RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 K7EMI3 77 aa9.35□□□□□ -0.91
USF1-209ENST00000529476 TNP2Q05952 138 aa9.35□□□□□ -0.91
USF1-209ENST00000529476 ORMDL2Q53FV1 153 aa9.35□□□□□ -0.91
USF1-209ENST00000529476 LINC00336Q6ZUF6 198 aa9.35□□□□□ -0.91
USF1-209ENST00000529476 IGKV2D-24A0A075B6R9 120 aa9.34□□□□□ -0.91
USF1-209ENST00000529476 LINC01546A6NGU7 62 aa9.34□□□□□ -0.91
USF1-209ENST00000529476 DGAT2L7PQ6IED9 249 aa9.34□□□□□ -0.91
USF1-209ENST00000529476 FA2HQ7L5A8 372 aa9.34□□□□□ -0.91
USF1-209ENST00000529476 TIMM21Q9BVV7 248 aa9.34□□□□□ -0.91
USF1-209ENST00000529476 CDC42SE2Q9NRR3 84 aa9.34□□□□□ -0.91
USF1-209ENST00000529476 IGKV3OR2-268A0A0C4DH90 116 aa9.33□□□□□ -0.92
USF1-209ENST00000529476 SMAGPQ0VAQ4 97 aa9.33□□□□□ -0.92
USF1-209ENST00000529476 MIAQ16674 131 aa9.33□□□□□ -0.92
USF1-209ENST00000529476 C2orf66Q6UXQ4 117 aa9.33□□□□□ -0.92
USF1-209ENST00000529476 ZNF664Q8N3J9 261 aa9.33□□□□□ -0.92
USF1-209ENST00000529476 RMI2Q96E14 147 aa9.33□□□□□ -0.92
USF1-209ENST00000529476 URB1-AS1Q96HZ7 61 aa9.33□□□□□ -0.92
USF1-209ENST00000529476 TM2D2Q9BX73 214 aa9.33□□□□□ -0.92
USF1-209ENST00000529476 CSDC2Q9Y534 153 aaKnown RBP9.33□□□□□ -0.92
USF1-209ENST00000529476 IGLV10-54A0A075B6I4 117 aa9.32□□□□□ -0.92
USF1-209ENST00000529476 PSCAO43653 123 aa9.32□□□□□ -0.92
USF1-209ENST00000529476 RNASE13Q5GAN3 156 aaKnown RBP9.32□□□□□ -0.92
USF1-209ENST00000529476 Q6ZUT4 128 aa9.32□□□□□ -0.92
USF1-209ENST00000529476 FAM104AQ969W3 186 aa9.32□□□□□ -0.92
USF1-209ENST00000529476 OPRPNQ99935 248 aaPredicted RBP9.32□□□□□ -0.92
USF1-209ENST00000529476 C1orf43Q9BWL3 253 aa9.32□□□□□ -0.92
USF1-209ENST00000529476 SPANXA1Q9NS26 97 aa9.32□□□□□ -0.92
USF1-209ENST00000529476 CYSLTR1Q9Y271 337 aa9.32□□□□□ -0.92
USF1-209ENST00000529476 DNAH17Q9UFH2 4485 aa9.31□□□□□ -0.92
USF1-209ENST00000529476 LINC00614P0C842 121 aa9.31□□□□□ -0.92
USF1-209ENST00000529476 MAPKAPK5-AS1Q8N8E1 139 aa9.31□□□□□ -0.92
USF1-209ENST00000529476 FAT2Q9NYQ8 4349 aa9.3□□□□□ -0.92
USF1-209ENST00000529476 KRTAP26-1Q6PEX3 210 aa9.3□□□□□ -0.92
USF1-209ENST00000529476 AP5S1Q9NUS5 200 aa9.3□□□□□ -0.92
USF1-209ENST00000529476 PYGO1Q9Y3Y4 419 aa9.3□□□□□ -0.92
USF1-209ENST00000529476 COX11Q9Y6N1 276 aa9.3□□□□□ -0.92
USF1-209ENST00000529476 PKHD1P08F94 4074 aa9.3□□□□□ -0.92
USF1-209ENST00000529476 DNAH11Q96DT5 4516 aa9.29□□□□□ -0.92
USF1-209ENST00000529476 TRAV8-4A0A0B4J246 113 aa9.29□□□□□ -0.92
USF1-209ENST00000529476 MRPS36P82909 103 aaKnown RBP9.29□□□□□ -0.92
USF1-209ENST00000529476 TOMM6Q96B49 74 aa9.29□□□□□ -0.92
USF1-209ENST00000529476 IGLV4-3A0A075B6K6 122 aa9.28□□□□□ -0.92
USF1-209ENST00000529476 A0A087WTM6 91 aa9.28□□□□□ -0.92
USF1-209ENST00000529476 LINC00959A0A1B0GUT2 108 aa9.28□□□□□ -0.92
USF1-209ENST00000529476 A0A1B0GVY2 172 aa9.28□□□□□ -0.92
USF1-209ENST00000529476 LRCOL1A6NCL2 159 aa9.28□□□□□ -0.92
USF1-209ENST00000529476 G0S2P27469 103 aa9.28□□□□□ -0.92
USF1-209ENST00000529476 RAB5BP61020 215 aa9.28□□□□□ -0.92
USF1-209ENST00000529476 BAALCQ8WXS3 180 aa9.28□□□□□ -0.92
USF1-209ENST00000529476 A0A096LNJ9 63 aa9.27□□□□□ -0.93
USF1-209ENST00000529476 IGIPA6NJ69 53 aa9.27□□□□□ -0.93
USF1-209ENST00000529476 LECT2O14960 151 aa9.27□□□□□ -0.93
USF1-209ENST00000529476 WFDC2Q14508 124 aa9.27□□□□□ -0.93
USF1-209ENST00000529476 PMCHL1Q16048 86 aa9.27□□□□□ -0.93
USF1-209ENST00000529476 BAGE3Q86Y29 109 aa9.27□□□□□ -0.93
USF1-209ENST00000529476 CHCHD10Q8WYQ3 142 aaPredicted RBP9.27□□□□□ -0.93
USF1-209ENST00000529476 TRAV13-1A0A0B4J241 112 aa9.26□□□□□ -0.93
USF1-209ENST00000529476 GAGE12HA6NDE8 117 aa9.26□□□□□ -0.93
USF1-209ENST00000529476 SS18Q15532 418 aa9.26□□□□□ -0.93
USF1-209ENST00000529476 CHCHD1Q96BP2 118 aaKnown RBP9.26□□□□□ -0.93
USF1-209ENST00000529476 TMEM141Q96I45 108 aa9.26□□□□□ -0.93
USF1-209ENST00000529476 SCGB3A1Q96QR1 104 aa9.26□□□□□ -0.93
USF1-209ENST00000529476 CCL25O15444 150 aa9.25□□□□□ -0.93
USF1-209ENST00000529476 XCL1P47992 114 aa9.25□□□□□ -0.93
USF1-209ENST00000529476 ZC2HC1BQ5TFG8 222 aa9.25□□□□□ -0.93
USF1-209ENST00000529476 ERASQ7Z444 233 aa9.25□□□□□ -0.93
USF1-209ENST00000529476 TIMM17AQ99595 171 aa9.25□□□□□ -0.93
USF1-209ENST00000529476 IFITM10A6NMD0 228 aa9.24□□□□□ -0.93
USF1-209ENST00000529476 HBDP02042 147 aa9.24□□□□□ -0.93
USF1-209ENST00000529476 NPSP0C0P6 89 aa9.24□□□□□ -0.93
USF1-209ENST00000529476 LINC00310P59036 64 aa9.24□□□□□ -0.93
USF1-209ENST00000529476 LINC00173Q6ZV60 143 aa9.24□□□□□ -0.93
USF1-209ENST00000529476 LINC01549A6NIU2 74 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 C1orf196B1AJZ1 125 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 EREGO14944 169 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST1H2BKO60814 126 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 SERF1AO75920 110 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST1H2BJP06899 126 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST1H2BOP23527 126 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST1H2BBP33778 126 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST1H2BDP58876 126 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST1H2BCP62807 126 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 FOXI1Q12951 378 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST2H2BEQ16778 126 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.23□□□□□ -0.93
USF1-209ENST00000529476 Q6ZN92 141 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 TEX43Q6ZNM6 134 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST1H2BHQ93079 126 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 AMELXQ99217 191 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST1H2BNQ99877 126 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 HIST1H2BMQ99879 126 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 VCX2Q9H322 139 aa9.23□□□□□ -0.93
USF1-209ENST00000529476 USP17L23D6RBM5 183 aa9.22□□□□□ -0.93
USF1-209ENST00000529476 HSBP1O75506 76 aa9.22□□□□□ -0.93
USF1-209ENST00000529476 FUSP35637 526 aaKnown RBP eCLIP9.22□□□□□ -0.93
USF1-209ENST00000529476 KRTAP10-2P60368 255 aa9.22□□□□□ -0.93
USF1-209ENST00000529476 PDZD11Q5EBL8 140 aa9.22□□□□□ -0.93
USF1-209ENST00000529476 SPATA12Q7Z6I5 190 aa9.22□□□□□ -0.93
USF1-209ENST00000529476 Q8N814 137 aa9.22□□□□□ -0.93
USF1-209ENST00000529476 HERC1Q15751 4861 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms