RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 LYRM1O43325 122 aa3.05□□□□□ -1.92
PTPN4-209ENST00000469511 S100A5P33763 92 aa3.05□□□□□ -1.92
PTPN4-209ENST00000469511 H2BFSP57053 126 aa3.05□□□□□ -1.92
PTPN4-209ENST00000469511 EIF5AP63241 154 aaKnown RBP3.05□□□□□ -1.92
PTPN4-209ENST00000469511 SPANXN1Q5VSR9 72 aa3.05□□□□□ -1.92
PTPN4-209ENST00000469511 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.05□□□□□ -1.92
PTPN4-209ENST00000469511 SSPOA2VEC9 5147 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 IGLV9-49A0A0B4J1Y8 123 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 LINC00959A0A1B0GUT2 108 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 A0A1W2PRE2 83 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 C5orf52A6NGY3 159 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 FAM74A7A6NL05 159 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 CENPXA8MT69 81 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 UBE2L6O14933 153 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 ATP6V0CP27449 155 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 RPL18AQ02543 176 aaKnown RBP3.04□□□□□ -1.92
PTPN4-209ENST00000469511 KRTAP19-2Q3LHN2 52 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 KRTAP13-2Q52LG2 175 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 RNASEKQ6P5S7 137 aaKnown RBP3.04□□□□□ -1.92
PTPN4-209ENST00000469511 OR5A1Q8NGJ0 315 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 PPP1R1CQ8WVI7 109 aa3.04□□□□□ -1.92
PTPN4-209ENST00000469511 IGLV7-46A0A075B6I9 117 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 MPC2O95563 127 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 CXorf1O96002 111 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 LTAP01374 205 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 OR5AL1P0C617 328 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 FGF6P10767 208 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 RPL13AP40429 203 aaKnown RBP3.03□□□□□ -1.92
PTPN4-209ENST00000469511 MT1HP80294 61 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 TPRXLQ17RH7 258 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 RASL11AQ6T310 242 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 FAM19A5Q7Z5A7 132 aaPredicted RBP3.03□□□□□ -1.92
PTPN4-209ENST00000469511 PGLYRP4Q96LB8 373 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 TMEM167BQ9NRX6 74 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 ZFP30Q9Y2G7 519 aa3.03□□□□□ -1.92
PTPN4-209ENST00000469511 SMIM1B2RUZ4 78 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 INMT-MINDY4F8WBC2 141 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 BCL2L11O43521 198 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 APOMO95445 188 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 SMIM17P0DL12 118 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 NTF3P20783 257 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 COTL1Q14019 142 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 CNPY1Q3B7I2 92 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 AMMECR1LQ6DCA0 310 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 RPL39LQ96EH5 51 aaKnown RBP3.02□□□□□ -1.93
PTPN4-209ENST00000469511 CAMK2N2Q96S95 79 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 NIT2Q9NQR4 276 aa3.02□□□□□ -1.93
PTPN4-209ENST00000469511 CARHSP1Q9Y2V2 147 aaKnown RBP3.02□□□□□ -1.93
PTPN4-209ENST00000469511 CCDC160A6NGH7 325 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 CXCL1P09341 107 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 IGLC6P0CF74 106 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 CRYGAP11844 174 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 UBE2G1P62253 170 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 KIAA1644Q3SXP7 199 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 RNASE13Q5GAN3 156 aaKnown RBP3.01□□□□□ -1.93
PTPN4-209ENST00000469511 GATD1Q8NB37 220 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 TYMSOSQ8TAI1 123 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 HIST1H2BAQ96A08 127 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 FMC1Q96HJ9 113 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 AP1S3Q96PC3 154 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 TPPP3Q9BW30 176 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 ACTR3CQ9C0K3 210 aaPredicted RBP3.01□□□□□ -1.93
PTPN4-209ENST00000469511 PPDPFQ9H3Y8 114 aa3.01□□□□□ -1.93
PTPN4-209ENST00000469511 ZNF861PO60384 105 aa3□□□□□ -1.93
PTPN4-209ENST00000469511 NOL3O60936 208 aaKnown RBP3□□□□□ -1.93
PTPN4-209ENST00000469511 AKR1C3P42330 323 aa3□□□□□ -1.93
PTPN4-209ENST00000469511 FOXA3P55318 350 aaPredicted RBP3□□□□□ -1.93
PTPN4-209ENST00000469511 KRTAP10-6P60371 365 aaPredicted RBP3□□□□□ -1.93
PTPN4-209ENST00000469511 SS18Q15532 418 aa3□□□□□ -1.93
PTPN4-209ENST00000469511 ASB16-AS1Q495Z4 193 aa3□□□□□ -1.93
PTPN4-209ENST00000469511 LBHQ53QV2 105 aaPredicted RBP3□□□□□ -1.93
PTPN4-209ENST00000469511 CD164L2Q6UWJ8 174 aa3□□□□□ -1.93
PTPN4-209ENST00000469511 UNQ6190/PRO20217Q6UXQ8 127 aa3□□□□□ -1.93
PTPN4-209ENST00000469511 LINC00173Q6ZV60 143 aa3□□□□□ -1.93
PTPN4-209ENST00000469511 C5orf38Q86SI9 138 aa3□□□□□ -1.93
PTPN4-209ENST00000469511 PSMG3Q9BT73 122 aaPredicted RBP3□□□□□ -1.93
PTPN4-209ENST00000469511 USH2AO75445 5202 aa3□□□□□ -1.93
PTPN4-209ENST00000469511 CTXND1A0A1B0GTU2 59 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 FAM240BA0A1B0GVZ2 78 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 IFITM10A6NMD0 228 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 M0QXV9 152 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 ESDP10768 282 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 UBE2BP63146 152 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 Q5BKY6 102 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 ISOC2Q96AB3 205 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 CDC42SE2Q9NRR3 84 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 C6orf48Q9UBA6 75 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 TNFSF18Q9UNG2 199 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 PKIGQ9Y2B9 76 aa2.99□□□□□ -1.93
PTPN4-209ENST00000469511 C19orf71A6NCJ1 209 aa2.98□□□□□ -1.93
PTPN4-209ENST00000469511 APCSP02743 223 aa2.98□□□□□ -1.93
PTPN4-209ENST00000469511 FHITP49789 147 aa2.98□□□□□ -1.93
PTPN4-209ENST00000469511 SERF2P84101 59 aa2.98□□□□□ -1.93
PTPN4-209ENST00000469511 SPAG11BQ08648 103 aa2.98□□□□□ -1.93
PTPN4-209ENST00000469511 KRTAP13-3Q3SY46 172 aa2.98□□□□□ -1.93
PTPN4-209ENST00000469511 C9orf129Q5T035 196 aaKnown RBP2.98□□□□□ -1.93
PTPN4-209ENST00000469511 LINC00242Q5T6M2 205 aa2.98□□□□□ -1.93
PTPN4-209ENST00000469511 RPL7L1Q6DKI1 246 aaKnown RBP2.98□□□□□ -1.93
PTPN4-209ENST00000469511 EIF5AL1Q6IS14 154 aaKnown RBP2.98□□□□□ -1.93
PTPN4-209ENST00000469511 LYZL1Q6UWQ5 148 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms