RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 TMEM18Q96B42 140 aa7.98□□□□□ -1.13
USH1C-208ENST00000529563 TMEM101Q96IK0 257 aa7.98□□□□□ -1.13
USH1C-208ENST00000529563 PRELID3AQ96N28 172 aa7.98□□□□□ -1.13
USH1C-208ENST00000529563 C20orf78Q9BR46 151 aa7.98□□□□□ -1.13
USH1C-208ENST00000529563 CHAC1Q9BUX1 264 aa7.98□□□□□ -1.13
USH1C-208ENST00000529563 TNFRSF6BO95407 300 aa7.97□□□□□ -1.13
USH1C-208ENST00000529563 RPS10P46783 165 aaKnown RBP7.97□□□□□ -1.13
USH1C-208ENST00000529563 DGAT2L7PQ6IED9 249 aa7.97□□□□□ -1.13
USH1C-208ENST00000529563 RNASEKQ6P5S7 137 aaKnown RBP7.97□□□□□ -1.13
USH1C-208ENST00000529563 MAP1LC3AQ9H492 121 aa7.97□□□□□ -1.13
USH1C-208ENST00000529563 PHOX2AO14813 284 aa7.96□□□□□ -1.14
USH1C-208ENST00000529563 MT-ND6P03923 174 aa7.96□□□□□ -1.14
USH1C-208ENST00000529563 SERTAD4-AS1Q5TG53 156 aa7.96□□□□□ -1.14
USH1C-208ENST00000529563 ATRAIDQ6UW56 229 aa7.96□□□□□ -1.14
USH1C-208ENST00000529563 NTM-AS1Q6ZSK4 140 aa7.96□□□□□ -1.14
USH1C-208ENST00000529563 LAMTOR2Q9Y2Q5 125 aa7.96□□□□□ -1.14
USH1C-208ENST00000529563 LOC389332A0A1B0GUA5 103 aa7.95□□□□□ -1.14
USH1C-208ENST00000529563 FABP9Q0Z7S8 132 aa7.95□□□□□ -1.14
USH1C-208ENST00000529563 CIRBP-AS1Q8TBR5 109 aa7.95□□□□□ -1.14
USH1C-208ENST00000529563 GNB1LQ9BYB4 327 aa7.95□□□□□ -1.14
USH1C-208ENST00000529563 SMCO4Q9NRQ5 59 aa7.95□□□□□ -1.14
USH1C-208ENST00000529563 TRBV24-1A0A075B6N3 115 aa7.94□□□□□ -1.14
USH1C-208ENST00000529563 TRBV27A0A0K0K1C4 114 aa7.94□□□□□ -1.14
USH1C-208ENST00000529563 H7C423 109 aa7.94□□□□□ -1.14
USH1C-208ENST00000529563 GAS8-AS1O95177 125 aa7.94□□□□□ -1.14
USH1C-208ENST00000529563 NPYP01303 97 aa7.94□□□□□ -1.14
USH1C-208ENST00000529563 POLR2KP53803 58 aaKnown RBP7.94□□□□□ -1.14
USH1C-208ENST00000529563 RBX1P62877 108 aa7.94□□□□□ -1.14
USH1C-208ENST00000529563 MPV17L2Q567V2 206 aa7.94□□□□□ -1.14
USH1C-208ENST00000529563 NRACQ8N912 160 aa7.94□□□□□ -1.14
USH1C-208ENST00000529563 SMIM2Q9BVW6 85 aa7.94□□□□□ -1.14
USH1C-208ENST00000529563 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.93□□□□□ -1.14
USH1C-208ENST00000529563 IGKV2-29A2NJV5 120 aaPredicted RBP7.93□□□□□ -1.14
USH1C-208ENST00000529563 RPL37AP61513 92 aaKnown RBP7.93□□□□□ -1.14
USH1C-208ENST00000529563 TRAPPC1Q9Y5R8 145 aa7.93□□□□□ -1.14
USH1C-208ENST00000529563 TGIF2-C20orf24A0A0A6YYL0 155 aa7.92□□□□□ -1.14
USH1C-208ENST00000529563 IGKV3OR2-268A0A0C4DH90 116 aa7.92□□□□□ -1.14
USH1C-208ENST00000529563 OXTP01178 125 aa7.92□□□□□ -1.14
USH1C-208ENST00000529563 TSHBP01222 138 aa7.92□□□□□ -1.14
USH1C-208ENST00000529563 KIAA1644Q3SXP7 199 aa7.92□□□□□ -1.14
USH1C-208ENST00000529563 CLPSL2Q6UWE3 100 aa7.92□□□□□ -1.14
USH1C-208ENST00000529563 LINC00269Q8N2A0 174 aa7.92□□□□□ -1.14
USH1C-208ENST00000529563 OR5A1Q8NGJ0 315 aa7.92□□□□□ -1.14
USH1C-208ENST00000529563 PRSS3P2Q8NHM4 247 aa7.92□□□□□ -1.14
USH1C-208ENST00000529563 MRPL18Q9H0U6 180 aaKnown RBP7.92□□□□□ -1.14
USH1C-208ENST00000529563 USP17L23D6RBM5 183 aa7.91□□□□□ -1.14
USH1C-208ENST00000529563 FGF6P10767 208 aa7.91□□□□□ -1.14
USH1C-208ENST00000529563 ZNF25P17030 456 aaPredicted RBP7.91□□□□□ -1.14
USH1C-208ENST00000529563 G0S2P27469 103 aa7.91□□□□□ -1.14
USH1C-208ENST00000529563 RPL32P62910 135 aaKnown RBP7.91□□□□□ -1.14
USH1C-208ENST00000529563 MIAQ16674 131 aa7.91□□□□□ -1.14
USH1C-208ENST00000529563 NXT2Q9NPJ8 142 aaKnown RBP7.91□□□□□ -1.14
USH1C-208ENST00000529563 DNAH8Q96JB1 4490 aa7.9□□□□□ -1.14
USH1C-208ENST00000529563 A0A1B0GUV1 79 aa7.9□□□□□ -1.14
USH1C-208ENST00000529563 REG3AQ06141 175 aa7.9□□□□□ -1.14
USH1C-208ENST00000529563 ENHOQ6UWT2 76 aa7.9□□□□□ -1.14
USH1C-208ENST00000529563 PLA2G2DQ9UNK4 145 aa7.9□□□□□ -1.14
USH1C-208ENST00000529563 ORMDL2Q53FV1 153 aa7.89□□□□□ -1.15
USH1C-208ENST00000529563 Q8N8P6 123 aa7.89□□□□□ -1.15
USH1C-208ENST00000529563 DPH3Q96FX2 82 aa7.89□□□□□ -1.15
USH1C-208ENST00000529563 TRAV8-4A0A0B4J246 113 aa7.88□□□□□ -1.15
USH1C-208ENST00000529563 FA2HQ7L5A8 372 aa7.88□□□□□ -1.15
USH1C-208ENST00000529563 CBLN2Q8IUK8 224 aa7.88□□□□□ -1.15
USH1C-208ENST00000529563 IGLV4-60A0A075B6I1 120 aa7.87□□□□□ -1.15
USH1C-208ENST00000529563 IGLV10-54A0A075B6I4 117 aa7.87□□□□□ -1.15
USH1C-208ENST00000529563 K7EMI3 77 aa7.87□□□□□ -1.15
USH1C-208ENST00000529563 ESDP10768 282 aa7.87□□□□□ -1.15
USH1C-208ENST00000529563 IFI27P40305 119 aaPredicted RBP7.87□□□□□ -1.15
USH1C-208ENST00000529563 SS18Q15532 418 aa7.87□□□□□ -1.15
USH1C-208ENST00000529563 C20orf203Q8NBC4 194 aa7.87□□□□□ -1.15
USH1C-208ENST00000529563 PRSS1P07477 247 aa7.86□□□□□ -1.15
USH1C-208ENST00000529563 Q6ZN92 141 aa7.86□□□□□ -1.15
USH1C-208ENST00000529563 ZNF664Q8N3J9 261 aa7.86□□□□□ -1.15
USH1C-208ENST00000529563 ALKBH7Q9BT30 221 aaPredicted RBP7.86□□□□□ -1.15
USH1C-208ENST00000529563 AP5S1Q9NUS5 200 aa7.86□□□□□ -1.15
USH1C-208ENST00000529563 CYSLTR1Q9Y271 337 aa7.86□□□□□ -1.15
USH1C-208ENST00000529563 PRSS47A8MTI9 375 aa7.85□□□□□ -1.15
USH1C-208ENST00000529563 KRTAP10-4P60372 401 aaPredicted RBP7.85□□□□□ -1.15
USH1C-208ENST00000529563 RAB5BP61020 215 aa7.85□□□□□ -1.15
USH1C-208ENST00000529563 MRPL52Q86TS9 123 aaKnown RBP7.85□□□□□ -1.15
USH1C-208ENST00000529563 SPANXA1Q9NS26 97 aa7.85□□□□□ -1.15
USH1C-208ENST00000529563 hDV102S1A0JD36 115 aa7.84□□□□□ -1.15
USH1C-208ENST00000529563 RPL39P62891 51 aaKnown RBP7.84□□□□□ -1.15
USH1C-208ENST00000529563 C9orf163Q8N9P6 203 aa7.84□□□□□ -1.15
USH1C-208ENST00000529563 TIMM21Q9BVV7 248 aa7.84□□□□□ -1.15
USH1C-208ENST00000529563 PRR34Q9NV39 138 aa7.84□□□□□ -1.15
USH1C-208ENST00000529563 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.83□□□□□ -1.16
USH1C-208ENST00000529563 LINC01549A6NIU2 74 aa7.83□□□□□ -1.16
USH1C-208ENST00000529563 PAPPA-AS1Q5QFB9 102 aa7.83□□□□□ -1.16
USH1C-208ENST00000529563 CDC42SE2Q9NRR3 84 aa7.83□□□□□ -1.16
USH1C-208ENST00000529563 UBE2D4Q9Y2X8 147 aa7.83□□□□□ -1.16
USH1C-208ENST00000529563 CSDC2Q9Y534 153 aaKnown RBP7.83□□□□□ -1.16
USH1C-208ENST00000529563 TRAV13-1A0A0B4J241 112 aa7.82□□□□□ -1.16
USH1C-208ENST00000529563 S100A1P23297 94 aa7.82□□□□□ -1.16
USH1C-208ENST00000529563 CFAP161Q6P656 301 aa7.82□□□□□ -1.16
USH1C-208ENST00000529563 C2orf66Q6UXQ4 117 aa7.82□□□□□ -1.16
USH1C-208ENST00000529563 C2orf88Q9BSF0 95 aa7.82□□□□□ -1.16
USH1C-208ENST00000529563 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.82□□□□□ -1.16
USH1C-208ENST00000529563 IGHV3-64A0A075B6Q5 118 aa7.81□□□□□ -1.16
USH1C-208ENST00000529563 GAGE12HA6NDE8 117 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms