RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 SNAPINO95295 136 aa10.72□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 PRSS47A8MTI9 375 aa10.71□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 C14orf177Q52M58 125 aa10.71□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 UBE2D4Q9Y2X8 147 aa10.71□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.7□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 LOC389332A0A1B0GUA5 103 aa10.7□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 USP17L23D6RBM5 183 aa10.7□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 GCSHP23434 173 aa10.7□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 COX19Q49B96 90 aa10.7□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 DGAT2L7PQ6IED9 249 aa10.7□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 GNB1LQ9BYB4 327 aa10.7□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 CDC42SE2Q9NRR3 84 aa10.7□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 CSDC2Q9Y534 153 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 DNAH5Q8TE73 4624 aa10.69□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 RAB5AP20339 215 aa10.69□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 KIAA1644Q3SXP7 199 aa10.69□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 ZNF664Q8N3J9 261 aa10.69□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 TIMM21Q9BVV7 248 aa10.69□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 CDK2AP2O75956 126 aa10.68□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 LRP1BQ9NZR2 4599 aa10.68□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 GAGE12HA6NDE8 117 aa10.67□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 MT-ND6P03923 174 aa10.67□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 KRTAP10-1P60331 282 aa10.67□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 RPL39P62891 51 aaKnown RBP10.67□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 Q8N8P6 123 aa10.67□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 CHCHD10Q8WYQ3 142 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 LINC00959A0A1B0GUT2 108 aa10.66□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 Q6ZUT4 128 aa10.66□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 SPANXA1Q9NS26 97 aa10.66□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 TGIF2-C20orf24A0A0A6YYL0 155 aa10.65□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 SS18Q15532 418 aa10.65□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 SLC7A5P1Q8MH63 180 aa10.65□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 MRPL18Q9H0U6 180 aaKnown RBP10.65□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 NXT2Q9NPJ8 142 aaKnown RBP10.65□□□□□ -0.7
MSH5-SAPCD1-206ENST00000491552 KIAA1109Q2LD37 5005 aa10.64□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 CCL25O15444 150 aa10.64□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 PRSS1P07477 247 aa10.64□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 RNASE13Q5GAN3 156 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 K7EMI3 77 aa10.63□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 IFI27P40305 119 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 XCL1P47992 114 aa10.63□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 FABP9Q0Z7S8 132 aa10.63□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 FOXI1Q12951 378 aa10.63□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 ORMDL2Q53FV1 153 aa10.63□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 ALKBH7Q9BT30 221 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 MRPS36P82909 103 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 hDV102S1A0JD36 115 aa10.61□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 CFAP161Q6P656 301 aa10.61□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 CYSLTR1Q9Y271 337 aa10.61□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 PYGO1Q9Y3Y4 419 aa10.61□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 TRAV13-1A0A0B4J241 112 aa10.6□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 C1orf196B1AJZ1 125 aa10.6□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 CD164L2Q6UWJ8 174 aa10.6□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 C2orf66Q6UXQ4 117 aa10.6□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 C15orf56Q8N910 161 aa10.6□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 FAM104AQ969W3 186 aa10.6□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 OPRPNQ99935 248 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 TRAPPC1Q9Y5R8 145 aa10.6□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 LINC01620Q4KN68 170 aa10.59□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 PRSS3P2Q8NHM4 247 aa10.59□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 YPEL4Q96NS1 127 aa10.59□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 HERC2O95714 4834 aa10.59□□□□□ -0.71
MSH5-SAPCD1-206ENST00000491552 IGLV4-3A0A075B6K6 122 aa10.58□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 AP5S1Q9NUS5 200 aa10.58□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 APOBP04114 4563 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 IFITM10A6NMD0 228 aa10.57□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 G0S2P27469 103 aa10.57□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 XGP55808 180 aa10.57□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 SMCO4Q9NRQ5 59 aa10.57□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 RYR1P21817 5038 aa10.57□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 IGHV1-58A0A0C4DH39 117 aa10.56□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 LINC01546A6NGU7 62 aa10.56□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 CNBPP62633 177 aaKnown RBP10.56□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 HIGD2BQ4VC39 106 aa10.56□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 CBLN2Q8IUK8 224 aa10.56□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 TMEM141Q96I45 108 aa10.56□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 FAM30AQ9NZY2 134 aa10.56□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 GVQW2A0A096LPI5 108 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 Q6ZSA8 131 aa10.55□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 FA2HQ7L5A8 372 aa10.55□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 C9orf163Q8N9P6 203 aa10.55□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 COX7A2LO14548 114 aa10.54□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 NPSP0C0P6 89 aa10.54□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 Q6ZN92 141 aa10.54□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 TEX43Q6ZNM6 134 aa10.54□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 TOMM6Q96B49 74 aa10.54□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 HSPG2P98160 4391 aa10.54□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.53□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 IGIPA6NJ69 53 aa10.53□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 SLPIP03973 132 aa10.53□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 MALP21145 153 aa10.53□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 HAMPP81172 84 aa10.53□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 C2orf88Q9BSF0 95 aa10.53□□□□□ -0.72
MSH5-SAPCD1-206ENST00000491552 C5orf38Q86SI9 138 aa10.52□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 C18orf32Q8TCD1 76 aa10.52□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 TIMM17AQ99595 171 aa10.52□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 LINC01549A6NIU2 74 aa10.51□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 PAPPA-AS1Q5QFB9 102 aa10.51□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 LINC00173Q6ZV60 143 aa10.51□□□□□ -0.73
MSH5-SAPCD1-206ENST00000491552 Q8N1X5 172 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms