RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 TMEM258P61165 79 aa7.68□□□□□ -1.18
CCDC171-208ENST00000486641 SNRPD3P62318 126 aaKnown RBP7.68□□□□□ -1.18
CCDC171-208ENST00000486641 HIST2H2BCQ6DN03 193 aa7.68□□□□□ -1.18
CCDC171-208ENST00000486641 HIST2H2BDQ6DRA6 164 aa7.68□□□□□ -1.18
CCDC171-208ENST00000486641 SERP2Q8N6R1 65 aa7.68□□□□□ -1.18
CCDC171-208ENST00000486641 COPS9Q8WXC6 57 aa7.68□□□□□ -1.18
CCDC171-208ENST00000486641 DOPEY2Q9Y3R5 2298 aa7.68□□□□□ -1.18
CCDC171-208ENST00000486641 TRAV25A0A0B4J276 109 aa7.67□□□□□ -1.18
CCDC171-208ENST00000486641 LINC00242Q5T6M2 205 aa7.67□□□□□ -1.18
CCDC171-208ENST00000486641 DSCR8Q96T75 97 aa7.67□□□□□ -1.18
CCDC171-208ENST00000486641 C14orf132Q9NPU4 83 aa7.67□□□□□ -1.18
CCDC171-208ENST00000486641 OTOGLQ3ZCN5 2332 aa7.67□□□□□ -1.18
CCDC171-208ENST00000486641 TTC28Q96AY4 2481 aa7.67□□□□□ -1.18
CCDC171-208ENST00000486641 K7EQG2 157 aa7.67□□□□□ -1.18
CCDC171-208ENST00000486641 IGLV1-40P01703 118 aa7.67□□□□□ -1.18
CCDC171-208ENST00000486641 LINC00846Q9NV44 126 aa7.67□□□□□ -1.18
CCDC171-208ENST00000486641 A0A1W2PPR1 153 aa7.66□□□□□ -1.18
CCDC171-208ENST00000486641 SMIM1B2RUZ4 78 aa7.66□□□□□ -1.18
CCDC171-208ENST00000486641 DNAL4O96015 105 aa7.66□□□□□ -1.18
CCDC171-208ENST00000486641 C4orf26Q17RF5 130 aa7.66□□□□□ -1.18
CCDC171-208ENST00000486641 DGAT2L7PQ6IED9 249 aa7.66□□□□□ -1.18
CCDC171-208ENST00000486641 LINC01561Q8N1V8 128 aa7.66□□□□□ -1.18
CCDC171-208ENST00000486641 BPESC1Q9GZL8 116 aa7.66□□□□□ -1.18
CCDC171-208ENST00000486641 SORL1Q92673 2214 aa7.66□□□□□ -1.18
CCDC171-208ENST00000486641 RPL28P46779 137 aaKnown RBP7.66□□□□□ -1.18
CCDC171-208ENST00000486641 PRORYQ9H606 182 aa7.66□□□□□ -1.18
CCDC171-208ENST00000486641 A0A087WYN8 130 aa7.65□□□□□ -1.18
CCDC171-208ENST00000486641 Q6JHZ5 121 aa7.65□□□□□ -1.18
CCDC171-208ENST00000486641 COL6A6A6NMZ7 2263 aa7.65□□□□□ -1.19
CCDC171-208ENST00000486641 VPS13CQ709C8 3753 aa7.65□□□□□ -1.19
CCDC171-208ENST00000486641 PTPRZ1P23471 2315 aaPredicted RBP7.64□□□□□ -1.19
CCDC171-208ENST00000486641 SYNJ2BPP57105 145 aa7.64□□□□□ -1.19
CCDC171-208ENST00000486641 ZNF415Q09FC8 603 aa7.64□□□□□ -1.19
CCDC171-208ENST00000486641 PIMREGQ9BSJ6 248 aa7.64□□□□□ -1.19
CCDC171-208ENST00000486641 USP17L23D6RBM5 183 aa7.63□□□□□ -1.19
CCDC171-208ENST00000486641 H3BUX3 64 aa7.63□□□□□ -1.19
CCDC171-208ENST00000486641 Q5XG85 94 aa7.63□□□□□ -1.19
CCDC171-208ENST00000486641 LINC00337Q8N6G1 96 aa7.63□□□□□ -1.19
CCDC171-208ENST00000486641 RNF152Q8N8N0 203 aa7.63□□□□□ -1.19
CCDC171-208ENST00000486641 TRAV13-2A0A0B4J235 113 aa7.63□□□□□ -1.19
CCDC171-208ENST00000486641 OBSCN-AS1Q96MR7 158 aa7.63□□□□□ -1.19
CCDC171-208ENST00000486641 IGKV2-28A0A075B6P5 120 aa7.62□□□□□ -1.19
CCDC171-208ENST00000486641 IGKV2D-28P01615 120 aa7.62□□□□□ -1.19
CCDC171-208ENST00000486641 ADORA2A-AS1P86434 159 aa7.62□□□□□ -1.19
CCDC171-208ENST00000486641 HRCT1Q6UXD1 115 aa7.62□□□□□ -1.19
CCDC171-208ENST00000486641 A6NDX4 124 aa7.62□□□□□ -1.19
CCDC171-208ENST00000486641 IGHV3-53P01767 116 aa7.62□□□□□ -1.19
CCDC171-208ENST00000486641 PF4P02776 101 aa7.62□□□□□ -1.19
CCDC171-208ENST00000486641 CFHR3Q02985 330 aa7.62□□□□□ -1.19
CCDC171-208ENST00000486641 SMIM11BQ8TCY0 68 aa7.62□□□□□ -1.19
CCDC171-208ENST00000486641 F5H768 121 aa7.61□□□□□ -1.19
CCDC171-208ENST00000486641 CRPP02741 224 aa7.61□□□□□ -1.19
CCDC171-208ENST00000486641 IGHV4-38-2P0DP08 117 aa7.61□□□□□ -1.19
CCDC171-208ENST00000486641 FAM19A3Q7Z5A8 133 aa7.61□□□□□ -1.19
CCDC171-208ENST00000486641 COL12A1Q99715 3063 aa7.61□□□□□ -1.19
CCDC171-208ENST00000486641 NCR3O14931 201 aa7.61□□□□□ -1.19
CCDC171-208ENST00000486641 C10orf99Q6UWK7 81 aa7.61□□□□□ -1.19
CCDC171-208ENST00000486641 FHL2Q14192 279 aa7.6□□□□□ -1.19
CCDC171-208ENST00000486641 Q96MF0 132 aa7.6□□□□□ -1.19
CCDC171-208ENST00000486641 OVOL2Q9BRP0 275 aa7.6□□□□□ -1.19
CCDC171-208ENST00000486641 SPTAN1Q13813 2472 aaKnown RBP7.59□□□□□ -1.19
CCDC171-208ENST00000486641 MIR7-3HGQ8N6C7 128 aa7.59□□□□□ -1.19
CCDC171-208ENST00000486641 SND1-IT1Q9HBX3 110 aa7.59□□□□□ -1.19
CCDC171-208ENST00000486641 TLN1Q9Y490 2541 aaKnown RBP7.59□□□□□ -1.19
CCDC171-208ENST00000486641 LECT2O14960 151 aa7.58□□□□□ -1.2
CCDC171-208ENST00000486641 SLPIP03973 132 aa7.58□□□□□ -1.2
CCDC171-208ENST00000486641 PSMB8P28062 276 aa7.58□□□□□ -1.2
CCDC171-208ENST00000486641 HILS1P60008 231 aa7.58□□□□□ -1.2
CCDC171-208ENST00000486641 C10orf105Q8TEF2 133 aa7.58□□□□□ -1.2
CCDC171-208ENST00000486641 ABCA2Q9BZC7 2435 aa7.58□□□□□ -1.2
CCDC171-208ENST00000486641 CRYBG3Q68DQ2 2970 aa7.58□□□□□ -1.2
CCDC171-208ENST00000486641 RBMY1BA6NDE4 496 aaKnown RBP7.58□□□□□ -1.2
CCDC171-208ENST00000486641 RBMY1EA6NEQ0 496 aaKnown RBP7.58□□□□□ -1.2
CCDC171-208ENST00000486641 RBMY1DP0C7P1 496 aaKnown RBP7.58□□□□□ -1.2
CCDC171-208ENST00000486641 H0YGX0 51 aa7.57□□□□□ -1.2
CCDC171-208ENST00000486641 DEFB131AP59861 70 aa7.57□□□□□ -1.2
CCDC171-208ENST00000486641 C11orf72Q8NBR9 251 aa7.57□□□□□ -1.2
CCDC171-208ENST00000486641 WFDC9Q8NEX5 89 aa7.57□□□□□ -1.2
CCDC171-208ENST00000486641 PTPRQQ9UMZ3 2332 aa7.57□□□□□ -1.2
CCDC171-208ENST00000486641 NTM-AS1Q6ZSK4 140 aa7.56□□□□□ -1.2
CCDC171-208ENST00000486641 CDC42SE2Q9NRR3 84 aa7.56□□□□□ -1.2
CCDC171-208ENST00000486641 AKAP6Q13023 2319 aa7.56□□□□□ -1.2
CCDC171-208ENST00000486641 NBL1P41271 181 aa7.56□□□□□ -1.2
CCDC171-208ENST00000486641 RPL36AP83881 106 aaKnown RBP7.56□□□□□ -1.2
CCDC171-208ENST00000486641 RPL36ALQ969Q0 106 aaKnown RBP7.56□□□□□ -1.2
CCDC171-208ENST00000486641 GHRHP01286 108 aa7.55□□□□□ -1.2
CCDC171-208ENST00000486641 CCKP06307 115 aa7.55□□□□□ -1.2
CCDC171-208ENST00000486641 SS18Q15532 418 aa7.55□□□□□ -1.2
CCDC171-208ENST00000486641 ZNF292O60281 2723 aa7.55□□□□□ -1.2
CCDC171-208ENST00000486641 TRAV23DV6A0A075B6W5 121 aa7.55□□□□□ -1.2
CCDC171-208ENST00000486641 CCL18P55774 89 aa7.55□□□□□ -1.2
CCDC171-208ENST00000486641 LINC00158P58513 81 aa7.55□□□□□ -1.2
CCDC171-208ENST00000486641 NBASA2RRP1 2371 aa7.54□□□□□ -1.2
CCDC171-208ENST00000486641 COX7B2Q8TF08 81 aa7.54□□□□□ -1.2
CCDC171-208ENST00000486641 TOMM7Q9P0U1 55 aa7.54□□□□□ -1.2
CCDC171-208ENST00000486641 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.54□□□□□ -1.2
CCDC171-208ENST00000486641 TMEM89A2RUT3 159 aa7.53□□□□□ -1.2
CCDC171-208ENST00000486641 A8MTW9 85 aa7.53□□□□□ -1.2
CCDC171-208ENST00000486641 K7ENP7 123 aa7.53□□□□□ -1.2
CCDC171-208ENST00000486641 NDUFC2O95298 119 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms