RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 IFNA1P01562 189 aa10.95□□□□□ -0.66
SHH-205ENST00000472308 ESDP10768 282 aa10.95□□□□□ -0.66
SHH-205ENST00000472308 RPL13AP40429 203 aaKnown RBP10.95□□□□□ -0.66
SHH-205ENST00000472308 KCNRGQ8N5I3 272 aa10.95□□□□□ -0.66
SHH-205ENST00000472308 FAM213BQ8TBF2 198 aa10.95□□□□□ -0.66
SHH-205ENST00000472308 OPRPNQ99935 248 aaPredicted RBP10.95□□□□□ -0.66
SHH-205ENST00000472308 TRAV1-1A0A0B4J248 108 aa10.94□□□□□ -0.66
SHH-205ENST00000472308 G3V3Q6 166 aa10.94□□□□□ -0.66
SHH-205ENST00000472308 TWIST1Q15672 202 aa10.94□□□□□ -0.66
SHH-205ENST00000472308 EIF5AL1Q6IS14 154 aaKnown RBP10.94□□□□□ -0.66
SHH-205ENST00000472308 FSIP2Q5CZC0 6907 aa10.93□□□□□ -0.66
SHH-205ENST00000472308 XKRY2A2RUG3 117 aa10.93□□□□□ -0.66
SHH-205ENST00000472308 FOXA3P55318 350 aaPredicted RBP10.93□□□□□ -0.66
SHH-205ENST00000472308 C2orf48Q96LS8 159 aa10.93□□□□□ -0.66
SHH-205ENST00000472308 COX7A2LO14548 114 aa10.92□□□□□ -0.66
SHH-205ENST00000472308 TSHBP01222 138 aa10.92□□□□□ -0.66
SHH-205ENST00000472308 MALP21145 153 aa10.92□□□□□ -0.66
SHH-205ENST00000472308 MRPL52Q86TS9 123 aaKnown RBP10.92□□□□□ -0.66
SHH-205ENST00000472308 RAB19A4D1S5 217 aa10.91□□□□□ -0.66
SHH-205ENST00000472308 I3L3M4 83 aa10.91□□□□□ -0.66
SHH-205ENST00000472308 TSPAN13O95857 204 aa10.91□□□□□ -0.66
SHH-205ENST00000472308 TRBV20OR9-2A0A075B6H5 130 aa10.9□□□□□ -0.66
SHH-205ENST00000472308 PMCHP20382 165 aa10.9□□□□□ -0.66
SHH-205ENST00000472308 KRTAP7-1Q8IUC3 87 aa10.9□□□□□ -0.66
SHH-205ENST00000472308 MRAP2Q96G30 205 aa10.9□□□□□ -0.66
SHH-205ENST00000472308 TMEM242Q9NWH2 141 aa10.9□□□□□ -0.66
SHH-205ENST00000472308 TRBV6-5A0A0K0K1A5 114 aa10.89□□□□□ -0.67
SHH-205ENST00000472308 ARPC5O15511 151 aa10.89□□□□□ -0.67
SHH-205ENST00000472308 RNF151Q2KHN1 245 aa10.89□□□□□ -0.67
SHH-205ENST00000472308 TSKUQ8WUA8 353 aa10.89□□□□□ -0.67
SHH-205ENST00000472308 SMIM12Q96EX1 92 aa10.89□□□□□ -0.67
SHH-205ENST00000472308 GNG4P50150 75 aa10.88□□□□□ -0.67
SHH-205ENST00000472308 CCL20P78556 96 aa10.88□□□□□ -0.67
SHH-205ENST00000472308 FAM19A5Q7Z5A7 132 aaPredicted RBP10.88□□□□□ -0.67
SHH-205ENST00000472308 RNASE7Q9H1E1 156 aaKnown RBP10.88□□□□□ -0.67
SHH-205ENST00000472308 CARHSP1Q9Y2V2 147 aaKnown RBP10.88□□□□□ -0.67
SHH-205ENST00000472308 C1orf196B1AJZ1 125 aa10.87□□□□□ -0.67
SHH-205ENST00000472308 UMAD1C9J7I0 102 aa10.87□□□□□ -0.67
SHH-205ENST00000472308 SPAG11BQ08648 103 aa10.87□□□□□ -0.67
SHH-205ENST00000472308 C5orf38Q86SI9 138 aa10.87□□□□□ -0.67
SHH-205ENST00000472308 H2AFB1P0C5Y9 115 aa10.86□□□□□ -0.67
SHH-205ENST00000472308 TEX261Q6UWH6 196 aa10.86□□□□□ -0.67
SHH-205ENST00000472308 NUDT10Q8NFP7 164 aa10.86□□□□□ -0.67
SHH-205ENST00000472308 NUDT11Q96G61 164 aa10.86□□□□□ -0.67
SHH-205ENST00000472308 GNG13Q9P2W3 67 aa10.86□□□□□ -0.67
SHH-205ENST00000472308 RNASE13Q5GAN3 156 aaKnown RBP10.85□□□□□ -0.67
SHH-205ENST00000472308 RPP21Q9H633 154 aaKnown RBP10.85□□□□□ -0.67
SHH-205ENST00000472308 MANBALQ9NQG1 85 aa10.85□□□□□ -0.67
SHH-205ENST00000472308 MRPL35Q9NZE8 188 aaKnown RBP10.85□□□□□ -0.67
SHH-205ENST00000472308 C7orf77A4D0Y5 90 aa10.83□□□□□ -0.68
SHH-205ENST00000472308 C10orf25Q5T742 122 aa10.83□□□□□ -0.68
SHH-205ENST00000472308 TRAV13-1A0A0B4J241 112 aa10.82□□□□□ -0.68
SHH-205ENST00000472308 M0QXV9 152 aa10.82□□□□□ -0.68
SHH-205ENST00000472308 TLX1NBP0CAT3 122 aa10.82□□□□□ -0.68
SHH-205ENST00000472308 LCE2DQ5TA82 110 aaPredicted RBP10.82□□□□□ -0.68
SHH-205ENST00000472308 ST20Q9HBF5 79 aa10.82□□□□□ -0.68
SHH-205ENST00000472308 POLR2KP53803 58 aaKnown RBP10.81□□□□□ -0.68
SHH-205ENST00000472308 UBE2BP63146 152 aa10.81□□□□□ -0.68
SHH-205ENST00000472308 SMIM15Q7Z3B0 74 aa10.81□□□□□ -0.68
SHH-205ENST00000472308 OR10D4PQ8NGN7 298 aa10.81□□□□□ -0.68
SHH-205ENST00000472308 FAM210AQ96ND0 272 aa10.81□□□□□ -0.68
SHH-205ENST00000472308 IMMP2LQ96T52 175 aa10.81□□□□□ -0.68
SHH-205ENST00000472308 CRCT1Q9UGL9 99 aa10.81□□□□□ -0.68
SHH-205ENST00000472308 A0A087X002 238 aa10.8□□□□□ -0.68
SHH-205ENST00000472308 TRBV27A0A0K0K1C4 114 aa10.8□□□□□ -0.68
SHH-205ENST00000472308 BIN3Q9NQY0 253 aa10.8□□□□□ -0.68
SHH-205ENST00000472308 UBE2D4Q9Y2X8 147 aa10.8□□□□□ -0.68
SHH-205ENST00000472308 CSDC2Q9Y534 153 aaKnown RBP10.8□□□□□ -0.68
SHH-205ENST00000472308 GAGE2EQ4V326 116 aa10.79□□□□□ -0.68
SHH-205ENST00000472308 SMDT1Q9H4I9 107 aa10.79□□□□□ -0.68
SHH-205ENST00000472308 C6orf48Q9UBA6 75 aa10.79□□□□□ -0.68
SHH-205ENST00000472308 GAGE2DQ9UEU5 116 aa10.79□□□□□ -0.68
SHH-205ENST00000472308 K7EN84 100 aa10.78□□□□□ -0.68
SHH-205ENST00000472308 UNQ6190/PRO20217Q6UXQ8 127 aa10.78□□□□□ -0.68
SHH-205ENST00000472308 Q6ZUT4 128 aa10.78□□□□□ -0.68
SHH-205ENST00000472308 ORAOV1Q8WV07 137 aa10.78□□□□□ -0.68
SHH-205ENST00000472308 SMLR1H3BR10 107 aa10.77□□□□□ -0.69
SHH-205ENST00000472308 NDUFA1O15239 70 aa10.77□□□□□ -0.69
SHH-205ENST00000472308 ZNF861PO60384 105 aa10.77□□□□□ -0.69
SHH-205ENST00000472308 RETNLBQ9BQ08 111 aa10.77□□□□□ -0.69
SHH-205ENST00000472308 F8WDY8 70 aa10.76□□□□□ -0.69
SHH-205ENST00000472308 PDE6DO43924 150 aa10.76□□□□□ -0.69
SHH-205ENST00000472308 ZNF345Q14585 488 aa10.76□□□□□ -0.69
SHH-205ENST00000472308 MED9Q9NWA0 146 aa10.76□□□□□ -0.69
SHH-205ENST00000472308 IGHV3OR16-9A0A0B4J2B5 98 aa10.73□□□□□ -0.69
SHH-205ENST00000472308 TPRXLQ17RH7 258 aa10.73□□□□□ -0.69
SHH-205ENST00000472308 TMEM241Q24JQ0 296 aa10.73□□□□□ -0.69
SHH-205ENST00000472308 C9orf129Q5T035 196 aaKnown RBP10.73□□□□□ -0.69
SHH-205ENST00000472308 CDIP1Q9H305 208 aa10.73□□□□□ -0.69
SHH-205ENST00000472308 OCC1Q8TAD7 63 aa10.72□□□□□ -0.69
SHH-205ENST00000472308 TYMSOSQ8TAI1 123 aa10.72□□□□□ -0.69
SHH-205ENST00000472308 FAM104AQ969W3 186 aa10.72□□□□□ -0.69
SHH-205ENST00000472308 FCER1GP30273 86 aa10.71□□□□□ -0.69
SHH-205ENST00000472308 VCYO14598 125 aa10.7□□□□□ -0.7
SHH-205ENST00000472308 RAB4AP20338 218 aa10.7□□□□□ -0.7
SHH-205ENST00000472308 TIMM21Q9BVV7 248 aa10.7□□□□□ -0.7
SHH-205ENST00000472308 SMKR1H3BMG3 65 aa10.69□□□□□ -0.7
SHH-205ENST00000472308 CRYGAP11844 174 aa10.69□□□□□ -0.7
SHH-205ENST00000472308 SMAGPQ0VAQ4 97 aa10.69□□□□□ -0.7
SHH-205ENST00000472308 KIAA0087Q14695 138 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms