RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 APOC3P02656 99 aa0.65□□□□□ -2.31
NUP54-215ENST00000514313 GTF2H5Q6ZYL4 71 aa0.65□□□□□ -2.31
NUP54-215ENST00000514313 SYNE1Q8NF91 8797 aaKnown RBP0.65□□□□□ -2.31
NUP54-215ENST00000514313 RIMS1Q86UR5 1692 aaKnown RBP0.65□□□□□ -2.31
NUP54-215ENST00000514313 SCAPERQ9BY12 1400 aa0.64□□□□□ -2.31
NUP54-215ENST00000514313 WNK3Q9BYP7 1800 aa0.64□□□□□ -2.31
NUP54-215ENST00000514313 C20orf202A1L168 122 aa0.64□□□□□ -2.31
NUP54-215ENST00000514313 BCE1O60756 84 aa0.64□□□□□ -2.31
NUP54-215ENST00000514313 CDC42SE2Q9NRR3 84 aa0.64□□□□□ -2.31
NUP54-215ENST00000514313 PRO0255Q9UI72 69 aa0.64□□□□□ -2.31
NUP54-215ENST00000514313 GPR98Q8WXG9 6306 aa0.64□□□□□ -2.31
NUP54-215ENST00000514313 KIF21AQ7Z4S6 1674 aa0.63□□□□□ -2.31
NUP54-215ENST00000514313 SFT2D2O95562 160 aa0.63□□□□□ -2.31
NUP54-215ENST00000514313 FAM135AQ9P2D6 1515 aa0.63□□□□□ -2.31
NUP54-215ENST00000514313 KDM3BQ7LBC6 1761 aa0.62□□□□□ -2.31
NUP54-215ENST00000514313 LRRC37A2A6NM11 1700 aa0.62□□□□□ -2.31
NUP54-215ENST00000514313 UQCR10Q9UDW1 63 aa0.62□□□□□ -2.31
NUP54-215ENST00000514313 NRKQ7Z2Y5 1582 aa0.62□□□□□ -2.31
NUP54-215ENST00000514313 F8P00451 2351 aa0.61□□□□□ -2.31
NUP54-215ENST00000514313 S100PP25815 95 aa0.61□□□□□ -2.31
NUP54-215ENST00000514313 HSD52Q0P140 79 aa0.61□□□□□ -2.31
NUP54-215ENST00000514313 Q6JHZ5 121 aa0.61□□□□□ -2.31
NUP54-215ENST00000514313 NAV2Q8IVL1 2488 aa0.61□□□□□ -2.31
NUP54-215ENST00000514313 LRP6O75581 1613 aa0.6□□□□□ -2.31
NUP54-215ENST00000514313 MAPKBP1O60336 1514 aa0.6□□□□□ -2.31
NUP54-215ENST00000514313 TRAV22A0A0B4J277 110 aa0.6□□□□□ -2.31
NUP54-215ENST00000514313 FAM167A-AS1Q96KT0 104 aa0.6□□□□□ -2.31
NUP54-215ENST00000514313 Q0VG73 95 aa0.59□□□□□ -2.31
NUP54-215ENST00000514313 MANBALQ9NQG1 85 aa0.59□□□□□ -2.31
NUP54-215ENST00000514313 POLQO75417 2590 aa0.59□□□□□ -2.32
NUP54-215ENST00000514313 SNCAP37840 140 aa0.58□□□□□ -2.32
NUP54-215ENST00000514313 NXT2Q9NPJ8 142 aaKnown RBP0.58□□□□□ -2.32
NUP54-215ENST00000514313 CELSR2Q9HCU4 2923 aa0.58□□□□□ -2.32
NUP54-215ENST00000514313 PEG3Q9GZU2 1588 aa0.57□□□□□ -2.32
NUP54-215ENST00000514313 S100A3P33764 101 aa0.57□□□□□ -2.32
NUP54-215ENST00000514313 LAMC1P11047 1609 aa0.56□□□□□ -2.32
NUP54-215ENST00000514313 MYOM1P52179 1685 aa0.56□□□□□ -2.32
NUP54-215ENST00000514313 SPCS1Q9Y6A9 102 aa0.56□□□□□ -2.32
NUP54-215ENST00000514313 ERCC6L2Q5T890 1561 aa0.56□□□□□ -2.32
NUP54-215ENST00000514313 SBF2Q86WG5 1849 aa0.55□□□□□ -2.32
NUP54-215ENST00000514313 H3BQ15 152 aa0.55□□□□□ -2.32
NUP54-215ENST00000514313 IGLC1P0CG04 106 aa0.55□□□□□ -2.32
NUP54-215ENST00000514313 ARL2-SNX15V9GYD0 113 aa0.55□□□□□ -2.32
NUP54-215ENST00000514313 TCHHQ07283 1943 aa0.54□□□□□ -2.32
NUP54-215ENST00000514313 FAT4Q6V0I7 4981 aa0.54□□□□□ -2.32
NUP54-215ENST00000514313 NAP1L6A6NFF2 107 aa0.54□□□□□ -2.32
NUP54-215ENST00000514313 FAM208BQ5VWN6 2430 aa0.54□□□□□ -2.32
NUP54-215ENST00000514313 PIEZO1Q92508 2521 aa0.53□□□□□ -2.32
NUP54-215ENST00000514313 UBE2D3P61077 147 aa0.53□□□□□ -2.32
NUP54-215ENST00000514313 UBE2D2P62837 147 aa0.53□□□□□ -2.32
NUP54-215ENST00000514313 SFTA2Q6UW10 78 aa0.53□□□□□ -2.32
NUP54-215ENST00000514313 FAM223AQ8IWN6 122 aa0.53□□□□□ -2.32
NUP54-215ENST00000514313 C14orf144Q96I85 54 aa0.53□□□□□ -2.32
NUP54-215ENST00000514313 KDM5AP29375 1690 aaKnown RBP0.53□□□□□ -2.33
NUP54-215ENST00000514313 MGPP08493 103 aa0.52□□□□□ -2.33
NUP54-215ENST00000514313 FAIMQ9NVQ4 179 aa0.52□□□□□ -2.33
NUP54-215ENST00000514313 ARHGAP5Q13017 1502 aa0.52□□□□□ -2.33
NUP54-215ENST00000514313 ARHGEF5Q12774 1597 aa0.52□□□□□ -2.33
NUP54-215ENST00000514313 ANK2Q01484 3957 aa0.52□□□□□ -2.33
NUP54-215ENST00000514313 TMEM262E9PQX1 116 aa0.51□□□□□ -2.33
NUP54-215ENST00000514313 M0R3E3 92 aa0.51□□□□□ -2.33
NUP54-215ENST00000514313 HMGXB3Q12766 1538 aa0.51□□□□□ -2.33
NUP54-215ENST00000514313 SPRR4Q96PI1 79 aa0.51□□□□□ -2.33
NUP54-215ENST00000514313 SPHKAPQ2M3C7 1700 aa0.5□□□□□ -2.33
NUP54-215ENST00000514313 TP53AIP1Q9HCN2 124 aa0.5□□□□□ -2.33
NUP54-215ENST00000514313 PRO1854Q9UHT4 67 aa0.5□□□□□ -2.33
NUP54-215ENST00000514313 PTPRZ1P23471 2315 aaPredicted RBP0.5□□□□□ -2.33
NUP54-215ENST00000514313 AHCTF1Q8WYP5 2266 aa0.5□□□□□ -2.33
NUP54-215ENST00000514313 OTOGQ6ZRI0 2925 aa0.5□□□□□ -2.33
NUP54-215ENST00000514313 TET3O43151 1660 aa0.49□□□□□ -2.33
NUP54-215ENST00000514313 SHANK2Q9UPX8 1470 aa0.49□□□□□ -2.33
NUP54-215ENST00000514313 U3KQA8 63 aa0.49□□□□□ -2.33
NUP54-215ENST00000514313 C10orf142B7Z368 130 aa0.48□□□□□ -2.33
NUP54-215ENST00000514313 C12orf57Q99622 126 aa0.48□□□□□ -2.33
NUP54-215ENST00000514313 CGREF1Q99674 301 aa0.48□□□□□ -2.33
NUP54-215ENST00000514313 TCEAL7Q9BRU2 100 aa0.48□□□□□ -2.33
NUP54-215ENST00000514313 IGF2RP11717 2491 aa0.48□□□□□ -2.33
NUP54-215ENST00000514313 BIVM-ERCC5R4GMW8 1640 aa0.48□□□□□ -2.33
NUP54-215ENST00000514313 MUC5ACP98088 5654 aa0.47□□□□□ -2.33
NUP54-215ENST00000514313 ATP6V1G2-DDX39BF2Z307 99 aa0.47□□□□□ -2.33
NUP54-215ENST00000514313 COX6CP09669 75 aa0.47□□□□□ -2.33
NUP54-215ENST00000514313 TRAPPC2P0DI81 140 aa0.47□□□□□ -2.33
NUP54-215ENST00000514313 TRAPPC2BP0DI82 140 aa0.47□□□□□ -2.33
NUP54-215ENST00000514313 Q8IZM0 81 aa0.47□□□□□ -2.33
NUP54-215ENST00000514313 BTAF1O14981 1849 aa0.46□□□□□ -2.34
NUP54-215ENST00000514313 hADV29S1A0JD25 119 aa0.46□□□□□ -2.34
NUP54-215ENST00000514313 CRYM-AS1A6NIL9 109 aa0.46□□□□□ -2.34
NUP54-215ENST00000514313 I3L2K1 104 aa0.46□□□□□ -2.34
NUP54-215ENST00000514313 TMEM263Q8WUH6 116 aaKnown RBP0.46□□□□□ -2.34
NUP54-215ENST00000514313 RAPGEF6Q8TEU7 1601 aa0.46□□□□□ -2.34
NUP54-215ENST00000514313 CFDP00746 253 aaPredicted RBP0.45□□□□□ -2.34
NUP54-215ENST00000514313 NSD3Q9BZ95 1437 aa0.45□□□□□ -2.34
NUP54-215ENST00000514313 CC2D2AQ9P2K1 1620 aa0.45□□□□□ -2.34
NUP54-215ENST00000514313 TMEM218A2RU14 115 aa0.44□□□□□ -2.34
NUP54-215ENST00000514313 KRTDAPP60985 99 aa0.44□□□□□ -2.34
NUP54-215ENST00000514313 UBA52P62987 128 aaKnown RBP0.44□□□□□ -2.34
NUP54-215ENST00000514313 ZFYVE16Q7Z3T8 1539 aa0.43□□□□□ -2.34
NUP54-215ENST00000514313 EHBP1L1Q8N3D4 1523 aa0.43□□□□□ -2.34
NUP54-215ENST00000514313 ZFYVE26Q68DK2 2539 aa0.43□□□□□ -2.34
NUP54-215ENST00000514313 LRP1Q07954 4544 aaKnown RBP0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms