RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 DGAT2L7PQ6IED9 249 aa13.65□□□□□ -0.22
USP53-208ENST00000514305 FA2HQ7L5A8 372 aa13.65□□□□□ -0.22
USP53-208ENST00000514305 NFE4Q86UQ8 179 aa13.65□□□□□ -0.22
USP53-208ENST00000514305 TRGC2P03986 189 aa13.64□□□□□ -0.23
USP53-208ENST00000514305 IFI27P40305 119 aaPredicted RBP13.64□□□□□ -0.23
USP53-208ENST00000514305 RNASEKQ6P5S7 137 aaKnown RBP13.64□□□□□ -0.23
USP53-208ENST00000514305 DNAH11Q96DT5 4516 aa13.63□□□□□ -0.23
USP53-208ENST00000514305 TRAV8-3A0A0A6YYJ7 113 aa13.63□□□□□ -0.23
USP53-208ENST00000514305 C16orf90A8MZG2 172 aa13.63□□□□□ -0.23
USP53-208ENST00000514305 IBA57-AS1B1ANH7 110 aa13.63□□□□□ -0.23
USP53-208ENST00000514305 ANGP03950 147 aaKnown RBP13.63□□□□□ -0.23
USP53-208ENST00000514305 RBX1P62877 108 aa13.63□□□□□ -0.23
USP53-208ENST00000514305 Q0VG73 95 aa13.63□□□□□ -0.23
USP53-208ENST00000514305 DYNC1H1Q14204 4646 aaKnown RBP13.62□□□□□ -0.23
USP53-208ENST00000514305 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.62□□□□□ -0.23
USP53-208ENST00000514305 IGKV2-29A2NJV5 120 aaPredicted RBP13.62□□□□□ -0.23
USP53-208ENST00000514305 CRPP02741 224 aa13.62□□□□□ -0.23
USP53-208ENST00000514305 FGF6P10767 208 aa13.62□□□□□ -0.23
USP53-208ENST00000514305 MPV17L2Q567V2 206 aa13.62□□□□□ -0.23
USP53-208ENST00000514305 C20orf203Q8NBC4 194 aa13.62□□□□□ -0.23
USP53-208ENST00000514305 MRPL52Q86TS9 123 aaKnown RBP13.61□□□□□ -0.23
USP53-208ENST00000514305 OR5A1Q8NGJ0 315 aa13.61□□□□□ -0.23
USP53-208ENST00000514305 C18orf32Q8TCD1 76 aa13.61□□□□□ -0.23
USP53-208ENST00000514305 RMI2Q96E14 147 aa13.61□□□□□ -0.23
USP53-208ENST00000514305 KLK12Q9UKR0 248 aa13.61□□□□□ -0.23
USP53-208ENST00000514305 TIMM21Q9BVV7 248 aa13.6□□□□□ -0.23
USP53-208ENST00000514305 CYSLTR1Q9Y271 337 aa13.6□□□□□ -0.23
USP53-208ENST00000514305 CSDC2Q9Y534 153 aaKnown RBP13.6□□□□□ -0.23
USP53-208ENST00000514305 LINC00614P0C842 121 aa13.59□□□□□ -0.23
USP53-208ENST00000514305 TM2D2Q9BX73 214 aa13.59□□□□□ -0.23
USP53-208ENST00000514305 AP5S1Q9NUS5 200 aa13.59□□□□□ -0.23
USP53-208ENST00000514305 COX11Q9Y6N1 276 aa13.59□□□□□ -0.23
USP53-208ENST00000514305 Q8N976 141 aa13.58□□□□□ -0.24
USP53-208ENST00000514305 SPANXA1Q9NS26 97 aa13.58□□□□□ -0.24
USP53-208ENST00000514305 LINC01546A6NGU7 62 aa13.57□□□□□ -0.24
USP53-208ENST00000514305 BAGE3Q86Y29 109 aa13.57□□□□□ -0.24
USP53-208ENST00000514305 UBE2WQ96B02 151 aa13.57□□□□□ -0.24
USP53-208ENST00000514305 MIAQ16674 131 aa13.56□□□□□ -0.24
USP53-208ENST00000514305 CHCHD1Q96BP2 118 aaKnown RBP13.56□□□□□ -0.24
USP53-208ENST00000514305 TRAV8-4A0A0B4J246 113 aa13.55□□□□□ -0.24
USP53-208ENST00000514305 PAPPA-AS1Q5QFB9 102 aa13.55□□□□□ -0.24
USP53-208ENST00000514305 C2orf66Q6UXQ4 117 aa13.55□□□□□ -0.24
USP53-208ENST00000514305 LINC00269Q8N2A0 174 aa13.55□□□□□ -0.24
USP53-208ENST00000514305 KRTAP1-5Q9BYS1 174 aa13.55□□□□□ -0.24
USP53-208ENST00000514305 UBE2D4Q9Y2X8 147 aa13.55□□□□□ -0.24
USP53-208ENST00000514305 PYGO1Q9Y3Y4 419 aa13.55□□□□□ -0.24
USP53-208ENST00000514305 IGLV4-60A0A075B6I1 120 aa13.54□□□□□ -0.24
USP53-208ENST00000514305 CDK2AP2O75956 126 aa13.54□□□□□ -0.24
USP53-208ENST00000514305 NPSP0C0P6 89 aa13.54□□□□□ -0.24
USP53-208ENST00000514305 REG3AQ06141 175 aa13.54□□□□□ -0.24
USP53-208ENST00000514305 ZNF664Q8N3J9 261 aa13.54□□□□□ -0.24
USP53-208ENST00000514305 C1orf43Q9BWL3 253 aa13.53□□□□□ -0.24
USP53-208ENST00000514305 Q9HAA7 133 aa13.53□□□□□ -0.24
USP53-208ENST00000514305 PRR34Q9NV39 138 aa13.53□□□□□ -0.24
USP53-208ENST00000514305 C1orf196B1AJZ1 125 aa13.52□□□□□ -0.25
USP53-208ENST00000514305 CCL25O15444 150 aa13.52□□□□□ -0.25
USP53-208ENST00000514305 PSCAO43653 123 aa13.52□□□□□ -0.25
USP53-208ENST00000514305 RPL39P62891 51 aaKnown RBP13.52□□□□□ -0.25
USP53-208ENST00000514305 MRPS36P82909 103 aaKnown RBP13.52□□□□□ -0.25
USP53-208ENST00000514305 Q6ZN92 141 aa13.52□□□□□ -0.25
USP53-208ENST00000514305 SPATA12Q7Z6I5 190 aa13.52□□□□□ -0.25
USP53-208ENST00000514305 TOMM6Q96B49 74 aa13.52□□□□□ -0.25
USP53-208ENST00000514305 KRTAP4-12Q9BQ66 201 aa13.52□□□□□ -0.25
USP53-208ENST00000514305 CDC42SE2Q9NRR3 84 aa13.52□□□□□ -0.25
USP53-208ENST00000514305 RYR1P21817 5038 aa13.51□□□□□ -0.25
USP53-208ENST00000514305 IGKV2D-24A0A075B6R9 120 aa13.5□□□□□ -0.25
USP53-208ENST00000514305 HSBP1O75506 76 aa13.5□□□□□ -0.25
USP53-208ENST00000514305 TMEM141Q96I45 108 aa13.5□□□□□ -0.25
USP53-208ENST00000514305 HBDP02042 147 aa13.49□□□□□ -0.25
USP53-208ENST00000514305 SS18Q15532 418 aa13.49□□□□□ -0.25
USP53-208ENST00000514305 ENHOQ6UWT2 76 aa13.49□□□□□ -0.25
USP53-208ENST00000514305 ERASQ7Z444 233 aa13.49□□□□□ -0.25
USP53-208ENST00000514305 MAPKAPK5-AS1Q8N8E1 139 aa13.49□□□□□ -0.25
USP53-208ENST00000514305 SCGB3A1Q96QR1 104 aa13.49□□□□□ -0.25
USP53-208ENST00000514305 TIMM17AQ99595 171 aa13.49□□□□□ -0.25
USP53-208ENST00000514305 CLPSL2Q6UWE3 100 aa13.47□□□□□ -0.25
USP53-208ENST00000514305 C2orf88Q9BSF0 95 aa13.47□□□□□ -0.25
USP53-208ENST00000514305 KRTAP4-5Q9BYR2 181 aa13.47□□□□□ -0.25
USP53-208ENST00000514305 VCX2Q9H322 139 aa13.47□□□□□ -0.25
USP53-208ENST00000514305 IGKV3OR2-268A0A0C4DH90 116 aa13.46□□□□□ -0.25
USP53-208ENST00000514305 TEX43Q6ZNM6 134 aa13.46□□□□□ -0.25
USP53-208ENST00000514305 HSPG2P98160 4391 aa13.46□□□□□ -0.26
USP53-208ENST00000514305 ATP5LO75964 103 aa13.45□□□□□ -0.26
USP53-208ENST00000514305 Q6ZUT4 128 aa13.45□□□□□ -0.26
USP53-208ENST00000514305 URB1-AS1Q96HZ7 61 aa13.45□□□□□ -0.26
USP53-208ENST00000514305 IGLV4-3A0A075B6K6 122 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 IGIPA6NJ69 53 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST1H2BKO60814 126 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST1H2BJP06899 126 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST1H2BOP23527 126 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST1H2BBP33778 126 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST1H2BDP58876 126 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST1H2BCP62807 126 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST2H2BEQ16778 126 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST1H2BHQ93079 126 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST1H2BNQ99877 126 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 HIST1H2BMQ99879 126 aa13.44□□□□□ -0.26
USP53-208ENST00000514305 ABCA13Q86UQ4 5058 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms