RNA–Protein interactions for RNA: ENST00000472959.5

TOP3A-204, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 3

Gene TOP3A, Length 913 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-204ENST00000472959 TRAPPC1Q9Y5R8 145 aa13.8□□□□□ -0.2
TOP3A-204ENST00000472959 MAPKAPK5-AS1Q8N8E1 139 aa13.79□□□□□ -0.2
TOP3A-204ENST00000472959 UBE2D4Q9Y2X8 147 aa13.79□□□□□ -0.2
TOP3A-204ENST00000472959 HECTD4Q9Y4D8 3996 aa13.78□□□□□ -0.2
TOP3A-204ENST00000472959 SPATA12Q7Z6I5 190 aa13.78□□□□□ -0.2
TOP3A-204ENST00000472959 CBLN2Q8IUK8 224 aa13.78□□□□□ -0.2
TOP3A-204ENST00000472959 ZNF664Q8N3J9 261 aa13.78□□□□□ -0.2
TOP3A-204ENST00000472959 CDC42SE2Q9NRR3 84 aa13.78□□□□□ -0.2
TOP3A-204ENST00000472959 PGPEP1Q9NXJ5 209 aa13.77□□□□□ -0.21
TOP3A-204ENST00000472959 IFI27P40305 119 aaPredicted RBP13.76□□□□□ -0.21
TOP3A-204ENST00000472959 ORMDL2Q53FV1 153 aa13.76□□□□□ -0.21
TOP3A-204ENST00000472959 BAALCQ8WXS3 180 aa13.76□□□□□ -0.21
TOP3A-204ENST00000472959 SPANXA1Q9NS26 97 aa13.76□□□□□ -0.21
TOP3A-204ENST00000472959 IGLV10-54A0A075B6I4 117 aa13.75□□□□□ -0.21
TOP3A-204ENST00000472959 RPL39P62891 51 aaKnown RBP13.75□□□□□ -0.21
TOP3A-204ENST00000472959 KRTAP26-1Q6PEX3 210 aa13.75□□□□□ -0.21
TOP3A-204ENST00000472959 PRSS3P2Q8NHM4 247 aa13.75□□□□□ -0.21
TOP3A-204ENST00000472959 PKD1P98161 4303 aa13.74□□□□□ -0.21
TOP3A-204ENST00000472959 IGKV3OR2-268A0A0C4DH90 116 aa13.74□□□□□ -0.21
TOP3A-204ENST00000472959 G0S2P27469 103 aa13.74□□□□□ -0.21
TOP3A-204ENST00000472959 KRTAP10-2P60368 255 aa13.74□□□□□ -0.21
TOP3A-204ENST00000472959 Q8N814 137 aa13.74□□□□□ -0.21
TOP3A-204ENST00000472959 CDPF1Q6NVV7 123 aa13.73□□□□□ -0.21
TOP3A-204ENST00000472959 WFDC2Q14508 124 aa13.72□□□□□ -0.21
TOP3A-204ENST00000472959 NTN5Q8WTR8 489 aaPredicted RBP13.72□□□□□ -0.21
TOP3A-204ENST00000472959 CYSLTR1Q9Y271 337 aa13.72□□□□□ -0.21
TOP3A-204ENST00000472959 PYGO1Q9Y3Y4 419 aa13.72□□□□□ -0.21
TOP3A-204ENST00000472959 LINC00959A0A1B0GUT2 108 aa13.71□□□□□ -0.21
TOP3A-204ENST00000472959 C16orf90A8MZG2 172 aa13.71□□□□□ -0.21
TOP3A-204ENST00000472959 LECT2O14960 151 aa13.71□□□□□ -0.21
TOP3A-204ENST00000472959 MRPS36P82909 103 aaKnown RBP13.71□□□□□ -0.21
TOP3A-204ENST00000472959 CHCHD10Q8WYQ3 142 aaPredicted RBP13.71□□□□□ -0.21
TOP3A-204ENST00000472959 LINC01546A6NGU7 62 aa13.7□□□□□ -0.22
TOP3A-204ENST00000472959 CCL25O15444 150 aa13.7□□□□□ -0.22
TOP3A-204ENST00000472959 SS18Q15532 418 aa13.7□□□□□ -0.22
TOP3A-204ENST00000472959 C14orf177Q52M58 125 aa13.7□□□□□ -0.22
TOP3A-204ENST00000472959 DNAH11Q96DT5 4516 aa13.7□□□□□ -0.22
TOP3A-204ENST00000472959 C2orf66Q6UXQ4 117 aa13.69□□□□□ -0.22
TOP3A-204ENST00000472959 Q6ZUT4 128 aa13.69□□□□□ -0.22
TOP3A-204ENST00000472959 GAGE12HA6NDE8 117 aa13.68□□□□□ -0.22
TOP3A-204ENST00000472959 FA2HQ7L5A8 372 aa13.68□□□□□ -0.22
TOP3A-204ENST00000472959 C1orf196B1AJZ1 125 aa13.67□□□□□ -0.22
TOP3A-204ENST00000472959 USP17L23D6RBM5 183 aa13.67□□□□□ -0.22
TOP3A-204ENST00000472959 C18orf32Q8TCD1 76 aa13.67□□□□□ -0.22
TOP3A-204ENST00000472959 FAM104AQ969W3 186 aa13.67□□□□□ -0.22
TOP3A-204ENST00000472959 PKHD1P08F94 4074 aa13.67□□□□□ -0.22
TOP3A-204ENST00000472959 LINC01549A6NIU2 74 aa13.66□□□□□ -0.22
TOP3A-204ENST00000472959 NPSP0C0P6 89 aa13.66□□□□□ -0.22
TOP3A-204ENST00000472959 RNASE13Q5GAN3 156 aaKnown RBP13.66□□□□□ -0.22
TOP3A-204ENST00000472959 OPRPNQ99935 248 aaPredicted RBP13.66□□□□□ -0.22
TOP3A-204ENST00000472959 IGLV5-52A0A0A0MRZ9 124 aa13.65□□□□□ -0.22
TOP3A-204ENST00000472959 XCL1P47992 114 aa13.65□□□□□ -0.22
TOP3A-204ENST00000472959 TOMM6Q96B49 74 aa13.65□□□□□ -0.22
TOP3A-204ENST00000472959 KRTAP17-1Q9BYP8 105 aa13.65□□□□□ -0.22
TOP3A-204ENST00000472959 IGLV4-3A0A075B6K6 122 aa13.64□□□□□ -0.23
TOP3A-204ENST00000472959 TRAV13-1A0A0B4J241 112 aa13.64□□□□□ -0.23
TOP3A-204ENST00000472959 COLCA2A8K830 154 aa13.64□□□□□ -0.23
TOP3A-204ENST00000472959 FUSP35637 526 aaKnown RBP eCLIP13.64□□□□□ -0.23
TOP3A-204ENST00000472959 FOXI1Q12951 378 aa13.64□□□□□ -0.23
TOP3A-204ENST00000472959 CD164L2Q6UWJ8 174 aa13.64□□□□□ -0.23
TOP3A-204ENST00000472959 TMEM141Q96I45 108 aa13.64□□□□□ -0.23
TOP3A-204ENST00000472959 IGIPA6NJ69 53 aa13.63□□□□□ -0.23
TOP3A-204ENST00000472959 RAB5BP61020 215 aa13.63□□□□□ -0.23
TOP3A-204ENST00000472959 CFAP161Q6P656 301 aa13.63□□□□□ -0.23
TOP3A-204ENST00000472959 AP5S1Q9NUS5 200 aa13.63□□□□□ -0.23
TOP3A-204ENST00000472959 LINC00614P0C842 121 aa13.62□□□□□ -0.23
TOP3A-204ENST00000472959 Q6ZN92 141 aa13.62□□□□□ -0.23
TOP3A-204ENST00000472959 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.61□□□□□ -0.23
TOP3A-204ENST00000472959 IFITM10A6NMD0 228 aa13.61□□□□□ -0.23
TOP3A-204ENST00000472959 GCSHP23434 173 aa13.61□□□□□ -0.23
TOP3A-204ENST00000472959 PAPPA-AS1Q5QFB9 102 aa13.61□□□□□ -0.23
TOP3A-204ENST00000472959 TIMM17AQ99595 171 aa13.61□□□□□ -0.23
TOP3A-204ENST00000472959 DYNC1H1Q14204 4646 aaKnown RBP13.61□□□□□ -0.23
TOP3A-204ENST00000472959 TRGC2P03986 189 aa13.6□□□□□ -0.23
TOP3A-204ENST00000472959 PRSS1P07477 247 aa13.6□□□□□ -0.23
TOP3A-204ENST00000472959 TEX43Q6ZNM6 134 aa13.6□□□□□ -0.23
TOP3A-204ENST00000472959 ERASQ7Z444 233 aa13.6□□□□□ -0.23
TOP3A-204ENST00000472959 VCX2Q9H322 139 aa13.6□□□□□ -0.23
TOP3A-204ENST00000472959 SCO1O75880 301 aa13.59□□□□□ -0.23
TOP3A-204ENST00000472959 SCGB3A1Q96QR1 104 aa13.59□□□□□ -0.23
TOP3A-204ENST00000472959 C2orf88Q9BSF0 95 aa13.59□□□□□ -0.23
TOP3A-204ENST00000472959 URB1-AS1Q96HZ7 61 aa13.58□□□□□ -0.24
TOP3A-204ENST00000472959 AMELXQ99217 191 aa13.58□□□□□ -0.24
TOP3A-204ENST00000472959 hDV102S1A0JD36 115 aa13.57□□□□□ -0.24
TOP3A-204ENST00000472959 COX7A2LO14548 114 aa13.57□□□□□ -0.24
TOP3A-204ENST00000472959 C15orf56Q8N910 161 aa13.57□□□□□ -0.24
TOP3A-204ENST00000472959 S100A1P23297 94 aa13.56□□□□□ -0.24
TOP3A-204ENST00000472959 IGHV1-58A0A0C4DH39 117 aa13.55□□□□□ -0.24
TOP3A-204ENST00000472959 LINC00173Q6ZV60 143 aa13.55□□□□□ -0.24
TOP3A-204ENST00000472959 CHCHD1Q96BP2 118 aaKnown RBP13.55□□□□□ -0.24
TOP3A-204ENST00000472959 GVQW2A0A096LPI5 108 aaPredicted RBP13.54□□□□□ -0.24
TOP3A-204ENST00000472959 MALP21145 153 aa13.54□□□□□ -0.24
TOP3A-204ENST00000472959 UBE2D1P51668 147 aa13.54□□□□□ -0.24
TOP3A-204ENST00000472959 KRTAP10-1P60331 282 aa13.54□□□□□ -0.24
TOP3A-204ENST00000472959 IGHV3OR16-9A0A0B4J2B5 98 aa13.53□□□□□ -0.24
TOP3A-204ENST00000472959 HBDP02042 147 aa13.53□□□□□ -0.24
TOP3A-204ENST00000472959 CNBPP62633 177 aaKnown RBP13.53□□□□□ -0.24
TOP3A-204ENST00000472959 BAGE3Q86Y29 109 aa13.53□□□□□ -0.24
TOP3A-204ENST00000472959 A0A096LNJ9 63 aa13.52□□□□□ -0.25
TOP3A-204ENST00000472959 CDK2AP2O75956 126 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms