RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 LY6EQ16553 131 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 AAED1Q7RTV5 226 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 Q86TA4 180 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 RPS19BP1Q86WX3 136 aaKnown RBP4.21□□□□□ -1.74
LSM1-202ENST00000520286 TEX29Q8N6K0 151 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 OR1L8Q8NGR8 309 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 PROK2Q9HC23 129 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 STAB1Q9NY15 2570 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 COL6A5A8TX70 2615 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 FN1P02751 2386 aaKnown RBP4.2□□□□□ -1.74
LSM1-202ENST00000520286 JMJD1CQ15652 2540 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 DIDO1Q9BTC0 2240 aaKnown RBP4.2□□□□□ -1.74
LSM1-202ENST00000520286 CCDC179H3BU77 68 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 RNASE2P10153 161 aaKnown RBP4.2□□□□□ -1.74
LSM1-202ENST00000520286 IFI27P40305 119 aaPredicted RBP4.2□□□□□ -1.74
LSM1-202ENST00000520286 GNG5P63218 68 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 PRCDQ00LT1 54 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 SPRNQ5BIV9 151 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 KPRPQ5T749 579 aaPredicted RBP4.2□□□□□ -1.74
LSM1-202ENST00000520286 AMTNQ6UX39 209 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 PATE2Q6UY27 113 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 RNF182Q8N6D2 247 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 RTL8AQ9BWD3 113 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 TMEM126AQ9H061 195 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 PRNDQ9UKY0 176 aa4.2□□□□□ -1.74
LSM1-202ENST00000520286 TRAV5A0A0B4J249 113 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 C8orf87E5RJ46 101 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 CNIH1O95406 144 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 ORM1P02763 201 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 TCRAP04437 139 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 ARMS2P0C7Q2 107 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 PYYP10082 97 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 UBE2D1P51668 147 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 RMI2Q96E14 147 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 MAP1LC3AQ9H492 121 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 ENY2Q9NPA8 101 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 TANC2Q9HCD6 1990 aa4.19□□□□□ -1.74
LSM1-202ENST00000520286 USF3Q68DE3 2245 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 ZNF407Q9C0G0 2248 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 IGKV1D-37A0A075B6S9 117 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 DPM2O94777 84 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 IGKCP01834 107 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 DEFB113Q30KQ7 82 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 TMEM78Q5T7P6 136 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 LYRM7Q5U5X0 104 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 C10orf113Q5VZT2 155 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 SPINT4Q6UDR6 99 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 PTH2Q96A98 100 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 DNAJC30Q96LL9 226 aa4.18□□□□□ -1.74
LSM1-202ENST00000520286 D6R8Y8 96 aa4.17□□□□□ -1.74
LSM1-202ENST00000520286 CCL3P10147 92 aa4.17□□□□□ -1.74
LSM1-202ENST00000520286 IFITM1P13164 125 aa4.17□□□□□ -1.74
LSM1-202ENST00000520286 FCER1GP30273 86 aa4.17□□□□□ -1.74
LSM1-202ENST00000520286 MYOZ3Q8TDC0 251 aa4.17□□□□□ -1.74
LSM1-202ENST00000520286 TTTY13Q9BZ97 58 aa4.17□□□□□ -1.74
LSM1-202ENST00000520286 OTORQ9NRC9 128 aa4.17□□□□□ -1.74
LSM1-202ENST00000520286 RTTNQ86VV8 2226 aa4.17□□□□□ -1.74
LSM1-202ENST00000520286 ZNF469Q96JG9 3925 aaPredicted RBP4.16□□□□□ -1.74
LSM1-202ENST00000520286 TRBV20-1A0A075B6N2 111 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 MYMXA0A1B0GTQ4 84 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 IQCF6A8MYZ5 107 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 NPYP01303 97 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 CGB3P0DN86 165 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 CGB7P0DN87 165 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 CNTFRP26992 372 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 MRPL51Q4U2R6 128 aaKnown RBP4.16□□□□□ -1.74
LSM1-202ENST00000520286 AMN1Q8IY45 258 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 ANKRD29Q8N6D5 301 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 TMEM75Q8N9X5 138 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 TMEM14CQ9P0S9 112 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 ABCA4P78363 2273 aa4.16□□□□□ -1.74
LSM1-202ENST00000520286 ATRQ13535 2644 aa4.15□□□□□ -1.74
LSM1-202ENST00000520286 IGHV3-43A0A0B4J1X8 118 aa4.15□□□□□ -1.75
LSM1-202ENST00000520286 TRAV4A0A0B4J268 109 aa4.15□□□□□ -1.75
LSM1-202ENST00000520286 A0A1B0GX51 115 aa4.15□□□□□ -1.75
LSM1-202ENST00000520286 A8MWV9 139 aa4.15□□□□□ -1.75
LSM1-202ENST00000520286 K7ERS5 55 aa4.15□□□□□ -1.75
LSM1-202ENST00000520286 CD7P09564 240 aa4.15□□□□□ -1.75
LSM1-202ENST00000520286 RPL39P5Q59GN2 51 aa4.15□□□□□ -1.75
LSM1-202ENST00000520286 OR11H6Q8NGC7 330 aa4.15□□□□□ -1.75
LSM1-202ENST00000520286 TRGV9Q99603 122 aa4.15□□□□□ -1.75
LSM1-202ENST00000520286 NXT2Q9NPJ8 142 aaKnown RBP4.15□□□□□ -1.75
LSM1-202ENST00000520286 TIMM8BQ9Y5J9 83 aaPredicted RBP4.15□□□□□ -1.75
LSM1-202ENST00000520286 IGHV1-45A0A0A0MS14 117 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 TRAV12-1A0A0B4J245 112 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 TRBV7-7A0A0K0K1E9 115 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 SMIM9A6NGZ8 99 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 DEFB108AA8MXU0 73 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 K7EMI3 77 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 SNCGO76070 127 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 TCL1BO95988 128 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 LGALS1P09382 135 aaKnown RBP4.14□□□□□ -1.75
LSM1-202ENST00000520286 PLNP26678 52 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 TBC1D28Q2M2D7 210 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 LINC00305Q7Z4B0 112 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 FAM19A3Q7Z5A8 133 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 OR4C13Q8NGP0 309 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 ODF3Q96PU9 254 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 SPANXDQ9BXN6 97 aa4.14□□□□□ -1.75
LSM1-202ENST00000520286 CNFNQ9BYD5 112 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms