RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 IGIPA6NJ69 53 aa6.63□□□□□ -1.35
COL6A3-210ENST00000473258 PRR15Q8IV56 129 aa6.63□□□□□ -1.35
COL6A3-210ENST00000473258 RBM12B-AS1Q9P1G2 102 aa6.63□□□□□ -1.35
COL6A3-210ENST00000473258 TSPEAR-AS2P59090 65 aa6.63□□□□□ -1.35
COL6A3-210ENST00000473258 LINC01356Q8N9X3 169 aa6.63□□□□□ -1.35
COL6A3-210ENST00000473258 AGRNO00468 2067 aa6.62□□□□□ -1.35
COL6A3-210ENST00000473258 TRPM7Q96QT4 1865 aa6.62□□□□□ -1.35
COL6A3-210ENST00000473258 RUSC1-AS1Q66K80 236 aa6.62□□□□□ -1.35
COL6A3-210ENST00000473258 CNOT1A5YKK6 2376 aaKnown RBP6.62□□□□□ -1.35
COL6A3-210ENST00000473258 M0R378 163 aa6.62□□□□□ -1.35
COL6A3-210ENST00000473258 TSHBP01222 138 aa6.62□□□□□ -1.35
COL6A3-210ENST00000473258 FSHBP01225 129 aa6.62□□□□□ -1.35
COL6A3-210ENST00000473258 DEFB1P60022 68 aa6.62□□□□□ -1.35
COL6A3-210ENST00000473258 ADAMTSL4-AS1Q5T5F5 129 aa6.62□□□□□ -1.35
COL6A3-210ENST00000473258 CHCHD10Q8WYQ3 142 aaPredicted RBP6.62□□□□□ -1.35
COL6A3-210ENST00000473258 GREB1LQ9C091 1923 aaPredicted RBP6.62□□□□□ -1.35
COL6A3-210ENST00000473258 COL24A1Q17RW2 1714 aa6.62□□□□□ -1.35
COL6A3-210ENST00000473258 C1orf137Q5JT78 98 aa6.62□□□□□ -1.35
COL6A3-210ENST00000473258 DLEC1Q9Y238 1755 aa6.61□□□□□ -1.35
COL6A3-210ENST00000473258 E7EUB6 86 aa6.61□□□□□ -1.35
COL6A3-210ENST00000473258 A0A096LNJ9 63 aa6.61□□□□□ -1.35
COL6A3-210ENST00000473258 GAS8-AS1O95177 125 aa6.61□□□□□ -1.35
COL6A3-210ENST00000473258 IGLV2-11P01706 119 aa6.61□□□□□ -1.35
COL6A3-210ENST00000473258 MUC7Q8TAX7 377 aa6.61□□□□□ -1.35
COL6A3-210ENST00000473258 TAF1LQ8IZX4 1826 aa6.61□□□□□ -1.35
COL6A3-210ENST00000473258 IGLV4-69A0A075B6H9 119 aa6.61□□□□□ -1.35
COL6A3-210ENST00000473258 REG3AQ06141 175 aa6.6□□□□□ -1.35
COL6A3-210ENST00000473258 IGLV2-23P01705 113 aa6.6□□□□□ -1.35
COL6A3-210ENST00000473258 CNFNQ9BYD5 112 aa6.6□□□□□ -1.35
COL6A3-210ENST00000473258 RGPD2P0DJD1 1756 aa6.6□□□□□ -1.35
COL6A3-210ENST00000473258 NRAPQ86VF7 1730 aa6.6□□□□□ -1.35
COL6A3-210ENST00000473258 ZNF503-AS2A6NEH8 195 aa6.6□□□□□ -1.35
COL6A3-210ENST00000473258 COX17Q14061 63 aa6.6□□□□□ -1.35
COL6A3-210ENST00000473258 SMIM29Q86T20 159 aa6.6□□□□□ -1.35
COL6A3-210ENST00000473258 RLFQ13129 1914 aa6.6□□□□□ -1.35
COL6A3-210ENST00000473258 DOCK5Q9H7D0 1870 aa6.6□□□□□ -1.35
COL6A3-210ENST00000473258 K7EMT4 169 aa6.59□□□□□ -1.35
COL6A3-210ENST00000473258 GRNP28799 593 aaKnown RBP6.59□□□□□ -1.35
COL6A3-210ENST00000473258 SBF2Q86WG5 1849 aa6.59□□□□□ -1.35
COL6A3-210ENST00000473258 RGPD3A6NKT7 1758 aaPredicted RBP6.59□□□□□ -1.35
COL6A3-210ENST00000473258 RGPD4Q7Z3J3 1758 aa6.59□□□□□ -1.35
COL6A3-210ENST00000473258 RITA1Q96K30 269 aa6.59□□□□□ -1.35
COL6A3-210ENST00000473258 LOC101927531A0A1B0GV80 90 aa6.59□□□□□ -1.36
COL6A3-210ENST00000473258 LY6HO94772 140 aa6.59□□□□□ -1.36
COL6A3-210ENST00000473258 PRO0255Q9UI72 69 aa6.58□□□□□ -1.36
COL6A3-210ENST00000473258 PLXND1Q9Y4D7 1925 aa6.58□□□□□ -1.36
COL6A3-210ENST00000473258 C5orf56Q8N8D9 126 aa6.58□□□□□ -1.36
COL6A3-210ENST00000473258 TM2D3Q9BRN9 247 aa6.58□□□□□ -1.36
COL6A3-210ENST00000473258 SPINK6Q6UWN8 80 aa6.58□□□□□ -1.36
COL6A3-210ENST00000473258 SSBP3-AS1Q7Z2R9 100 aa6.58□□□□□ -1.36
COL6A3-210ENST00000473258 CTSZQ9UBR2 303 aa6.58□□□□□ -1.36
COL6A3-210ENST00000473258 PRRC2AP48634 2157 aaKnown RBP6.58□□□□□ -1.36
COL6A3-210ENST00000473258 H3BPC8 53 aa6.57□□□□□ -1.36
COL6A3-210ENST00000473258 KLKP1Q107X0 134 aa6.57□□□□□ -1.36
COL6A3-210ENST00000473258 E7EQL1 145 aa6.57□□□□□ -1.36
COL6A3-210ENST00000473258 BPESC1Q9GZL8 116 aa6.57□□□□□ -1.36
COL6A3-210ENST00000473258 FAM215AQ9Y5M1 114 aa6.57□□□□□ -1.36
COL6A3-210ENST00000473258 TECTAO75443 2155 aa6.57□□□□□ -1.36
COL6A3-210ENST00000473258 TRAV22A0A0B4J277 110 aa6.57□□□□□ -1.36
COL6A3-210ENST00000473258 ERC2-IT1O76042 136 aa6.57□□□□□ -1.36
COL6A3-210ENST00000473258 SPINK1P00995 79 aa6.57□□□□□ -1.36
COL6A3-210ENST00000473258 SPART-AS1P0CW21 52 aa6.57□□□□□ -1.36
COL6A3-210ENST00000473258 TRAV10A0A0B4J240 114 aa6.56□□□□□ -1.36
COL6A3-210ENST00000473258 OBSL1O75147 1896 aa6.56□□□□□ -1.36
COL6A3-210ENST00000473258 IGKV2-28A0A075B6P5 120 aa6.56□□□□□ -1.36
COL6A3-210ENST00000473258 IGKV2D-28P01615 120 aa6.56□□□□□ -1.36
COL6A3-210ENST00000473258 LINC00482Q8N8I6 264 aa6.56□□□□□ -1.36
COL6A3-210ENST00000473258 BRWD1-AS2P59051 145 aa6.56□□□□□ -1.36
COL6A3-210ENST00000473258 THADAQ6YHU6 1953 aa6.55□□□□□ -1.36
COL6A3-210ENST00000473258 IGLV1-44P01699 117 aa6.55□□□□□ -1.36
COL6A3-210ENST00000473258 ACYP2P14621 99 aa6.55□□□□□ -1.36
COL6A3-210ENST00000473258 BRI3O95415 125 aa6.55□□□□□ -1.36
COL6A3-210ENST00000473258 FAM208BQ5VWN6 2430 aa6.55□□□□□ -1.36
COL6A3-210ENST00000473258 BRCA1P38398 1863 aaKnown RBP6.55□□□□□ -1.36
COL6A3-210ENST00000473258 EPOPA6NHQ4 379 aa6.55□□□□□ -1.36
COL6A3-210ENST00000473258 TSC2P49815 1807 aa6.54□□□□□ -1.36
COL6A3-210ENST00000473258 LINC01548A6NM66 108 aa6.54□□□□□ -1.36
COL6A3-210ENST00000473258 DEFB136Q30KP8 78 aa6.54□□□□□ -1.36
COL6A3-210ENST00000473258 PRSS33Q8NF86 280 aa6.54□□□□□ -1.36
COL6A3-210ENST00000473258 ZNF831Q5JPB2 1677 aa6.54□□□□□ -1.36
COL6A3-210ENST00000473258 SMIM1B2RUZ4 78 aa6.54□□□□□ -1.36
COL6A3-210ENST00000473258 Q8IZM0 81 aa6.54□□□□□ -1.36
COL6A3-210ENST00000473258 NCOA6Q14686 2063 aaPredicted RBP6.54□□□□□ -1.36
COL6A3-210ENST00000473258 IGKV2-24A0A0C4DH68 120 aa6.54□□□□□ -1.36
COL6A3-210ENST00000473258 LINC00242Q5T6M2 205 aa6.53□□□□□ -1.36
COL6A3-210ENST00000473258 FHL3Q13643 280 aa6.53□□□□□ -1.36
COL6A3-210ENST00000473258 KRTAP27-1Q3LI81 207 aa6.53□□□□□ -1.36
COL6A3-210ENST00000473258 H7BZZ5 65 aa6.53□□□□□ -1.36
COL6A3-210ENST00000473258 DEFB116Q30KQ4 102 aa6.53□□□□□ -1.36
COL6A3-210ENST00000473258 Q6ZTI0 123 aa6.53□□□□□ -1.36
COL6A3-210ENST00000473258 EXPH5Q8NEV8 1989 aa6.53□□□□□ -1.36
COL6A3-210ENST00000473258 LY6LH3BQJ8 138 aa6.53□□□□□ -1.36
COL6A3-210ENST00000473258 LINC01554Q52M75 96 aa6.53□□□□□ -1.36
COL6A3-210ENST00000473258 GPHB5Q86YW7 130 aa6.53□□□□□ -1.36
COL6A3-210ENST00000473258 MSMBP08118 114 aa6.52□□□□□ -1.37
COL6A3-210ENST00000473258 Q6ZTC4 211 aa6.52□□□□□ -1.37
COL6A3-210ENST00000473258 PIP4P1Q86T03 277 aa6.52□□□□□ -1.37
COL6A3-210ENST00000473258 ADAMTS7Q9UKP4 1686 aa6.52□□□□□ -1.37
COL6A3-210ENST00000473258 UQCR11O14957 56 aa6.52□□□□□ -1.37
COL6A3-210ENST00000473258 C11orf21Q9P2W6 132 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms