RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 FRAS1Q86XX4 4008 aa7.6□□□□□ -1.19
LIMCH1-210ENST00000509454 Q8N8P6 123 aa7.6□□□□□ -1.19
LIMCH1-210ENST00000509454 PRR34Q9NV39 138 aa7.6□□□□□ -1.19
LIMCH1-210ENST00000509454 DNAH2Q9P225 4427 aa7.6□□□□□ -1.19
LIMCH1-210ENST00000509454 C16orf90A8MZG2 172 aa7.59□□□□□ -1.19
LIMCH1-210ENST00000509454 FUSP35637 526 aaKnown RBP eCLIP7.59□□□□□ -1.19
LIMCH1-210ENST00000509454 RPL39P62891 51 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-210ENST00000509454 PRSS3P2Q8NHM4 247 aa7.59□□□□□ -1.19
LIMCH1-210ENST00000509454 NXT2Q9NPJ8 142 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-210ENST00000509454 TRAV8-4A0A0B4J246 113 aa7.58□□□□□ -1.2
LIMCH1-210ENST00000509454 IFI27P40305 119 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-210ENST00000509454 KRTAP10-2P60368 255 aa7.58□□□□□ -1.2
LIMCH1-210ENST00000509454 RNASE13Q5GAN3 156 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-210ENST00000509454 MRPL52Q86TS9 123 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-210ENST00000509454 ZNF664Q8N3J9 261 aa7.58□□□□□ -1.2
LIMCH1-210ENST00000509454 UBE2D4Q9Y2X8 147 aa7.58□□□□□ -1.2
LIMCH1-210ENST00000509454 DNAH17Q9UFH2 4485 aa7.58□□□□□ -1.2
LIMCH1-210ENST00000509454 LRCOL1A6NCL2 159 aa7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 PRSS47A8MTI9 375 aa7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 ORMDL2Q53FV1 153 aa7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 MAPKAPK5-AS1Q8N8E1 139 aa7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 ALKBH7Q9BT30 221 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 GAGE12HA6NDE8 117 aa7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 WFDC2Q14508 124 aa7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 SS18Q15532 418 aa7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 FA2HQ7L5A8 372 aa7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 Q8N814 137 aa7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 CHCHD10Q8WYQ3 142 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 CDC42SE2Q9NRR3 84 aa7.57□□□□□ -1.2
LIMCH1-210ENST00000509454 EPPK1P58107 5090 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-210ENST00000509454 LOC100996750A0A140TA64 210 aa7.56□□□□□ -1.2
LIMCH1-210ENST00000509454 Q6ZUT4 128 aa7.56□□□□□ -1.2
LIMCH1-210ENST00000509454 TIMM21Q9BVV7 248 aa7.56□□□□□ -1.2
LIMCH1-210ENST00000509454 KRTAP4-6Q9BYQ5 205 aa7.56□□□□□ -1.2
LIMCH1-210ENST00000509454 SPANXA1Q9NS26 97 aa7.56□□□□□ -1.2
LIMCH1-210ENST00000509454 CYSLTR1Q9Y271 337 aa7.56□□□□□ -1.2
LIMCH1-210ENST00000509454 IGLV5-52A0A0A0MRZ9 124 aa7.55□□□□□ -1.2
LIMCH1-210ENST00000509454 TRAV13-1A0A0B4J241 112 aa7.55□□□□□ -1.2
LIMCH1-210ENST00000509454 LINC00959A0A1B0GUT2 108 aa7.55□□□□□ -1.2
LIMCH1-210ENST00000509454 USP17L23D6RBM5 183 aa7.55□□□□□ -1.2
LIMCH1-210ENST00000509454 XCL1P47992 114 aa7.55□□□□□ -1.2
LIMCH1-210ENST00000509454 C14orf177Q52M58 125 aa7.55□□□□□ -1.2
LIMCH1-210ENST00000509454 C2orf66Q6UXQ4 117 aa7.55□□□□□ -1.2
LIMCH1-210ENST00000509454 YPEL4Q96NS1 127 aa7.55□□□□□ -1.2
LIMCH1-210ENST00000509454 CSDC2Q9Y534 153 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-210ENST00000509454 K7EMI3 77 aa7.54□□□□□ -1.2
LIMCH1-210ENST00000509454 CCL25O15444 150 aa7.54□□□□□ -1.2
LIMCH1-210ENST00000509454 OPRPNQ99935 248 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-210ENST00000509454 FAT2Q9NYQ8 4349 aa7.54□□□□□ -1.2
LIMCH1-210ENST00000509454 G0S2P27469 103 aa7.53□□□□□ -1.2
LIMCH1-210ENST00000509454 CDPF1Q6NVV7 123 aa7.53□□□□□ -1.2
LIMCH1-210ENST00000509454 NTN5Q8WTR8 489 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-210ENST00000509454 IFITM10A6NMD0 228 aa7.52□□□□□ -1.2
LIMCH1-210ENST00000509454 KRTAP26-1Q6PEX3 210 aa7.52□□□□□ -1.2
LIMCH1-210ENST00000509454 Q6ZN92 141 aa7.52□□□□□ -1.2
LIMCH1-210ENST00000509454 hDV102S1A0JD36 115 aa7.52□□□□□ -1.21
LIMCH1-210ENST00000509454 C1orf196B1AJZ1 125 aa7.52□□□□□ -1.21
LIMCH1-210ENST00000509454 SCO1O75880 301 aa7.52□□□□□ -1.21
LIMCH1-210ENST00000509454 CFAP161Q6P656 301 aa7.52□□□□□ -1.21
LIMCH1-210ENST00000509454 TMEM141Q96I45 108 aa7.52□□□□□ -1.21
LIMCH1-210ENST00000509454 GCSHP23434 173 aa7.51□□□□□ -1.21
LIMCH1-210ENST00000509454 MRPS36P82909 103 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-210ENST00000509454 TEX43Q6ZNM6 134 aa7.51□□□□□ -1.21
LIMCH1-210ENST00000509454 C18orf32Q8TCD1 76 aa7.51□□□□□ -1.21
LIMCH1-210ENST00000509454 C2orf88Q9BSF0 95 aa7.51□□□□□ -1.21
LIMCH1-210ENST00000509454 PYGO1Q9Y3Y4 419 aa7.51□□□□□ -1.21
LIMCH1-210ENST00000509454 BIRC6Q9NR09 4857 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 HECTD4Q9Y4D8 3996 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 IGLV4-3A0A075B6K6 122 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 MALP21145 153 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 RAB5BP61020 215 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 FOXI1Q12951 378 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 CD164L2Q6UWJ8 174 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 TOMM6Q96B49 74 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 SCGB3A1Q96QR1 104 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 VCX2Q9H322 139 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 AP5S1Q9NUS5 200 aa7.5□□□□□ -1.21
LIMCH1-210ENST00000509454 TRGC2P03986 189 aa7.49□□□□□ -1.21
LIMCH1-210ENST00000509454 PRSS1P07477 247 aa7.49□□□□□ -1.21
LIMCH1-210ENST00000509454 LINC00614P0C842 121 aa7.49□□□□□ -1.21
LIMCH1-210ENST00000509454 HIGD2BQ4VC39 106 aa7.49□□□□□ -1.21
LIMCH1-210ENST00000509454 A6NJY4 79 aa7.48□□□□□ -1.21
LIMCH1-210ENST00000509454 COX7A2LO14548 114 aa7.48□□□□□ -1.21
LIMCH1-210ENST00000509454 PAPPA-AS1Q5QFB9 102 aa7.48□□□□□ -1.21
LIMCH1-210ENST00000509454 ZC2HC1BQ5TFG8 222 aa7.48□□□□□ -1.21
LIMCH1-210ENST00000509454 PKD1P98161 4303 aa7.48□□□□□ -1.21
LIMCH1-210ENST00000509454 LINC01546A6NGU7 62 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 COLCA2A8K830 154 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 PMCHL1Q16048 86 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 LINC01620Q4KN68 170 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 C5orf38Q86SI9 138 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 BAGE3Q86Y29 109 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 FAM104AQ969W3 186 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 IGHV1-58A0A0C4DH39 117 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 LINC01549A6NIU2 74 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 IGIPA6NJ69 53 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 KRTAP10-1P60331 282 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 ERASQ7Z444 233 aa7.47□□□□□ -1.21
LIMCH1-210ENST00000509454 C15orf56Q8N910 161 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms