPSF1-208ENST00000532560 D6R8Y8 96 aa10.07□□□□□ -0.8
CPSF1-208ENST00000532560 CKS2P33552 79 aa10.07□□□□□ -0.8
CPSF1-208ENST00000532560 CHCHD5Q9BSY4 110 aa10.07□□□□□ -0.8
CPSF1-208ENST00000532560 HBDP02042 147 aa10.06□□□□□ -0.8
CPSF1-208ENST00000532560 AMN1Q8IY45 258 aa10.06□□□□□ -0.8
CPSF1-208ENST00000532560 MAP1LC3AQ9H492 121 aa10.06□□□□□ -0.8
CPSF1-208ENST00000532560 NXT2Q9NPJ8 142 aaKnown RBP10.06□□□□□ -0.8
CPSF1-208ENST00000532560 PCLOQ9Y6V0 5065 aa10.05□□□□□ -0.8
CPSF1-208ENST00000532560 A0A087WTM6 91 aa10.05□□□□□ -0.8
CPSF1-208ENST00000532560 TMEM262E9PQX1 116 aa10.05□□□□□ -0.8
CPSF1-208ENST00000532560 PSCAO43653 123 aa10.05□□□□□ -0.8
CPSF1-208ENST00000532560 MPV17L2Q567V2 206 aa10.05□□□□□ -0.8
CPSF1-208ENST00000532560 RPL39LQ96EH5 51 aaKnown RBP10.05□□□□□ -0.8
CPSF1-208ENST00000532560 RNF185Q96GF1 192 aa10.05□□□□□ -0.8
CPSF1-208ENST00000532560 TM2D2Q9BX73 214 aa10.05□□□□□ -0.8
CPSF1-208ENST00000532560 KLK12Q9UKR0 248 aa10.05□□□□□ -0.8
CPSF1-208ENST00000532560 DNAH11Q96DT5 4516 aa10.05□□□□□ -0.8
CPSF1-208ENST00000532560 PRSS47A8MTI9 375 aa10.04□□□□□ -0.8
CPSF1-208ENST00000532560 C16orf90A8MZG2 172 aa10.04□□□□□ -0.8
CPSF1-208ENST00000532560 IFI27P40305 119 aaPredicted RBP10.04□□□□□ -0.8
CPSF1-208ENST00000532560 KRTAP10-2P60368 255 aa10.04□□□□□ -0.8
CPSF1-208ENST00000532560 SLC25A34Q6PIV7 304 aa10.04□□□□□ -0.8
CPSF1-208ENST00000532560 MRAP2Q96G30 205 aa10.04□□□□□ -0.8
CPSF1-208ENST00000532560 TRBV6-5A0A0K0K1A5 114 aa10.03□□□□□ -0.8
CPSF1-208ENST00000532560 SDHAF1A6NFY7 115 aa10.03□□□□□ -0.8
CPSF1-208ENST00000532560 COTL1Q14019 142 aa10.03□□□□□ -0.8
CPSF1-208ENST00000532560 ATOH7Q8N100 152 aa10.03□□□□□ -0.8
CPSF1-208ENST00000532560 RMI2Q96E14 147 aa10.03□□□□□ -0.8
CPSF1-208ENST00000532560 TMEM243Q9BU79 118 aa10.03□□□□□ -0.8
CPSF1-208ENST00000532560 COX11Q9Y6N1 276 aa10.03□□□□□ -0.8
CPSF1-208ENST00000532560 LRCOL1A6NCL2 159 aa10.02□□□□□ -0.81
CPSF1-208ENST00000532560 RBX1P62877 108 aa10.02□□□□□ -0.81
CPSF1-208ENST00000532560 GAGE6Q13070 117 aa10.02□□□□□ -0.81
CPSF1-208ENST00000532560 DYNC1H1Q14204 4646 aaKnown RBP10.02□□□□□ -0.81
CPSF1-208ENST00000532560 GAS8-AS1O95177 125 aa10.01□□□□□ -0.81
CPSF1-208ENST00000532560 NCR2O95944 276 aa10.01□□□□□ -0.81
CPSF1-208ENST00000532560 ANGP03950 147 aaKnown RBP10.01□□□□□ -0.81
CPSF1-208ENST00000532560 LINC00173Q6ZV60 143 aa10.01□□□□□ -0.81
CPSF1-208ENST00000532560 UBE2WQ96B02 151 aa10.01□□□□□ -0.81
CPSF1-208ENST00000532560 K7EMI3 77 aa10□□□□□ -0.81
CPSF1-208ENST00000532560 DLEU1O43261 78 aa10□□□□□ -0.81
CPSF1-208ENST00000532560 NPYP01303 97 aa10□□□□□ -0.81
CPSF1-208ENST00000532560 CRPP02741 224 aa10□□□□□ -0.81
CPSF1-208ENST00000532560 FCER1GP30273 86 aa10□□□□□ -0.81
CPSF1-208ENST00000532560 BATFQ16520 125 aa10□□□□□ -0.81
CPSF1-208ENST00000532560 Q8N8P6 123 aa10□□□□□ -0.81
CPSF1-208ENST00000532560 ORAOV1Q8WV07 137 aa10□□□□□ -0.81
CPSF1-208ENST00000532560 PGPEP1Q9NXJ5 209 aa10□□□□□ -0.81
CPSF1-208ENST00000532560 A0A096LNJ9 63 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 LOC389332A0A1B0GUA5 103 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 A0A1B0GUV1 79 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 I3L3M4 83 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 TNFRSF6BO95407 300 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 PPP1R17O96001 155 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 ZNF25P17030 456 aaPredicted RBP9.99□□□□□ -0.81
CPSF1-208ENST00000532560 MAJINQ3KP22 176 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 ENHOQ6UWT2 76 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 DEFB104AQ8WTQ1 72 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 IFI27L1Q96BM0 104 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 PRR34Q9NV39 138 aa9.99□□□□□ -0.81
CPSF1-208ENST00000532560 RYR1P21817 5038 aa9.98□□□□□ -0.81
CPSF1-208ENST00000532560 IGKV2D-24A0A075B6R9 120 aa9.98□□□□□ -0.81
CPSF1-208ENST00000532560 UBE2L6O14933 153 aa9.98□□□□□ -0.81
CPSF1-208ENST00000532560 COX8AP10176 69 aa9.98□□□□□ -0.81
CPSF1-208ENST00000532560 MIAQ16674 131 aa9.98□□□□□ -0.81
CPSF1-208ENST00000532560 NRACQ8N912 160 aa9.98□□□□□ -0.81
CPSF1-208ENST00000532560 TRBV27A0A0K0K1C4 114 aa9.97□□□□□ -0.81
CPSF1-208ENST00000532560 SMKR1H3BMG3 65 aa9.97□□□□□ -0.81
CPSF1-208ENST00000532560 ATP5LO75964 103 aa9.97□□□□□ -0.81
CPSF1-208ENST00000532560 POLR2KP53803 58 aaKnown RBP9.97□□□□□ -0.81
CPSF1-208ENST00000532560 Q8N814 137 aa9.97□□□□□ -0.81
CPSF1-208ENST00000532560 MAPKAPK5-AS1Q8N8E1 139 aa9.97□□□□□ -0.81
CPSF1-208ENST00000532560 C20orf203Q8NBC4 194 aa9.97□□□□□ -0.81
CPSF1-208ENST00000532560 NTN5Q8WTR8 489 aaPredicted RBP9.97□□□□□ -0.81
CPSF1-208ENST00000532560 C1orf43Q9BWL3 253 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 148.2 ms