RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 IFI27P40305 119 aaPredicted RBP13.12□□□□□ -0.31
LIME1-205ENST00000480139 ORMDL2Q53FV1 153 aa13.12□□□□□ -0.31
LIME1-205ENST00000480139 CDC42SE2Q9NRR3 84 aa13.12□□□□□ -0.31
LIME1-205ENST00000480139 LRCOL1A6NCL2 159 aa13.11□□□□□ -0.31
LIME1-205ENST00000480139 EREGO14944 169 aa13.11□□□□□ -0.31
LIME1-205ENST00000480139 DGAT2L7PQ6IED9 249 aa13.11□□□□□ -0.31
LIME1-205ENST00000480139 LINC01546A6NGU7 62 aa13.1□□□□□ -0.31
LIME1-205ENST00000480139 RPL39P62891 51 aaKnown RBP13.1□□□□□ -0.31
LIME1-205ENST00000480139 ZNF664Q8N3J9 261 aa13.1□□□□□ -0.31
LIME1-205ENST00000480139 SPANXA1Q9NS26 97 aa13.1□□□□□ -0.31
LIME1-205ENST00000480139 KRTAP26-1Q6PEX3 210 aa13.09□□□□□ -0.31
LIME1-205ENST00000480139 MAPKAPK5-AS1Q8N8E1 139 aa13.09□□□□□ -0.31
LIME1-205ENST00000480139 PRSS3P2Q8NHM4 247 aa13.09□□□□□ -0.31
LIME1-205ENST00000480139 PYGO1Q9Y3Y4 419 aa13.08□□□□□ -0.32
LIME1-205ENST00000480139 G0S2P27469 103 aa13.07□□□□□ -0.32
LIME1-205ENST00000480139 CYSLTR1Q9Y271 337 aa13.07□□□□□ -0.32
LIME1-205ENST00000480139 COLCA2A8K830 154 aa13.06□□□□□ -0.32
LIME1-205ENST00000480139 MRPS36P82909 103 aaKnown RBP13.06□□□□□ -0.32
LIME1-205ENST00000480139 C18orf32Q8TCD1 76 aa13.06□□□□□ -0.32
LIME1-205ENST00000480139 DNAH11Q96DT5 4516 aa13.05□□□□□ -0.32
LIME1-205ENST00000480139 IGLV10-54A0A075B6I4 117 aa13.05□□□□□ -0.32
LIME1-205ENST00000480139 C2orf66Q6UXQ4 117 aa13.05□□□□□ -0.32
LIME1-205ENST00000480139 Q6ZUT4 128 aa13.05□□□□□ -0.32
LIME1-205ENST00000480139 LINC00959A0A1B0GUT2 108 aa13.04□□□□□ -0.32
LIME1-205ENST00000480139 CCL25O15444 150 aa13.04□□□□□ -0.32
LIME1-205ENST00000480139 NPSP0C0P6 89 aa13.04□□□□□ -0.32
LIME1-205ENST00000480139 SPATA12Q7Z6I5 190 aa13.04□□□□□ -0.32
LIME1-205ENST00000480139 FAM104AQ969W3 186 aa13.04□□□□□ -0.32
LIME1-205ENST00000480139 IGKV3OR2-268A0A0C4DH90 116 aa13.03□□□□□ -0.32
LIME1-205ENST00000480139 LINC01549A6NIU2 74 aa13.03□□□□□ -0.32
LIME1-205ENST00000480139 WFDC2Q14508 124 aa13.03□□□□□ -0.32
LIME1-205ENST00000480139 FA2HQ7L5A8 372 aa13.03□□□□□ -0.32
LIME1-205ENST00000480139 Q8N814 137 aa13.03□□□□□ -0.32
LIME1-205ENST00000480139 BAALCQ8WXS3 180 aa13.03□□□□□ -0.32
LIME1-205ENST00000480139 SS18Q15532 418 aa13.02□□□□□ -0.33
LIME1-205ENST00000480139 CDPF1Q6NVV7 123 aa13.02□□□□□ -0.33
LIME1-205ENST00000480139 CHCHD10Q8WYQ3 142 aaPredicted RBP13.02□□□□□ -0.33
LIME1-205ENST00000480139 TOMM6Q96B49 74 aa13.02□□□□□ -0.33
LIME1-205ENST00000480139 PGPEP1Q9NXJ5 209 aa13.02□□□□□ -0.33
LIME1-205ENST00000480139 SCO1O75880 301 aa13.01□□□□□ -0.33
LIME1-205ENST00000480139 S100A1P23297 94 aa13.01□□□□□ -0.33
LIME1-205ENST00000480139 KRTAP10-2P60368 255 aa13.01□□□□□ -0.33
LIME1-205ENST00000480139 NTN5Q8WTR8 489 aaPredicted RBP13.01□□□□□ -0.33
LIME1-205ENST00000480139 AP5S1Q9NUS5 200 aa13.01□□□□□ -0.33
LIME1-205ENST00000480139 IGLV4-3A0A075B6K6 122 aa13□□□□□ -0.33
LIME1-205ENST00000480139 C1orf196B1AJZ1 125 aa13□□□□□ -0.33
LIME1-205ENST00000480139 LECT2O14960 151 aa13□□□□□ -0.33
LIME1-205ENST00000480139 TRGC2P03986 189 aa13□□□□□ -0.33
LIME1-205ENST00000480139 RAB5BP61020 215 aa13□□□□□ -0.33
LIME1-205ENST00000480139 C14orf177Q52M58 125 aa13□□□□□ -0.33
LIME1-205ENST00000480139 RNASE13Q5GAN3 156 aaKnown RBP13□□□□□ -0.33
LIME1-205ENST00000480139 URB1-AS1Q96HZ7 61 aa13□□□□□ -0.33
LIME1-205ENST00000480139 GAGE12HA6NDE8 117 aa12.99□□□□□ -0.33
LIME1-205ENST00000480139 IGIPA6NJ69 53 aa12.99□□□□□ -0.33
LIME1-205ENST00000480139 LINC00614P0C842 121 aa12.99□□□□□ -0.33
LIME1-205ENST00000480139 TMEM141Q96I45 108 aa12.99□□□□□ -0.33
LIME1-205ENST00000480139 TIMM17AQ99595 171 aa12.99□□□□□ -0.33
LIME1-205ENST00000480139 OPRPNQ99935 248 aaPredicted RBP12.99□□□□□ -0.33
LIME1-205ENST00000480139 PKHD1P08F94 4074 aa12.98□□□□□ -0.33
LIME1-205ENST00000480139 USP17L23D6RBM5 183 aa12.97□□□□□ -0.33
LIME1-205ENST00000480139 ATP6V1G1O75348 118 aa12.97□□□□□ -0.33
LIME1-205ENST00000480139 XCL1P47992 114 aa12.97□□□□□ -0.33
LIME1-205ENST00000480139 FOXI1Q12951 378 aa12.97□□□□□ -0.33
LIME1-205ENST00000480139 CD164L2Q6UWJ8 174 aa12.97□□□□□ -0.33
LIME1-205ENST00000480139 ERASQ7Z444 233 aa12.97□□□□□ -0.33
LIME1-205ENST00000480139 TRAV13-1A0A0B4J241 112 aa12.96□□□□□ -0.33
LIME1-205ENST00000480139 PAPPA-AS1Q5QFB9 102 aa12.96□□□□□ -0.33
LIME1-205ENST00000480139 Q6ZN92 141 aa12.96□□□□□ -0.33
LIME1-205ENST00000480139 IFITM10A6NMD0 228 aa12.95□□□□□ -0.34
LIME1-205ENST00000480139 C16orf90A8MZG2 172 aa12.95□□□□□ -0.34
LIME1-205ENST00000480139 TEX43Q6ZNM6 134 aa12.95□□□□□ -0.34
LIME1-205ENST00000480139 AMELXQ99217 191 aa12.95□□□□□ -0.34
LIME1-205ENST00000480139 CHCHD1Q96BP2 118 aaKnown RBP12.94□□□□□ -0.34
LIME1-205ENST00000480139 SCGB3A1Q96QR1 104 aa12.94□□□□□ -0.34
LIME1-205ENST00000480139 BIRC6Q9NR09 4857 aa12.94□□□□□ -0.34
LIME1-205ENST00000480139 A0A096LNJ9 63 aa12.93□□□□□ -0.34
LIME1-205ENST00000480139 CFAP161Q6P656 301 aa12.93□□□□□ -0.34
LIME1-205ENST00000480139 LINC00173Q6ZV60 143 aa12.93□□□□□ -0.34
LIME1-205ENST00000480139 C2orf88Q9BSF0 95 aa12.93□□□□□ -0.34
LIME1-205ENST00000480139 VCX2Q9H322 139 aa12.93□□□□□ -0.34
LIME1-205ENST00000480139 IGLV5-52A0A0A0MRZ9 124 aa12.92□□□□□ -0.34
LIME1-205ENST00000480139 HBDP02042 147 aa12.92□□□□□ -0.34
LIME1-205ENST00000480139 DYNC1H1Q14204 4646 aaKnown RBP12.92□□□□□ -0.34
LIME1-205ENST00000480139 DNAH5Q8TE73 4624 aa12.91□□□□□ -0.34
LIME1-205ENST00000480139 PRSS1P07477 247 aa12.91□□□□□ -0.34
LIME1-205ENST00000480139 C15orf56Q8N910 161 aa12.91□□□□□ -0.34
LIME1-205ENST00000480139 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.9□□□□□ -0.34
LIME1-205ENST00000480139 UBE2D1P51668 147 aa12.9□□□□□ -0.34
LIME1-205ENST00000480139 COX7A2LO14548 114 aa12.89□□□□□ -0.35
LIME1-205ENST00000480139 FUSP35637 526 aaKnown RBP eCLIP12.89□□□□□ -0.35
LIME1-205ENST00000480139 FAM19A3Q7Z5A8 133 aa12.89□□□□□ -0.35
LIME1-205ENST00000480139 BAGE3Q86Y29 109 aa12.89□□□□□ -0.35
LIME1-205ENST00000480139 GVQW2A0A096LPI5 108 aaPredicted RBP12.88□□□□□ -0.35
LIME1-205ENST00000480139 IGHV3OR16-9A0A0B4J2B5 98 aa12.88□□□□□ -0.35
LIME1-205ENST00000480139 IGHV1-58A0A0C4DH39 117 aa12.88□□□□□ -0.35
LIME1-205ENST00000480139 hDV102S1A0JD36 115 aa12.88□□□□□ -0.35
LIME1-205ENST00000480139 PDZD11Q5EBL8 140 aa12.88□□□□□ -0.35
LIME1-205ENST00000480139 LINC00242Q5T6M2 205 aa12.88□□□□□ -0.35
LIME1-205ENST00000480139 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.87□□□□□ -0.35
LIME1-205ENST00000480139 GCSHP23434 173 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms