RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 LYNX1P0DP58 116 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 MGST1P10620 155 aaKnown RBP0.88□□□□□ -2.27
VPS50-213ENST00000477572 DSCR4P56555 118 aaPredicted RBP0.88□□□□□ -2.27
VPS50-213ENST00000477572 KRTDAPP60985 99 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 SLC48A1Q6P1K1 146 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 SFTA2Q6UW10 78 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 CYP2G1PQ6ZSU1 146 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 COA5Q86WW8 74 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 DYNAPQ8N1N2 210 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 TMEM141Q96I45 108 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 Q96M85 177 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 LINC01600Q96MT4 127 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 SMIM7Q9BQ49 75 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 LINC00467Q9BRT7 94 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 BPESC1Q9GZL8 116 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 V9GYH0 126 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 BIVM-ERCC5R4GMW8 1640 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 HMGXB3Q12766 1538 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 NEXMIFQ5QGS0 1516 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 KCPQ6ZWJ8 1503 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 LOC285556D6RIA3 1793 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 COL14A1Q05707 1796 aaKnown RBP0.88□□□□□ -2.27
VPS50-213ENST00000477572 ANKRD36CQ5JPF3 1778 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 PI4KAP42356 2102 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 WIZO95785 1651 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 SCN7AQ01118 1682 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 ALS2Q96Q42 1657 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 UGGT1Q9NYU2 1555 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 MED12Q93074 2177 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 RALGAPBQ86X10 1494 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 PARP4Q9UKK3 1724 aaKnown RBP0.87□□□□□ -2.27
VPS50-213ENST00000477572 ROS1P08922 2347 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 PAPPAQ13219 1627 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 ABCA5Q8WWZ7 1642 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 ALKQ9UM73 1620 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 TRBV10-3A0A0K0K1G6 114 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 TRBV10-2A0A0K0K1G8 114 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 TEX49A0A1B0GTD5 131 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 TCRBV4S1A1TA0A5B7 111 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 C17orf112F2Z3M2 114 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 ANGP03950 147 aaKnown RBP0.87□□□□□ -2.27
VPS50-213ENST00000477572 C3orf79P0CE67 100 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 CXCL8P10145 99 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 CD24P25063 80 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 SNRPFP62306 86 aaKnown RBP0.87□□□□□ -2.27
VPS50-213ENST00000477572 ZNF56Q15929 161 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 DEFB113Q30KQ7 82 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 ZNF791Q3KP31 576 aaPredicted RBP0.87□□□□□ -2.27
VPS50-213ENST00000477572 C9orf116Q5BN46 136 aaPredicted RBP0.87□□□□□ -2.27
VPS50-213ENST00000477572 TMEM170BQ5T4T1 132 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 Q5VV11 94 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 CASC2Q6XLA1 102 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 Q6ZTI0 123 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 VMO1Q7Z5L0 202 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 Q8TAT8 98 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 PROK2Q9HC23 129 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 MANBALQ9NQG1 85 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 CDC42SE1Q9NRR8 79 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 NHP2Q9NX24 153 aaKnown RBP0.87□□□□□ -2.27
VPS50-213ENST00000477572 HILPDAQ9Y5L2 63 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 FAM215AQ9Y5M1 114 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 ABCC6O95255 1503 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 CEP192Q8TEP8 1941 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 TNRC6BQ9UPQ9 1833 aaKnown RBP0.87□□□□□ -2.27
VPS50-213ENST00000477572 CDC42BPGQ6DT37 1551 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 DNAJC13O75165 2243 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 UNC13CQ8NB66 2214 aa0.87□□□□□ -2.27
VPS50-213ENST00000477572 PKD1L3Q7Z443 1732 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 TIAM2Q8IVF5 1701 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 ABCA4P78363 2273 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 NCOA6Q14686 2063 aaPredicted RBP0.86□□□□□ -2.27
VPS50-213ENST00000477572 ZNF831Q5JPB2 1677 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 FXYD6-FXYD2A0A087WZ82 144 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 TMSB15BA0A087X1C1 80 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 TRBV7-1A0A0A6YYK4 115 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 TRAV22A0A0B4J277 110 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 IGHV1-18A0A0C4DH31 117 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 FAM223BA6NKX1 122 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 IQCF6A8MYZ5 107 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 C10orf142B7Z368 130 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 E7EUB6 86 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 F8WEM9 126 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 NDUFC1O43677 76 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 COX8AP10176 69 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 FXYD2P54710 66 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 UBE2D3P61077 147 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 UBE2D2P62837 147 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 MIR22HGQ0VDD5 57 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 KLKP1Q107X0 134 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 ZNF826PQ6ZT77 177 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 LINC00643Q86TS7 51 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 Q8N6K4 173 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 FXYD6Q9H0Q3 95 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 TIMM9Q9Y5J7 89 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 ARHGEF5Q12774 1597 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 IQGAP2Q13576 1575 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 CEP170BQ9Y4F5 1589 aaPredicted RBP0.86□□□□□ -2.27
VPS50-213ENST00000477572 POLR1AO95602 1720 aaPredicted RBP0.86□□□□□ -2.27
VPS50-213ENST00000477572 TJP1Q07157 1748 aa0.86□□□□□ -2.27
VPS50-213ENST00000477572 NKTRP30414 1462 aaKnown RBP0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms