RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 UQCR11O14957 56 aa-0.19□□□□□ -2.44
CCDC88A-212ENST00000474059 APOC2P02655 101 aa-0.19□□□□□ -2.44
CCDC88A-212ENST00000474059 S100A3P33764 101 aa-0.19□□□□□ -2.44
CCDC88A-212ENST00000474059 BAGE2Q86Y30 109 aa-0.19□□□□□ -2.44
CCDC88A-212ENST00000474059 C8orf59Q8N0T1 100 aaPredicted RBP-0.19□□□□□ -2.44
CCDC88A-212ENST00000474059 TP53AIP1Q9HCN2 124 aa-0.19□□□□□ -2.44
CCDC88A-212ENST00000474059 UBR5O95071 2799 aaPredicted RBP-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 MYOM1P52179 1685 aa-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 A2ML1A8K2U0 1454 aa-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 NALCNQ8IZF0 1738 aa-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 IGLC7A0M8Q6 106 aa-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 I3L2K1 104 aa-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 SPRR1AP35321 89 aa-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 Q6JHZ5 121 aa-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 COMMD6Q7Z4G1 85 aa-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 C5orf38Q86SI9 138 aa-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 PAPPAQ13219 1627 aa-0.2□□□□□ -2.44
CCDC88A-212ENST00000474059 C10orf71Q711Q0 1435 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 OOSP1A8MZH6 123 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 HMGN4O00479 90 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 SSSCA1O60232 199 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 APOC3P02656 99 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 PI4KAP42356 2102 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 TPPP2P59282 170 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 PP6455Q8WZ26 134 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 LINC01558Q9Y6Z2 57 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 ARHGEF5Q12774 1597 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 CSMD3Q7Z407 3707 aa-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 ROCK2O75116 1388 aaKnown RBP-0.21□□□□□ -2.44
CCDC88A-212ENST00000474059 MYCBP2O75592 4640 aa-0.22□□□□□ -2.44
CCDC88A-212ENST00000474059 ANKRD17O75179 2603 aaKnown RBP-0.22□□□□□ -2.44
CCDC88A-212ENST00000474059 IFNGP01579 166 aa-0.22□□□□□ -2.44
CCDC88A-212ENST00000474059 AKAIN1P0CW23 69 aa-0.22□□□□□ -2.44
CCDC88A-212ENST00000474059 LINC00474Q9P2X8 69 aa-0.22□□□□□ -2.44
CCDC88A-212ENST00000474059 CACNA1AO00555 2505 aa-0.22□□□□□ -2.44
CCDC88A-212ENST00000474059 KTN1Q86UP2 1357 aaKnown RBP-0.22□□□□□ -2.45
CCDC88A-212ENST00000474059 RAPGEF6Q8TEU7 1601 aa-0.23□□□□□ -2.45
CCDC88A-212ENST00000474059 ZNF292O60281 2723 aa-0.23□□□□□ -2.45
CCDC88A-212ENST00000474059 FXYD6-FXYD2A0A087WZ82 144 aa-0.23□□□□□ -2.45
CCDC88A-212ENST00000474059 DCDP81605 110 aaKnown RBP-0.23□□□□□ -2.45
CCDC88A-212ENST00000474059 MRPL54Q6P161 138 aaKnown RBP-0.23□□□□□ -2.45
CCDC88A-212ENST00000474059 BTAF1O14981 1849 aa-0.23□□□□□ -2.45
CCDC88A-212ENST00000474059 TCHHQ07283 1943 aa-0.23□□□□□ -2.45
CCDC88A-212ENST00000474059 TET3O43151 1660 aa-0.24□□□□□ -2.45
CCDC88A-212ENST00000474059 KDM5AP29375 1690 aaKnown RBP-0.24□□□□□ -2.45
CCDC88A-212ENST00000474059 TRBV6-1A0A0K0K1D8 114 aa-0.24□□□□□ -2.45
CCDC88A-212ENST00000474059 LOC285095A0A1B0GVY8 99 aa-0.24□□□□□ -2.45
CCDC88A-212ENST00000474059 SFT2D2O95562 160 aa-0.24□□□□□ -2.45
CCDC88A-212ENST00000474059 KRTAP6-1Q3LI64 71 aa-0.24□□□□□ -2.45
CCDC88A-212ENST00000474059 C9orf153Q5TBE3 101 aa-0.24□□□□□ -2.45
CCDC88A-212ENST00000474059 RPL13AP3Q6NVV1 102 aa-0.24□□□□□ -2.45
CCDC88A-212ENST00000474059 MYOZ3Q8TDC0 251 aa-0.24□□□□□ -2.45
CCDC88A-212ENST00000474059 TENM4Q6N022 2769 aa-0.24□□□□□ -2.45
CCDC88A-212ENST00000474059 ABCA2Q9BZC7 2435 aa-0.25□□□□□ -2.45
CCDC88A-212ENST00000474059 TNFP01375 233 aa-0.25□□□□□ -2.45
CCDC88A-212ENST00000474059 PRM1P04553 51 aa-0.25□□□□□ -2.45
CCDC88A-212ENST00000474059 SPRR2DP22532 72 aa-0.25□□□□□ -2.45
CCDC88A-212ENST00000474059 PIGYQ3MUY2 71 aa-0.25□□□□□ -2.45
CCDC88A-212ENST00000474059 SMG6Q86US8 1419 aaKnown RBP-0.25□□□□□ -2.45
CCDC88A-212ENST00000474059 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.25□□□□□ -2.45
CCDC88A-212ENST00000474059 MYOM2P54296 1465 aa-0.25□□□□□ -2.45
CCDC88A-212ENST00000474059 ARHGEF12Q9NZN5 1544 aa-0.25□□□□□ -2.45
CCDC88A-212ENST00000474059 SPTBN2O15020 2390 aa-0.26□□□□□ -2.45
CCDC88A-212ENST00000474059 TSC2P49815 1807 aa-0.26□□□□□ -2.45
CCDC88A-212ENST00000474059 SHANK2Q9UPX8 1470 aa-0.26□□□□□ -2.45
CCDC88A-212ENST00000474059 UBE2L5PA0A1B0GUS4 154 aa-0.26□□□□□ -2.45
CCDC88A-212ENST00000474059 CHKB-CPT1BH3BT56 60 aa-0.26□□□□□ -2.45
CCDC88A-212ENST00000474059 UBE2L3P68036 154 aaKnown RBP-0.26□□□□□ -2.45
CCDC88A-212ENST00000474059 HSPG2P98160 4391 aa-0.27□□□□□ -2.45
CCDC88A-212ENST00000474059 NSD3Q9BZ95 1437 aa-0.27□□□□□ -2.45
CCDC88A-212ENST00000474059 A0A1B0GV90 55 aa-0.27□□□□□ -2.45
CCDC88A-212ENST00000474059 SNAPC5O75971 98 aa-0.27□□□□□ -2.45
CCDC88A-212ENST00000474059 LPAP08519 4548 aa-0.27□□□□□ -2.45
CCDC88A-212ENST00000474059 FLNCQ14315 2725 aa-0.27□□□□□ -2.45
CCDC88A-212ENST00000474059 NCOR1O75376 2440 aa-0.27□□□□□ -2.45
CCDC88A-212ENST00000474059 C2CD3Q4AC94 2353 aa-0.27□□□□□ -2.45
CCDC88A-212ENST00000474059 DOPEY2Q9Y3R5 2298 aa-0.27□□□□□ -2.45
CCDC88A-212ENST00000474059 KMT2AQ03164 3969 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 PTPRQQ9UMZ3 2332 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 EFCAB10A6NFE3 127 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 DLEU1O43261 78 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 MGPP08493 103 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 DPH3P1Q9H4G8 78 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 CDC42SE2Q9NRR3 84 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 UQCR10Q9UDW1 63 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 SCN7AQ01118 1682 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 HMGXB3Q12766 1538 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 VWFP04275 2813 aa-0.28□□□□□ -2.45
CCDC88A-212ENST00000474059 WDR7Q9Y4E6 1490 aa-0.29□□□□□ -2.46
CCDC88A-212ENST00000474059 IGLC1P0CG04 106 aa-0.29□□□□□ -2.46
CCDC88A-212ENST00000474059 ATP5EP56381 51 aaPredicted RBP-0.29□□□□□ -2.46
CCDC88A-212ENST00000474059 TMEM263Q8WUH6 116 aaKnown RBP-0.29□□□□□ -2.46
CCDC88A-212ENST00000474059 SPRR4Q96PI1 79 aa-0.29□□□□□ -2.46
CCDC88A-212ENST00000474059 NXT2Q9NPJ8 142 aaKnown RBP-0.29□□□□□ -2.46
CCDC88A-212ENST00000474059 EHBP1L1Q8N3D4 1523 aa-0.29□□□□□ -2.46
CCDC88A-212ENST00000474059 MYO7BQ6PIF6 2116 aa-0.29□□□□□ -2.46
CCDC88A-212ENST00000474059 SCAPERQ9BY12 1400 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 PLCE1Q9P212 2302 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 USF3Q68DE3 2245 aa-0.3□□□□□ -2.46
CCDC88A-212ENST00000474059 EIF4G3O43432 1585 aaKnown RBP-0.3□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms