RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 RNF11Q9Y3C5 154 aa1.06□□□□□ -2.24
CD44-233ENST00000531141 TMSB15BA0A087X1C1 80 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 A0A1B0GW64 132 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 OR51F1A6NGY5 319 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 LINC00587B1AMM8 73 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 F8W036 122 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 H3BMG7 143 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 H3BSH0 61 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 MRPL33O75394 65 aaKnown RBP1.05□□□□□ -2.24
CD44-233ENST00000531141 IFNGP01579 166 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 CXCL1P09341 107 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 S100PP25815 95 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 EIF2B2P49770 351 aaKnown RBP1.05□□□□□ -2.24
CD44-233ENST00000531141 RRAS2P62070 204 aaPredicted RBP1.05□□□□□ -2.24
CD44-233ENST00000531141 DYNLT1P63172 113 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 MRPS36P82909 103 aaKnown RBP1.05□□□□□ -2.24
CD44-233ENST00000531141 QRFPP83859 136 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 SPANXN5Q5MJ07 72 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 GLYATL3Q5SZD4 288 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 C4orf22Q6V702 233 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 C7orf65Q6ZTY9 151 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 AAED1Q7RTV5 226 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 OR10AC1Q8NH08 325 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 DEFB104AQ8WTQ1 72 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 ARL11Q969Q4 196 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 PRELID3AQ96N28 172 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 ZNF714Q96N38 554 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 TCEAL7Q9BRU2 100 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 SNRNP25Q9BV90 132 aaKnown RBP1.05□□□□□ -2.24
CD44-233ENST00000531141 SMIM3Q9BZL3 60 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 LINC00470Q9BZP3 86 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 CYSTM1Q9H1C7 97 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 DSPPQ9NZW4 1301 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 TANC2Q9HCD6 1990 aa1.05□□□□□ -2.24
CD44-233ENST00000531141 SSPOA2VEC9 5147 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 MEIKINA0A087WXM9 373 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 A0A1B0GV90 55 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 ODAMA1E959 279 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 OR2T8A6NH00 312 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 C17orf112F2Z3M2 114 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 CCL22O00626 93 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 UQCRQO14949 82 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 RER1O15258 196 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 LYRM1O43325 122 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 OR1I1O60431 355 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 TIMM17BO60830 172 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 CLPSP04118 112 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 BAALC-AS2P0C853 105 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 ZNF705BP0CI00 300 aaPredicted RBP1.04□□□□□ -2.24
CD44-233ENST00000531141 KDELR1P24390 212 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 COPZ1P61923 177 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 RPS25P62851 125 aaKnown RBP1.04□□□□□ -2.24
CD44-233ENST00000531141 BLCAPP62952 87 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 EMX2Q04743 252 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 KLRD1Q13241 179 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 ASB16-AS1Q495Z4 193 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 C1orf134Q5TEV5 83 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 FAM27BQ5VT28 67 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 TMEM244Q5VVB8 128 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 HAGHLQ6PII5 290 aaPredicted RBP1.04□□□□□ -2.24
CD44-233ENST00000531141 LCN15Q6UWW0 184 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 PATE2Q6UY27 113 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 ZNF826PQ6ZT77 177 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 CTAGE3PQ8IX95 158 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 OR5H6Q8NGV6 325 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 DIRC1Q969H9 104 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 BCL2L10Q9HD36 194 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 C14orf132Q9NPU4 83 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 TAS2R4Q9NYW5 299 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 APLNQ9ULZ1 77 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 PKHD1L1Q86WI1 4243 aa1.04□□□□□ -2.24
CD44-233ENST00000531141 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.03□□□□□ -2.24
CD44-233ENST00000531141 HMSDA8MTL9 139 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 ZNF727A8MUV8 499 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 NPFFO15130 113 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 YPEL1O60688 119 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 PGLYRP1O75594 196 aaPredicted RBP1.03□□□□□ -2.24
CD44-233ENST00000531141 PROSCO94903 275 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 CTSDP07339 412 aaPredicted RBP1.03□□□□□ -2.24
CD44-233ENST00000531141 SMIM6P0DI80 62 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 SAA1P0DJI8 122 aaPredicted RBP1.03□□□□□ -2.24
CD44-233ENST00000531141 MIFP14174 115 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 HIST1H1BP16401 226 aaKnown RBP1.03□□□□□ -2.24
CD44-233ENST00000531141 TMEM258P61165 79 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 MRPS10P82664 201 aaKnown RBP1.03□□□□□ -2.24
CD44-233ENST00000531141 NNATQ16517 81 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 ESRGQ1W209 222 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 HSD17B12Q53GQ0 312 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 NCBP2-AS2Q69YL0 99 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 C10orf99Q6UWK7 81 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 SOSTDC1Q6X4U4 206 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 IDO2Q6ZQW0 420 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 ATOH7Q8N100 152 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 LINC00471Q8N535 108 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 FAM216BQ8N7L0 139 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 OR8B3Q8NGG8 313 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 BRK1Q8WUW1 75 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 AQP3Q92482 292 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 TP53RKQ96S44 253 aa1.03□□□□□ -2.24
CD44-233ENST00000531141 GGACTQ9BVM4 153 aa1.03□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms