RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 KRTAP4-16G5E9R7 235 aaPredicted RBP3.66□□□□□ -1.82
CCDC39-205ENST00000485055 H3BT86 120 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 GIG44P09565 113 aaPredicted RBP3.66□□□□□ -1.82
CCDC39-205ENST00000485055 MIFP14174 115 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 FAUP35544 74 aaKnown RBP3.66□□□□□ -1.82
CCDC39-205ENST00000485055 MIC13Q5XKP0 118 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 EIF5AL1Q6IS14 154 aaKnown RBP3.66□□□□□ -1.82
CCDC39-205ENST00000485055 PHF5AQ7RTV0 110 aaKnown RBP3.66□□□□□ -1.82
CCDC39-205ENST00000485055 RHPN1-AS1Q9BWJ2 59 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 NPCDR1Q9BY65 106 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 LINC00588Q9Y4M8 146 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 SORL1Q92673 2214 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 IGHV3-35A0A0C4DH35 117 aa3.65□□□□□ -1.82
CCDC39-205ENST00000485055 TMEM262E9PQX1 116 aa3.65□□□□□ -1.82
CCDC39-205ENST00000485055 TRACP01848 142 aa3.65□□□□□ -1.82
CCDC39-205ENST00000485055 HLA-DMBP28068 263 aa3.65□□□□□ -1.82
CCDC39-205ENST00000485055 RNASE4P34096 147 aaKnown RBP3.65□□□□□ -1.82
CCDC39-205ENST00000485055 ZNF79Q15937 498 aa3.65□□□□□ -1.82
CCDC39-205ENST00000485055 SOSTDC1Q6X4U4 206 aa3.65□□□□□ -1.82
CCDC39-205ENST00000485055 SPATA12Q7Z6I5 190 aa3.65□□□□□ -1.82
CCDC39-205ENST00000485055 SHANK2-AS3Q9BTD1 123 aa3.65□□□□□ -1.82
CCDC39-205ENST00000485055 HHLA3Q9XRX5 114 aa3.65□□□□□ -1.82
CCDC39-205ENST00000485055 KMT2CQ8NEZ4 4911 aaKnown RBP3.65□□□□□ -1.82
CCDC39-205ENST00000485055 C7orf66A4D0T2 115 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 S100A4P26447 101 aaKnown RBP3.65□□□□□ -1.83
CCDC39-205ENST00000485055 HINT1P49773 126 aaPredicted RBP3.65□□□□□ -1.83
CCDC39-205ENST00000485055 CYCSP99999 105 aaKnown RBP3.65□□□□□ -1.83
CCDC39-205ENST00000485055 CSMD3Q7Z407 3707 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 VPS13DQ5THJ4 4388 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 IGKV1D-37A0A075B6S9 117 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 K7EP34 96 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 SFT2D2O95562 160 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 CFC1BP0CG36 223 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 NPPCP23582 126 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 MPV17L2Q567V2 206 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 SLC25A29Q8N8R3 303 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 Q8NAQ8 132 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 LINC00467Q9BRT7 94 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 C11orf1Q9H5F2 150 aa3.65□□□□□ -1.83
CCDC39-205ENST00000485055 RYR3Q15413 4870 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 DNAH17Q9UFH2 4485 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 STARD9Q9P2P6 4700 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 RBAKDNA6NC62 111 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 CRYGAP11844 174 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 TAS2R45P59539 299 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 NANOS2P60321 138 aaKnown RBP3.64□□□□□ -1.83
CCDC39-205ENST00000485055 GFI1BQ5VTD9 330 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 PLECQ15149 4684 aaKnown RBP3.64□□□□□ -1.83
CCDC39-205ENST00000485055 PMS2P5A8MQ11 134 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 ZNF705FA8MVS1 300 aaPredicted RBP3.64□□□□□ -1.83
CCDC39-205ENST00000485055 LEPROTO15243 131 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 ZNF705BP0CI00 300 aaPredicted RBP3.64□□□□□ -1.83
CCDC39-205ENST00000485055 CXCL5P42830 114 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 HERVK_113P61574 105 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 FAM104BQ5XKR9 115 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 MPLKIPQ8TAP9 179 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 C20orf78Q9BR46 151 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 C8orf17Q9NRJ1 99 aa3.64□□□□□ -1.83
CCDC39-205ENST00000485055 NDUFB6O95139 128 aa3.63□□□□□ -1.83
CCDC39-205ENST00000485055 FP248Q71RG6 208 aaPredicted RBP3.63□□□□□ -1.83
CCDC39-205ENST00000485055 ODF3Q96PU9 254 aa3.63□□□□□ -1.83
CCDC39-205ENST00000485055 CHAC1Q9BUX1 264 aa3.63□□□□□ -1.83
CCDC39-205ENST00000485055 TP53TG3Q9ULZ0 132 aa3.63□□□□□ -1.83
CCDC39-205ENST00000485055 IGHV3-74A0A0B4J1X5 117 aa3.63□□□□□ -1.83
CCDC39-205ENST00000485055 M0R2P5 195 aa3.63□□□□□ -1.83
CCDC39-205ENST00000485055 Q0VG73 95 aa3.63□□□□□ -1.83
CCDC39-205ENST00000485055 MRPL36Q9P0J6 103 aaKnown RBP3.63□□□□□ -1.83
CCDC39-205ENST00000485055 UQCR10Q9UDW1 63 aa3.63□□□□□ -1.83
CCDC39-205ENST00000485055 APLNQ9ULZ1 77 aa3.63□□□□□ -1.83
CCDC39-205ENST00000485055 LSM3P62310 102 aaKnown RBP3.62□□□□□ -1.83
CCDC39-205ENST00000485055 CCL20P78556 96 aa3.62□□□□□ -1.83
CCDC39-205ENST00000485055 SLC39A9Q9NUM3 307 aa3.62□□□□□ -1.83
CCDC39-205ENST00000485055 IGLV8-61A0A075B6I0 122 aa3.62□□□□□ -1.83
CCDC39-205ENST00000485055 ZNF876PQ49A33 203 aa3.62□□□□□ -1.83
CCDC39-205ENST00000485055 LINC00612Q8N6U2 182 aa3.62□□□□□ -1.83
CCDC39-205ENST00000485055 Q8NBF4 154 aa3.62□□□□□ -1.83
CCDC39-205ENST00000485055 SLC35B3Q9H1N7 401 aa3.62□□□□□ -1.83
CCDC39-205ENST00000485055 RABAC1Q9UI14 185 aa3.62□□□□□ -1.83
CCDC39-205ENST00000485055 G3V3Q6 166 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 H3BMM0 161 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 HIST1H2BKO60814 126 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 IGHV3-23P01764 117 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 HIST1H2BJP06899 126 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 APELAP0DMC3 54 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 C10orf91Q5T1B1 145 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 C7orf65Q6ZTY9 151 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 OPRPNQ99935 248 aaPredicted RBP3.61□□□□□ -1.83
CCDC39-205ENST00000485055 PHLDA3Q9Y5J5 127 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 SERP1Q9Y6X1 66 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 OSTCQ9NRP0 149 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 H3BNG1 76 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 H3BRN7 92 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 SNCGO76070 127 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 TCL1BO95988 128 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 IL5P05113 134 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 ZNF688P0C7X2 276 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 LUZP6Q538Z0 58 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 C7orf33Q8WU49 177 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 GTSF1Q8WW33 167 aa3.61□□□□□ -1.83
CCDC39-205ENST00000485055 DNAH10Q8IVF4 4471 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms