RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 MRPL51Q4U2R6 128 aaKnown RBP5.41□□□□□ -1.54
USP40-216ENST00000485943 IMMP2LQ96T52 175 aa5.41□□□□□ -1.54
USP40-216ENST00000485943 C20orf78Q9BR46 151 aa5.41□□□□□ -1.54
USP40-216ENST00000485943 TMEM70Q9BUB7 260 aa5.41□□□□□ -1.54
USP40-216ENST00000485943 KMT2AQ03164 3969 aa5.4□□□□□ -1.54
USP40-216ENST00000485943 TRAV9-1A0A075B6T8 112 aa5.4□□□□□ -1.54
USP40-216ENST00000485943 A0A087WTM6 91 aa5.4□□□□□ -1.54
USP40-216ENST00000485943 FGF6P10767 208 aa5.4□□□□□ -1.54
USP40-216ENST00000485943 G0S2P27469 103 aa5.4□□□□□ -1.54
USP40-216ENST00000485943 CFAP161Q6P656 301 aa5.4□□□□□ -1.54
USP40-216ENST00000485943 NTM-AS1Q6ZSK4 140 aa5.4□□□□□ -1.54
USP40-216ENST00000485943 BAALCQ8WXS3 180 aa5.4□□□□□ -1.54
USP40-216ENST00000485943 SMCO4Q9NRQ5 59 aa5.4□□□□□ -1.54
USP40-216ENST00000485943 TRBV6-5A0A0K0K1A5 114 aa5.39□□□□□ -1.55
USP40-216ENST00000485943 A0A1B0GUV1 79 aa5.39□□□□□ -1.55
USP40-216ENST00000485943 PHOX2AO14813 284 aa5.39□□□□□ -1.55
USP40-216ENST00000485943 IFI27P40305 119 aaPredicted RBP5.39□□□□□ -1.55
USP40-216ENST00000485943 Q6ZN92 141 aa5.39□□□□□ -1.55
USP40-216ENST00000485943 PRSS3P2Q8NHM4 247 aa5.39□□□□□ -1.55
USP40-216ENST00000485943 NTN5Q8WTR8 489 aaPredicted RBP5.39□□□□□ -1.55
USP40-216ENST00000485943 RNF185Q96GF1 192 aa5.39□□□□□ -1.55
USP40-216ENST00000485943 SMIM2Q9BVW6 85 aa5.39□□□□□ -1.55
USP40-216ENST00000485943 LAMTOR2Q9Y2Q5 125 aa5.39□□□□□ -1.55
USP40-216ENST00000485943 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.38□□□□□ -1.55
USP40-216ENST00000485943 TRBV27A0A0K0K1C4 114 aa5.38□□□□□ -1.55
USP40-216ENST00000485943 MT-ND6P03923 174 aa5.38□□□□□ -1.55
USP40-216ENST00000485943 RPS10P46783 165 aaKnown RBP5.38□□□□□ -1.55
USP40-216ENST00000485943 FABP9Q0Z7S8 132 aa5.38□□□□□ -1.55
USP40-216ENST00000485943 Q8N814 137 aa5.38□□□□□ -1.55
USP40-216ENST00000485943 DPH3Q96FX2 82 aa5.38□□□□□ -1.55
USP40-216ENST00000485943 DNAH1Q9P2D7 4330 aa5.38□□□□□ -1.55
USP40-216ENST00000485943 IGLV4-60A0A075B6I1 120 aa5.37□□□□□ -1.55
USP40-216ENST00000485943 A0A1B0GXF2 115 aa5.37□□□□□ -1.55
USP40-216ENST00000485943 hDV102S1A0JD36 115 aa5.37□□□□□ -1.55
USP40-216ENST00000485943 NPYP01303 97 aa5.37□□□□□ -1.55
USP40-216ENST00000485943 ADCYAP1P18509 176 aa5.37□□□□□ -1.55
USP40-216ENST00000485943 ORMDL2Q53FV1 153 aa5.37□□□□□ -1.55
USP40-216ENST00000485943 Q6ZRN7 208 aaPredicted RBP5.37□□□□□ -1.55
USP40-216ENST00000485943 C2orf88Q9BSF0 95 aa5.37□□□□□ -1.55
USP40-216ENST00000485943 NXT2Q9NPJ8 142 aaKnown RBP5.37□□□□□ -1.55
USP40-216ENST00000485943 CARHSP1Q9Y2V2 147 aaKnown RBP5.37□□□□□ -1.55
USP40-216ENST00000485943 TRAV13-1A0A0B4J241 112 aa5.36□□□□□ -1.55
USP40-216ENST00000485943 TSHBP01222 138 aa5.36□□□□□ -1.55
USP40-216ENST00000485943 XCL1P47992 114 aa5.36□□□□□ -1.55
USP40-216ENST00000485943 POLR2KP53803 58 aaKnown RBP5.36□□□□□ -1.55
USP40-216ENST00000485943 PAPPA-AS1Q5QFB9 102 aa5.36□□□□□ -1.55
USP40-216ENST00000485943 ENHOQ6UWT2 76 aa5.36□□□□□ -1.55
USP40-216ENST00000485943 FA2HQ7L5A8 372 aa5.36□□□□□ -1.55
USP40-216ENST00000485943 CYSLTR1Q9Y271 337 aa5.36□□□□□ -1.55
USP40-216ENST00000485943 TRAPPC1Q9Y5R8 145 aa5.36□□□□□ -1.55
USP40-216ENST00000485943 VPS13DQ5THJ4 4388 aa5.36□□□□□ -1.55
USP40-216ENST00000485943 TRBV24-1A0A075B6N3 115 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 A0A1B0GVY2 172 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 C1orf196B1AJZ1 125 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 USP17L23D6RBM5 183 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 APOMO95445 188 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 KIAA1644Q3SXP7 199 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 ZNF664Q8N3J9 261 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 NRACQ8N912 160 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 C20orf203Q8NBC4 194 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 CHCHD10Q8WYQ3 142 aaPredicted RBP5.35□□□□□ -1.55
USP40-216ENST00000485943 GNB1LQ9BYB4 327 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 PKIGQ9Y2B9 76 aa5.35□□□□□ -1.55
USP40-216ENST00000485943 DNAH6Q9C0G6 4158 aa5.34□□□□□ -1.55
USP40-216ENST00000485943 IFITM10A6NMD0 228 aa5.34□□□□□ -1.55
USP40-216ENST00000485943 K7EMI3 77 aa5.34□□□□□ -1.55
USP40-216ENST00000485943 CCL25O15444 150 aa5.34□□□□□ -1.55
USP40-216ENST00000485943 GAS8-AS1O95177 125 aa5.34□□□□□ -1.55
USP40-216ENST00000485943 RPL32P62910 135 aaKnown RBP5.34□□□□□ -1.55
USP40-216ENST00000485943 TEX43Q6ZNM6 134 aa5.34□□□□□ -1.55
USP40-216ENST00000485943 Q8N8P6 123 aa5.34□□□□□ -1.55
USP40-216ENST00000485943 SPANXA1Q9NS26 97 aa5.34□□□□□ -1.55
USP40-216ENST00000485943 PRR34Q9NV39 138 aa5.34□□□□□ -1.55
USP40-216ENST00000485943 TGIF2-C20orf24A0A0A6YYL0 155 aa5.33□□□□□ -1.56
USP40-216ENST00000485943 LINC01549A6NIU2 74 aa5.33□□□□□ -1.56
USP40-216ENST00000485943 ESDP10768 282 aa5.33□□□□□ -1.56
USP40-216ENST00000485943 FUSP35637 526 aaKnown RBP eCLIP5.33□□□□□ -1.56
USP40-216ENST00000485943 KRTAP10-2P60368 255 aa5.33□□□□□ -1.56
USP40-216ENST00000485943 RAB5BP61020 215 aa5.33□□□□□ -1.56
USP40-216ENST00000485943 RNASE13Q5GAN3 156 aaKnown RBP5.33□□□□□ -1.56
USP40-216ENST00000485943 MRPL52Q86TS9 123 aaKnown RBP5.33□□□□□ -1.56
USP40-216ENST00000485943 VCX2Q9H322 139 aa5.33□□□□□ -1.56
USP40-216ENST00000485943 LINC00959A0A1B0GUT2 108 aa5.32□□□□□ -1.56
USP40-216ENST00000485943 COX7A2LO14548 114 aa5.32□□□□□ -1.56
USP40-216ENST00000485943 RPL39P62891 51 aaKnown RBP5.32□□□□□ -1.56
USP40-216ENST00000485943 HIGD2BQ4VC39 106 aa5.32□□□□□ -1.56
USP40-216ENST00000485943 C2orf66Q6UXQ4 117 aa5.32□□□□□ -1.56
USP40-216ENST00000485943 TMEM141Q96I45 108 aa5.32□□□□□ -1.56
USP40-216ENST00000485943 CDC42SE2Q9NRR3 84 aa5.32□□□□□ -1.56
USP40-216ENST00000485943 UBE2D4Q9Y2X8 147 aa5.32□□□□□ -1.56
USP40-216ENST00000485943 IGHV1-58A0A0C4DH39 117 aa5.31□□□□□ -1.56
USP40-216ENST00000485943 LRCOL1A6NCL2 159 aa5.31□□□□□ -1.56
USP40-216ENST00000485943 NDUFA6P56556 154 aa5.31□□□□□ -1.56
USP40-216ENST00000485943 C10orf91Q5T1B1 145 aa5.31□□□□□ -1.56
USP40-216ENST00000485943 CD164L2Q6UWJ8 174 aa5.31□□□□□ -1.56
USP40-216ENST00000485943 Q6ZUT4 128 aa5.31□□□□□ -1.56
USP40-216ENST00000485943 MAPKAPK5-AS1Q8N8E1 139 aa5.31□□□□□ -1.56
USP40-216ENST00000485943 PACRGQ96M98 296 aaPredicted RBP5.31□□□□□ -1.56
USP40-216ENST00000485943 SCGB3A1Q96QR1 104 aa5.31□□□□□ -1.56
USP40-216ENST00000485943 TIMM21Q9BVV7 248 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms