RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	TRBV7-3	A0A075B6L6	115 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	IGKV2D-26	A0A0A0MRZ7	120 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	IGLV5-39	A0A0G2JS06	123 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	GAGE12J	A6NER3	117 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	C11orf86	A6NJI1	115 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247		A8MZ25	164 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247		E9PLD3	99 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247		K7EQD1	137 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	HTN1	P15515	57 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	RPL35A	P18077	110 aa	Known RBP	3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	UBE2D3	P61077	147 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	UBE2D2	P62837	147 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	RPL39	P62891	51 aa	Known RBP	3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	BVES-AS1	Q5T3Y7	98 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	FAM19A3	Q7Z5A8	133 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	DAZ4	Q86SG3	579 aa	Known RBP	3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	SBSPON	Q8IVN8	264 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	MPLKIP	Q8TAP9	179 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	ZNF479	Q96JC4	524 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	DAZ3	Q9NR90	486 aa	Known RBP	3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	CSDC2	Q9Y534	153 aa	Known RBP	3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	F8	P00451	2351 aa		3.92	□□□□□ -1.78
ATG4A-208	ENST00000489247	IGHV3-73	A0A0B4J1V6	119 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247		H7C423	109 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	FLNB	O75369	2602 aa	Known RBP	3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	APOC4	P55056	127 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	SEC11A	P67812	179 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	RPL36A	P83881	106 aa	Known RBP	3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	EGFEM1P	Q0D2K5	195 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	HSD52	Q0P140	79 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	COTL1	Q14019	142 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	TAL2	Q16559	108 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	KRTAP24-1	Q3LI83	254 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	PCP2	Q8IVA1	136 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	GTSF1L	Q9H1H1	148 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	NOP10	Q9NPE3	64 aa	Known RBP	3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247		Q9UF83	564 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	UBE2D4	Q9Y2X8	147 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	TRRAP	Q9Y4A5	3859 aa		3.91	□□□□□ -1.78
ATG4A-208	ENST00000489247	IGHV3OR16-12	A0A075B7B8	117 aa		3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247		A0A1B0GV90	55 aa		3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247	LYRM9	A8MSI8	78 aa		3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247	SMAGP	Q0VAQ4	97 aa		3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247	MPV17L2	Q567V2	206 aa		3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247	TMEM97	Q5BJF2	176 aa		3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247	SLC25A29	Q8N8R3	303 aa		3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247	OR11H2	Q8NH07	326 aa		3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247	ZNRF2	Q8NHG8	242 aa		3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247	ZMAT5	Q9UDW3	170 aa	Known RBP	3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247	JMJD1C	Q15652	2540 aa		3.9	□□□□□ -1.79
ATG4A-208	ENST00000489247	TRBV25-1	A0A075B6N4	114 aa		3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	IGLV5-45	A0A087WSX0	123 aa		3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	TINCR	A0A1B0GVN0	87 aa		3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	ZNF22	P17026	224 aa	Predicted RBP	3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	NMU	P48645	174 aa		3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	HINT1	P49773	126 aa	Predicted RBP	3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	HERVK_113	P61574	105 aa		3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	GAGE1	Q13065	139 aa		3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	NTM-AS1	Q6ZSK4	140 aa		3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	PRADC1	Q9BSG0	188 aa		3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	VCX2	Q9H322	139 aa		3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	TP73-AS1	Q9UF72	201 aa		3.89	□□□□□ -1.79
ATG4A-208	ENST00000489247	TRGV2	A0A075B6R0	118 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	MYMX	A0A1B0GTQ4	84 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	TMEM223	A0PJW6	202 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	TAX1BP3	O14907	124 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	GAGE7	O76087	117 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	GAGE12F	P0CL80	117 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	GAGE12G	P0CL81	117 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	GAGE12I	P0CL82	117 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	MIF	P14174	115 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	ZNF25	P17030	456 aa	Predicted RBP	3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	UBE2D1	P51668	147 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	KRTAP10-6	P60371	365 aa	Predicted RBP	3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	MAPKAPK5-AS1	Q8N8E1	139 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247		Q8NAQ8	132 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	OR5A1	Q8NGJ0	315 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	ORAOV1	Q8WV07	137 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	CHAC1	Q9BUX1	264 aa		3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	NIPBL	Q6KC79	2804 aa	eCLIP	3.88	□□□□□ -1.79
ATG4A-208	ENST00000489247	NACA	E9PAV3	2078 aa		3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	TEX48	A0A1B0GUV7	120 aa		3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247		A0A1B0GWB2	263 aa		3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	IGKV2-29	A2NJV5	120 aa	Predicted RBP	3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	LEPROT	O15243	131 aa		3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	IGHV4-30-4	P0DP06	118 aa		3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247		Q6ZUT4	128 aa		3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	PHLDA1	Q8WV24	401 aa	Predicted RBP	3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	PLEKHB2	Q96CS7	222 aa		3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	OPRPN	Q99935	248 aa	Predicted RBP	3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	SPANXB1	Q9NS25	103 aa	Predicted RBP	3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	ATR	Q13535	2644 aa		3.87	□□□□□ -1.79
ATG4A-208	ENST00000489247	TENM1	Q9UKZ4	2725 aa		3.86	□□□□□ -1.79
ATG4A-208	ENST00000489247	TRAV26-1	A0A087WT03	109 aa		3.86	□□□□□ -1.79
ATG4A-208	ENST00000489247	TRBV6-8	A0A0A6YYG3	113 aa		3.86	□□□□□ -1.79
ATG4A-208	ENST00000489247	TRAV8-6	A0A0B4J262	113 aa		3.86	□□□□□ -1.79
ATG4A-208	ENST00000489247	TRGV4	A0A0C4DH28	118 aa		3.86	□□□□□ -1.79
ATG4A-208	ENST00000489247	IGHV4-28	A0A0C4DH34	117 aa		3.86	□□□□□ -1.79
ATG4A-208	ENST00000489247	IGHV3-38	A0A0C4DH36	116 aa		3.86	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms