RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SND1-IT1Q9HBX3 110 aa8.72□□□□□ -1.01
SYNPO-204ENST00000519664 CDKN2A-AS1Q9UH64 79 aa8.72□□□□□ -1.01
SYNPO-204ENST00000519664 U3KQK5 164 aa8.72□□□□□ -1.01
SYNPO-204ENST00000519664 ZNF292O60281 2723 aa8.72□□□□□ -1.01
SYNPO-204ENST00000519664 SOCS3O14543 225 aa8.72□□□□□ -1.01
SYNPO-204ENST00000519664 MRAPQ8TCY5 172 aa8.72□□□□□ -1.01
SYNPO-204ENST00000519664 A0A0B4J2C4 111 aa8.71□□□□□ -1.01
SYNPO-204ENST00000519664 Q9HAA7 133 aa8.71□□□□□ -1.02
SYNPO-204ENST00000519664 M0QXV9 152 aa8.71□□□□□ -1.02
SYNPO-204ENST00000519664 M0QY20 66 aa8.71□□□□□ -1.02
SYNPO-204ENST00000519664 SHISA2Q6UWI4 295 aa8.71□□□□□ -1.02
SYNPO-204ENST00000519664 LINC00467Q9BRT7 94 aa8.71□□□□□ -1.02
SYNPO-204ENST00000519664 HHLA3Q9XRX5 114 aa8.71□□□□□ -1.02
SYNPO-204ENST00000519664 ICOSQ9Y6W8 199 aa8.71□□□□□ -1.02
SYNPO-204ENST00000519664 IGHV4-4A0A075B6R2 117 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 APOC4P55056 127 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 DEFB114Q30KQ6 69 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 Q6YL49 198 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 DNAJC30Q96LL9 226 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 A0A1B0GX51 115 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 PSMB8P28062 276 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 EYSQ5T1H1 3165 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 TRAV13-2A0A0B4J235 113 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 HAMPP81172 84 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 C4orf3Q8WVX3 66 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 WFDC10AQ9H1F0 79 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 MGAM2Q2M2H8 2515 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 IGHV1-58A0A0C4DH39 117 aa8.7□□□□□ -1.02
SYNPO-204ENST00000519664 DAZ2Q13117 558 aaKnown RBP8.7□□□□□ -1.02
SYNPO-204ENST00000519664 DAZ4Q86SG3 579 aaKnown RBP8.7□□□□□ -1.02
SYNPO-204ENST00000519664 DAZ3Q9NR90 486 aaKnown RBP8.7□□□□□ -1.02
SYNPO-204ENST00000519664 LINC00643Q86TS7 51 aa8.69□□□□□ -1.02
SYNPO-204ENST00000519664 C16orf74Q96GX8 76 aa8.69□□□□□ -1.02
SYNPO-204ENST00000519664 C3orf22Q8N5N4 141 aa8.69□□□□□ -1.02
SYNPO-204ENST00000519664 BOD1L1Q8NFC6 3051 aa8.69□□□□□ -1.02
SYNPO-204ENST00000519664 KRTAP10-9P60411 292 aa8.69□□□□□ -1.02
SYNPO-204ENST00000519664 RBMY1FQ15415 496 aaKnown RBP8.69□□□□□ -1.02
SYNPO-204ENST00000519664 IGLV4-3A0A075B6K6 122 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 IGHV3-30P01768 117 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 IGHV3-33P01772 117 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 IGHV3-30-5P0DP03 117 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 Q6Q795 121 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 Q6ZSV7 163 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 UBE2DNLQ8IWF7 75 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 MIR7-3HGQ8N6C7 128 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 TMEM89A2RUT3 159 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 RNF152Q8N8N0 203 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 A0A0J9YXY3 114 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 PSCAO43653 123 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 ZNF22P17026 224 aaPredicted RBP8.68□□□□□ -1.02
SYNPO-204ENST00000519664 NFE4Q86UQ8 179 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 MAST4O15021 2626 aa8.68□□□□□ -1.02
SYNPO-204ENST00000519664 TEX49A0A1B0GTD5 131 aa8.67□□□□□ -1.02
SYNPO-204ENST00000519664 NDUFA7O95182 113 aa8.67□□□□□ -1.02
SYNPO-204ENST00000519664 DCANP1Q8TF63 244 aa8.67□□□□□ -1.02
SYNPO-204ENST00000519664 IGKV2D-24A0A075B6R9 120 aa8.66□□□□□ -1.02
SYNPO-204ENST00000519664 A0A096LNJ9 63 aa8.66□□□□□ -1.02
SYNPO-204ENST00000519664 TRAV25A0A0B4J276 109 aa8.66□□□□□ -1.02
SYNPO-204ENST00000519664 GHRHP01286 108 aa8.66□□□□□ -1.02
SYNPO-204ENST00000519664 COX7B2Q8TF08 81 aa8.66□□□□□ -1.02
SYNPO-204ENST00000519664 TMEM263Q8WUH6 116 aaKnown RBP8.66□□□□□ -1.02
SYNPO-204ENST00000519664 PCSK5Q92824 1860 aa8.65□□□□□ -1.02
SYNPO-204ENST00000519664 UBL5Q9BZL1 73 aa8.65□□□□□ -1.02
SYNPO-204ENST00000519664 CRYGDP07320 174 aa8.65□□□□□ -1.02
SYNPO-204ENST00000519664 LRRC75A-AS1Q8N1F1 130 aa8.65□□□□□ -1.02
SYNPO-204ENST00000519664 KLK12Q9UKR0 248 aa8.65□□□□□ -1.02
SYNPO-204ENST00000519664 CFAP46Q8IYW2 2715 aa8.65□□□□□ -1.03
SYNPO-204ENST00000519664 KLLNB2CW77 178 aa8.65□□□□□ -1.03
SYNPO-204ENST00000519664 TRBV27A0A0K0K1C4 114 aa8.64□□□□□ -1.03
SYNPO-204ENST00000519664 LGALS9O00182 355 aa8.64□□□□□ -1.03
SYNPO-204ENST00000519664 IGLV1-40P01703 118 aa8.64□□□□□ -1.03
SYNPO-204ENST00000519664 LINC00482Q8N8I6 264 aa8.64□□□□□ -1.03
SYNPO-204ENST00000519664 RBM3P98179 157 aaKnown RBP8.64□□□□□ -1.03
SYNPO-204ENST00000519664 ZNF702PQ9H963 129 aa8.64□□□□□ -1.03
SYNPO-204ENST00000519664 POLR2KP53803 58 aaKnown RBP8.64□□□□□ -1.03
SYNPO-204ENST00000519664 CNFNQ9BYD5 112 aa8.64□□□□□ -1.03
SYNPO-204ENST00000519664 LECT2O14960 151 aa8.64□□□□□ -1.03
SYNPO-204ENST00000519664 TMEM258P61165 79 aa8.64□□□□□ -1.03
SYNPO-204ENST00000519664 IMUPQ9GZP8 106 aa8.64□□□□□ -1.03
SYNPO-204ENST00000519664 COL4A2P08572 1712 aa8.63□□□□□ -1.03
SYNPO-204ENST00000519664 SMIM9A6NGZ8 99 aa8.63□□□□□ -1.03
SYNPO-204ENST00000519664 COX7A2LO14548 114 aa8.63□□□□□ -1.03
SYNPO-204ENST00000519664 NDUFC2O95298 119 aa8.63□□□□□ -1.03
SYNPO-204ENST00000519664 PIK3CD-AS1Q5SR53 167 aa8.63□□□□□ -1.03
SYNPO-204ENST00000519664 ZNF843Q8N446 348 aa8.63□□□□□ -1.03
SYNPO-204ENST00000519664 SPART-AS1P0CW21 52 aa8.62□□□□□ -1.03
SYNPO-204ENST00000519664 NKAPP1Q8N9T2 125 aa8.62□□□□□ -1.03
SYNPO-204ENST00000519664 C9orf66Q5T8R8 295 aa8.62□□□□□ -1.03
SYNPO-204ENST00000519664 IGKV3D-7A0A0C4DH55 119 aa8.61□□□□□ -1.03
SYNPO-204ENST00000519664 TSHBP01222 138 aa8.61□□□□□ -1.03
SYNPO-204ENST00000519664 LINC00694P0DN24 101 aa8.61□□□□□ -1.03
SYNPO-204ENST00000519664 DEFB105AQ8NG35 78 aa8.61□□□□□ -1.03
SYNPO-204ENST00000519664 LOC100131303A0A0U1RQF7 123 aa8.61□□□□□ -1.03
SYNPO-204ENST00000519664 TMEM223A0PJW6 202 aa8.61□□□□□ -1.03
SYNPO-204ENST00000519664 ODF3Q96PU9 254 aa8.61□□□□□ -1.03
SYNPO-204ENST00000519664 CDIP1Q9H305 208 aa8.61□□□□□ -1.03
SYNPO-204ENST00000519664 TRBV10-1A0A0K0K1A3 114 aa8.61□□□□□ -1.03
SYNPO-204ENST00000519664 FAM222AQ5U5X8 452 aa8.61□□□□□ -1.03
SYNPO-204ENST00000519664 MIAQ16674 131 aa8.6□□□□□ -1.03
SYNPO-204ENST00000519664 FLNAP21333 2647 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms