RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 TNRC6AQ8NDV7 1962 aaKnown RBP9.75□□□□□ -0.85
COL6A3-212ENST00000491769 C6orf99Q4VX62 202 aa9.74□□□□□ -0.85
COL6A3-212ENST00000491769 OTOGLQ3ZCN5 2332 aa9.74□□□□□ -0.85
COL6A3-212ENST00000491769 Q6ZVQ6 151 aa9.74□□□□□ -0.85
COL6A3-212ENST00000491769 DHRS4-AS1Q9P1J3 65 aa9.74□□□□□ -0.85
COL6A3-212ENST00000491769 Q6ZSR3 168 aa9.74□□□□□ -0.85
COL6A3-212ENST00000491769 C11orf71Q6IPW1 123 aa9.73□□□□□ -0.85
COL6A3-212ENST00000491769 ENHOQ6UWT2 76 aa9.73□□□□□ -0.85
COL6A3-212ENST00000491769 SDIM1Q6ZPB5 146 aa9.73□□□□□ -0.85
COL6A3-212ENST00000491769 M0R378 163 aa9.73□□□□□ -0.85
COL6A3-212ENST00000491769 IGLV2-11P01706 119 aa9.73□□□□□ -0.85
COL6A3-212ENST00000491769 PTH2Q96A98 100 aa9.73□□□□□ -0.85
COL6A3-212ENST00000491769 IGLV4-3A0A075B6K6 122 aa9.72□□□□□ -0.85
COL6A3-212ENST00000491769 C19orf71A6NCJ1 209 aa9.72□□□□□ -0.85
COL6A3-212ENST00000491769 LYPD6Q86Y78 171 aa9.72□□□□□ -0.85
COL6A3-212ENST00000491769 X6R8D5 127 aa9.72□□□□□ -0.85
COL6A3-212ENST00000491769 CD164L2Q6UWJ8 174 aa9.72□□□□□ -0.85
COL6A3-212ENST00000491769 J3KT08 172 aa9.71□□□□□ -0.85
COL6A3-212ENST00000491769 BRI3O95415 125 aa9.71□□□□□ -0.85
COL6A3-212ENST00000491769 U3KQK5 164 aa9.71□□□□□ -0.86
COL6A3-212ENST00000491769 RPL28P46779 137 aaKnown RBP9.7□□□□□ -0.86
COL6A3-212ENST00000491769 TDRG1Q3Y452 100 aa9.7□□□□□ -0.86
COL6A3-212ENST00000491769 RETNLBQ9BQ08 111 aa9.7□□□□□ -0.86
COL6A3-212ENST00000491769 TMEM223A0PJW6 202 aa9.7□□□□□ -0.86
COL6A3-212ENST00000491769 PRM2P04554 102 aa9.7□□□□□ -0.86
COL6A3-212ENST00000491769 CDPF1Q6NVV7 123 aa9.7□□□□□ -0.86
COL6A3-212ENST00000491769 ATRXP46100 2492 aa9.7□□□□□ -0.86
COL6A3-212ENST00000491769 FRMD6-AS1P0C7T7 363 aa9.7□□□□□ -0.86
COL6A3-212ENST00000491769 LINC00308Q8TCZ7 52 aa9.7□□□□□ -0.86
COL6A3-212ENST00000491769 Q8N9L7 120 aa9.69□□□□□ -0.86
COL6A3-212ENST00000491769 M0QXV9 152 aa9.69□□□□□ -0.86
COL6A3-212ENST00000491769 C10orf25Q5T742 122 aa9.69□□□□□ -0.86
COL6A3-212ENST00000491769 C20orf197Q8N268 126 aa9.69□□□□□ -0.86
COL6A3-212ENST00000491769 M0QY20 66 aa9.69□□□□□ -0.86
COL6A3-212ENST00000491769 ZNF22P17026 224 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-212ENST00000491769 DENND4CQ5VZ89 1909 aa9.68□□□□□ -0.86
COL6A3-212ENST00000491769 Q6ZS46 218 aa9.68□□□□□ -0.86
COL6A3-212ENST00000491769 LINC00643Q86TS7 51 aa9.68□□□□□ -0.86
COL6A3-212ENST00000491769 TECTAO75443 2155 aa9.68□□□□□ -0.86
COL6A3-212ENST00000491769 ZFAND3Q9H8U3 227 aa9.68□□□□□ -0.86
COL6A3-212ENST00000491769 LINC00959A0A1B0GUT2 108 aa9.67□□□□□ -0.86
COL6A3-212ENST00000491769 C1orf134Q5TEV5 83 aa9.67□□□□□ -0.86
COL6A3-212ENST00000491769 DSCAML1Q8TD84 2053 aa9.67□□□□□ -0.86
COL6A3-212ENST00000491769 PRYO14603 147 aa9.67□□□□□ -0.86
COL6A3-212ENST00000491769 NCOA6Q14686 2063 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-212ENST00000491769 TRBV6-5A0A0K0K1A5 114 aa9.67□□□□□ -0.86
COL6A3-212ENST00000491769 Q6ZQY7 126 aa9.67□□□□□ -0.86
COL6A3-212ENST00000491769 A8MZ25 164 aa9.66□□□□□ -0.86
COL6A3-212ENST00000491769 MRGPRG-AS1Q2M3A8 158 aa9.66□□□□□ -0.86
COL6A3-212ENST00000491769 IGLC6P0CF74 106 aa9.65□□□□□ -0.86
COL6A3-212ENST00000491769 KRTAP10-9P60411 292 aa9.65□□□□□ -0.86
COL6A3-212ENST00000491769 C1orf229Q6ZS94 237 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-212ENST00000491769 DSCAMO60469 2012 aa9.65□□□□□ -0.86
COL6A3-212ENST00000491769 PRR4Q16378 134 aa9.65□□□□□ -0.86
COL6A3-212ENST00000491769 LINC01556Q5JQF7 62 aa9.65□□□□□ -0.86
COL6A3-212ENST00000491769 EBI3Q14213 229 aa9.65□□□□□ -0.86
COL6A3-212ENST00000491769 C1orf137Q5JT78 98 aa9.65□□□□□ -0.86
COL6A3-212ENST00000491769 WNK1Q9H4A3 2382 aa9.64□□□□□ -0.87
COL6A3-212ENST00000491769 NDUFA7O95182 113 aa9.64□□□□□ -0.87
COL6A3-212ENST00000491769 NOTCH2Q04721 2471 aa9.64□□□□□ -0.87
COL6A3-212ENST00000491769 LINC00574Q9H8X3 128 aa9.64□□□□□ -0.87
COL6A3-212ENST00000491769 C6orf223Q8N319 242 aa9.63□□□□□ -0.87
COL6A3-212ENST00000491769 FSTL3O95633 263 aa9.62□□□□□ -0.87
COL6A3-212ENST00000491769 ESRGQ1W209 222 aa9.62□□□□□ -0.87
COL6A3-212ENST00000491769 SERP2Q8N6R1 65 aa9.62□□□□□ -0.87
COL6A3-212ENST00000491769 FAM30AQ9NZY2 134 aa9.62□□□□□ -0.87
COL6A3-212ENST00000491769 C2orf16Q68DN1 1984 aa9.62□□□□□ -0.87
COL6A3-212ENST00000491769 ZNF73O43830 326 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-212ENST00000491769 CYSRT1A8MQ03 144 aa9.6□□□□□ -0.87
COL6A3-212ENST00000491769 Q6ZTC4 211 aa9.6□□□□□ -0.87
COL6A3-212ENST00000491769 PTPN13Q12923 2485 aa9.6□□□□□ -0.87
COL6A3-212ENST00000491769 REG3GQ6UW15 175 aa9.6□□□□□ -0.87
COL6A3-212ENST00000491769 OBSL1O75147 1896 aa9.6□□□□□ -0.87
COL6A3-212ENST00000491769 COA6Q5JTJ3 125 aaKnown RBP9.6□□□□□ -0.87
COL6A3-212ENST00000491769 ZNF106Q9H2Y7 1883 aaKnown RBP9.6□□□□□ -0.87
COL6A3-212ENST00000491769 IGHV6-1A0A0B4J1U7 121 aa9.6□□□□□ -0.87
COL6A3-212ENST00000491769 LST1O00453 97 aa9.6□□□□□ -0.87
COL6A3-212ENST00000491769 PLXNB3Q9ULL4 1909 aa9.59□□□□□ -0.87
COL6A3-212ENST00000491769 TRIAP1O43715 76 aa9.59□□□□□ -0.87
COL6A3-212ENST00000491769 TSHBP01222 138 aa9.59□□□□□ -0.87
COL6A3-212ENST00000491769 ATP5EP2Q5VTU8 51 aa9.59□□□□□ -0.87
COL6A3-212ENST00000491769 LINC00337Q8N6G1 96 aa9.59□□□□□ -0.87
COL6A3-212ENST00000491769 SORL1Q92673 2214 aa9.59□□□□□ -0.87
COL6A3-212ENST00000491769 COL4A3Q01955 1670 aa9.59□□□□□ -0.87
COL6A3-212ENST00000491769 A0A1B0GXF2 115 aa9.59□□□□□ -0.87
COL6A3-212ENST00000491769 SONP18583 2426 aaKnown RBP9.58□□□□□ -0.88
COL6A3-212ENST00000491769 SNURFQ9Y675 71 aa9.58□□□□□ -0.88
COL6A3-212ENST00000491769 AVPP01185 164 aa9.58□□□□□ -0.88
COL6A3-212ENST00000491769 CDSNQ15517 529 aa9.58□□□□□ -0.88
COL6A3-212ENST00000491769 MRPL55Q7Z7F7 128 aaKnown RBP9.58□□□□□ -0.88
COL6A3-212ENST00000491769 A6NED7 52 aa9.57□□□□□ -0.88
COL6A3-212ENST00000491769 BDP1A6H8Y1 2624 aa9.57□□□□□ -0.88
COL6A3-212ENST00000491769 IGLV1-40P01703 118 aa9.57□□□□□ -0.88
COL6A3-212ENST00000491769 SPINK1P00995 79 aa9.56□□□□□ -0.88
COL6A3-212ENST00000491769 FAM19A3Q7Z5A8 133 aa9.56□□□□□ -0.88
COL6A3-212ENST00000491769 CRIP1P50238 77 aa9.56□□□□□ -0.88
COL6A3-212ENST00000491769 NDUFV3P56181 108 aaKnown RBP9.56□□□□□ -0.88
COL6A3-212ENST00000491769 BRWD1-AS2P59051 145 aa9.56□□□□□ -0.88
COL6A3-212ENST00000491769 COX17Q14061 63 aa9.56□□□□□ -0.88
COL6A3-212ENST00000491769 SMIM11BQ8TCY0 68 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms