RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 MAP1LC3AQ9H492 121 aa11.98□□□□□ -0.49
NPHP4-210ENST00000506941 IGKV3OR2-268A0A0C4DH90 116 aa11.97□□□□□ -0.49
NPHP4-210ENST00000506941 RPL39P62891 51 aaKnown RBP11.97□□□□□ -0.49
NPHP4-210ENST00000506941 OR5A1Q8NGJ0 315 aa11.97□□□□□ -0.49
NPHP4-210ENST00000506941 TMEM101Q96IK0 257 aa11.97□□□□□ -0.49
NPHP4-210ENST00000506941 PGPEP1Q9NXJ5 209 aa11.97□□□□□ -0.49
NPHP4-210ENST00000506941 UBE2D4Q9Y2X8 147 aa11.97□□□□□ -0.49
NPHP4-210ENST00000506941 TRAV8-4A0A0B4J246 113 aa11.96□□□□□ -0.49
NPHP4-210ENST00000506941 CDPF1Q6NVV7 123 aa11.96□□□□□ -0.49
NPHP4-210ENST00000506941 CDC42SE2Q9NRR3 84 aa11.96□□□□□ -0.49
NPHP4-210ENST00000506941 COX19Q49B96 90 aa11.95□□□□□ -0.5
NPHP4-210ENST00000506941 Q8N8P6 123 aa11.95□□□□□ -0.5
NPHP4-210ENST00000506941 YPEL4Q96NS1 127 aa11.95□□□□□ -0.5
NPHP4-210ENST00000506941 MRPL18Q9H0U6 180 aaKnown RBP11.95□□□□□ -0.5
NPHP4-210ENST00000506941 MT-ND6P03923 174 aa11.94□□□□□ -0.5
NPHP4-210ENST00000506941 ZNF664Q8N3J9 261 aa11.94□□□□□ -0.5
NPHP4-210ENST00000506941 CSDC2Q9Y534 153 aaKnown RBP11.94□□□□□ -0.5
NPHP4-210ENST00000506941 RYR1P21817 5038 aa11.94□□□□□ -0.5
NPHP4-210ENST00000506941 HSPG2P98160 4391 aa11.93□□□□□ -0.5
NPHP4-210ENST00000506941 RAB5AP20339 215 aa11.93□□□□□ -0.5
NPHP4-210ENST00000506941 RNASE13Q5GAN3 156 aaKnown RBP11.93□□□□□ -0.5
NPHP4-210ENST00000506941 NTN5Q8WTR8 489 aaPredicted RBP11.93□□□□□ -0.5
NPHP4-210ENST00000506941 FAM104AQ969W3 186 aa11.93□□□□□ -0.5
NPHP4-210ENST00000506941 TMEM18Q96B42 140 aa11.93□□□□□ -0.5
NPHP4-210ENST00000506941 ALKBH7Q9BT30 221 aaPredicted RBP11.93□□□□□ -0.5
NPHP4-210ENST00000506941 TIMM21Q9BVV7 248 aa11.93□□□□□ -0.5
NPHP4-210ENST00000506941 DNAH8Q96JB1 4490 aa11.92□□□□□ -0.5
NPHP4-210ENST00000506941 HERC2O95714 4834 aa11.92□□□□□ -0.5
NPHP4-210ENST00000506941 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.92□□□□□ -0.5
NPHP4-210ENST00000506941 USP17L23D6RBM5 183 aa11.92□□□□□ -0.5
NPHP4-210ENST00000506941 IFI27P40305 119 aaPredicted RBP11.92□□□□□ -0.5
NPHP4-210ENST00000506941 DGAT2L7PQ6IED9 249 aa11.92□□□□□ -0.5
NPHP4-210ENST00000506941 Q6ZUT4 128 aa11.92□□□□□ -0.5
NPHP4-210ENST00000506941 CHCHD10Q8WYQ3 142 aaPredicted RBP11.92□□□□□ -0.5
NPHP4-210ENST00000506941 IGLV5-52A0A0A0MRZ9 124 aa11.91□□□□□ -0.5
NPHP4-210ENST00000506941 LINC00959A0A1B0GUT2 108 aa11.91□□□□□ -0.5
NPHP4-210ENST00000506941 SMAGPQ0VAQ4 97 aa11.91□□□□□ -0.5
NPHP4-210ENST00000506941 FABP9Q0Z7S8 132 aa11.91□□□□□ -0.5
NPHP4-210ENST00000506941 CBLN2Q8IUK8 224 aa11.91□□□□□ -0.5
NPHP4-210ENST00000506941 GAGE12HA6NDE8 117 aa11.9□□□□□ -0.5
NPHP4-210ENST00000506941 KRTAP10-1P60331 282 aa11.9□□□□□ -0.5
NPHP4-210ENST00000506941 OPRPNQ99935 248 aaPredicted RBP11.9□□□□□ -0.5
NPHP4-210ENST00000506941 NXT2Q9NPJ8 142 aaKnown RBP11.9□□□□□ -0.5
NPHP4-210ENST00000506941 SPANXA1Q9NS26 97 aa11.89□□□□□ -0.51
NPHP4-210ENST00000506941 TRAPPC1Q9Y5R8 145 aa11.89□□□□□ -0.51
NPHP4-210ENST00000506941 PRSS1P07477 247 aa11.88□□□□□ -0.51
NPHP4-210ENST00000506941 K7EMI3 77 aa11.87□□□□□ -0.51
NPHP4-210ENST00000506941 CCL25O15444 150 aa11.87□□□□□ -0.51
NPHP4-210ENST00000506941 GCSHP23434 173 aa11.87□□□□□ -0.51
NPHP4-210ENST00000506941 XCL1P47992 114 aa11.87□□□□□ -0.51
NPHP4-210ENST00000506941 FOXI1Q12951 378 aa11.87□□□□□ -0.51
NPHP4-210ENST00000506941 C14orf177Q52M58 125 aa11.87□□□□□ -0.51
NPHP4-210ENST00000506941 ORMDL2Q53FV1 153 aa11.87□□□□□ -0.51
NPHP4-210ENST00000506941 SMCO4Q9NRQ5 59 aa11.87□□□□□ -0.51
NPHP4-210ENST00000506941 MRPS36P82909 103 aaKnown RBP11.86□□□□□ -0.51
NPHP4-210ENST00000506941 C2orf66Q6UXQ4 117 aa11.86□□□□□ -0.51
NPHP4-210ENST00000506941 SS18Q15532 418 aa11.85□□□□□ -0.51
NPHP4-210ENST00000506941 C15orf56Q8N910 161 aa11.85□□□□□ -0.51
NPHP4-210ENST00000506941 PRSS3P2Q8NHM4 247 aa11.85□□□□□ -0.51
NPHP4-210ENST00000506941 CYSLTR1Q9Y271 337 aa11.85□□□□□ -0.51
NPHP4-210ENST00000506941 PYGO1Q9Y3Y4 419 aa11.85□□□□□ -0.51
NPHP4-210ENST00000506941 IGLV4-3A0A075B6K6 122 aa11.84□□□□□ -0.51
NPHP4-210ENST00000506941 TRAV13-1A0A0B4J241 112 aa11.84□□□□□ -0.51
NPHP4-210ENST00000506941 LINC01546A6NGU7 62 aa11.84□□□□□ -0.51
NPHP4-210ENST00000506941 CDK2AP2O75956 126 aa11.84□□□□□ -0.51
NPHP4-210ENST00000506941 LINC01620Q4KN68 170 aa11.84□□□□□ -0.51
NPHP4-210ENST00000506941 C1orf196B1AJZ1 125 aa11.82□□□□□ -0.52
NPHP4-210ENST00000506941 CD164L2Q6UWJ8 174 aa11.82□□□□□ -0.52
NPHP4-210ENST00000506941 C18orf32Q8TCD1 76 aa11.82□□□□□ -0.52
NPHP4-210ENST00000506941 hDV102S1A0JD36 115 aa11.81□□□□□ -0.52
NPHP4-210ENST00000506941 IGIPA6NJ69 53 aa11.8□□□□□ -0.52
NPHP4-210ENST00000506941 IFITM10A6NMD0 228 aa11.8□□□□□ -0.52
NPHP4-210ENST00000506941 LINC00173Q6ZV60 143 aa11.8□□□□□ -0.52
NPHP4-210ENST00000506941 TOMM6Q96B49 74 aa11.8□□□□□ -0.52
NPHP4-210ENST00000506941 URB1-AS1Q96HZ7 61 aa11.8□□□□□ -0.52
NPHP4-210ENST00000506941 TMEM141Q96I45 108 aa11.8□□□□□ -0.52
NPHP4-210ENST00000506941 SLPIP03973 132 aa11.79□□□□□ -0.52
NPHP4-210ENST00000506941 HIGD2BQ4VC39 106 aa11.79□□□□□ -0.52
NPHP4-210ENST00000506941 ZC2HC1BQ5TFG8 222 aa11.79□□□□□ -0.52
NPHP4-210ENST00000506941 FA2HQ7L5A8 372 aa11.79□□□□□ -0.52
NPHP4-210ENST00000506941 CFAP161Q6P656 301 aa11.78□□□□□ -0.52
NPHP4-210ENST00000506941 KRTAP17-1Q9BYP8 105 aa11.78□□□□□ -0.52
NPHP4-210ENST00000506941 FAM30AQ9NZY2 134 aa11.78□□□□□ -0.52
NPHP4-210ENST00000506941 GVQW2A0A096LPI5 108 aaPredicted RBP11.77□□□□□ -0.53
NPHP4-210ENST00000506941 XGP55808 180 aa11.77□□□□□ -0.53
NPHP4-210ENST00000506941 CNBPP62633 177 aaKnown RBP11.77□□□□□ -0.53
NPHP4-210ENST00000506941 AMELXQ99217 191 aa11.77□□□□□ -0.53
NPHP4-210ENST00000506941 COX7A2LO14548 114 aa11.76□□□□□ -0.53
NPHP4-210ENST00000506941 SCO1O75880 301 aa11.76□□□□□ -0.53
NPHP4-210ENST00000506941 NPSP0C0P6 89 aa11.76□□□□□ -0.53
NPHP4-210ENST00000506941 G0S2P27469 103 aa11.76□□□□□ -0.53
NPHP4-210ENST00000506941 TEX43Q6ZNM6 134 aa11.76□□□□□ -0.53
NPHP4-210ENST00000506941 TIMM17AQ99595 171 aa11.76□□□□□ -0.53
NPHP4-210ENST00000506941 A0A096LNJ9 63 aa11.75□□□□□ -0.53
NPHP4-210ENST00000506941 IGHV1-58A0A0C4DH39 117 aa11.75□□□□□ -0.53
NPHP4-210ENST00000506941 COLCA2A8K830 154 aa11.75□□□□□ -0.53
NPHP4-210ENST00000506941 HAMPP81172 84 aa11.75□□□□□ -0.53
NPHP4-210ENST00000506941 Q6ZSA8 131 aa11.75□□□□□ -0.53
NPHP4-210ENST00000506941 C5orf38Q86SI9 138 aa11.75□□□□□ -0.53
NPHP4-210ENST00000506941 C9orf163Q8N9P6 203 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms